mRNA_H-akashiwo_Contig1248.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1248.3.1
Unique NamemRNA_H-akashiwo_Contig1248.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 344 bits (882), Expect = 2.550e-107
Identity = 166/305 (54.43%), Postives = 228/305 (74.75%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVG-NSNISAEVDEESAKTFRSMVGTLMWLQ-WTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLGGKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSL 909
            +SVYVDD+V+ASS    EL RIK+ +++ Y VSD+GE+ SILG+K+ R+RT RTIT+SQ +F+ EAC K  +RS+ PV+ P +  IDV  N++ S  +    AK FRS+VGT+ WL  WT PE+++++H+L++ F +P+ N L A+ H L+Y WWT+D  +TLGG ++L A+ D+DFCSER KG+SR+G+ +FLG  P++W+SR QHCV  NT+EAEYVSLR+  TDVMWLKR+L  +GY Q  V IYEDNK C  WAN E+V K+ARHIHVS+H+ KEMV  +E+ VK + T  Q+AD+FTK L
Sbjct:  678 ISVYVDDIVLASSDK-SELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 981          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 253 bits (647), Expect = 4.330e-79
Identity = 135/311 (43.41%), Postives = 193/311 (62.06%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNS-NISAEVDEESAKTFRSMVGTLMWL-QWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLGGKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQ-DPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKF 924
            ++VYVDDLVI+ S   + +   K+ LA KY ++D GEL  ILG+K+ R++  +   +SQ++F+ +A  K GL        P D  +D+  +    AE+ +  A  +RSMVGTL W+  WTRPEL+FTVH L R   NP   H  A + A +Y   T+  SL LGG + L+AF+DSDFC++R  GKS  GY++FLG+ P++W+S+ Q  V  +T EAEY++LR    D+MWL+ +L +MG PQ +P  + EDN  C  WAN   V+K  RH HVS+H  KE V+   + +  + T DQVAD+ TK+L    F
Sbjct:   33 VAVYVDDLVISGSSQAV-VSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSD--ANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 340          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A0C3AUA9_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AUA9_9AGAM)

HSP 1 Score: 182 bits (463), Expect = 3.740e-52
Identity = 101/295 (34.24%), Postives = 171/295 (57.97%), Query Frame = 1
Query:   64 IKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSNISA---EVDEESAKTFRSMVGTLMWLQW-TRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLGGKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMG-YPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEF 933
            +++ +  +Y +S  GEL+ +LG++I R+R+ +TI++SQS ++     + GL +  P + P    + +      A   EV E +   +R +VG+LM+L+  TRP++S+ V  L++  NNP + H  AA+  L++   ++D  LTLGG   L A++D+D+  +    KS  GYV  +G G V W+S++Q  VAL++ EAEY++L     + +W+K  LAD+  +   PV ++ DN+G    A +   H   +HI +  HF+++ VA   + V  +ST D +AD  TK L+  K L F
Sbjct:    2 LEKAIDARYGISSAGELSWLLGMRITRDRSAKTISLSQSAYIDSLVTRFGLDNATPAATPFVQGVALTRDQCPANDDEVREMANVPYRELVGSLMYLRVATRPDISYHVSVLSKFLNNPGRAHWEAAKRVLRFLKGSRDWKLTLGGFSDLVAYSDADWAGDHDDRKSTGGYVFLVGRGAVSWSSKRQPTVALSSLEAEYMALTQAAKEAIWIKSYLADIDVHVHGPVTVFGDNQGSLALAKNPVFHARTKHIDIQHHFIRDCVASGTIFVDYISTHDMLADGLTKPLSRDKHLRF 296          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: J6ERE3_TRIAS (Gag-Pol n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6ERE3_TRIAS)

HSP 1 Score: 192 bits (489), Expect = 1.690e-51
Identity = 114/311 (36.66%), Postives = 182/311 (58.52%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDV-GNSNISAEVDEESAKTFRSMVGTLMWLQW-TRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLGG-KIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQ-DPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKK 921
            L  YVDDL++A+S T  E   + + L+  +++SDLGE+  ILG+K+ R+R++RTI +SQ+ ++ +   +    +     Y    + ++   SN++ +     AK ++ +VG L+WL   TRP+++F V  L R    PT+ HL  A   L Y  +T+DL LTLGG +  LQ F DSD+    Q  +S  GY VFL  G V W SR+Q   A +T EAEYV+  + T +V+WL+ +L+++G P   P ++  DN+      N+ +V   ++HI +  H V+E V D+ + ++ + T +Q AD+ TKSL G K
Sbjct: 1086 LLAYVDDLILATS-TKHEADIVVQALSSFWKISDLGEVTHILGMKVGRDRSERTIHLSQATYIDQLVTRFKAENIKSGKYAPLPQGELPAPSNVAEDAVPARAKIYKELVGALLWLSGRTRPDIAFAVSYLGRSACAPTEQHLALARRVLAYLRYTRDLVLTLGGTEDPLQLFVDSDWAGCVQTRRSTTGYCVFLFGGLVSWCSRRQGSTAASTMEAEYVAPAEATREVVWLRALLSELGLPLLGPTVVNIDNEAALRLGNNPTVFARSKHIDIKHHIVREKVEDKIIELRYIPTDEQRADILTKSLPGIK 1395          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A1U8MG77_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MG77_GOSHI)

HSP 1 Score: 182 bits (462), Expect = 5.910e-51
Identity = 110/320 (34.38%), Postives = 179/320 (55.94%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSNISAEVDEE---SAKTFRSMVGTLMWLQWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLG-GKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMG-YPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEFRSCL 945
            L VYVDD+V+  S    E+  +   L  K+ + D+GELN  LG  ID   TK+ I +SQ  ++ +   K+GL    P   P      V N  ++A VD         +RS+VG L ++  TRP+LSF+V+ L++  N P + H  A +  L+Y   T D  L L   ++ L  ++D+D+ S  +  +S +GYVVFLG  PV W S++Q  V+ +++EAEY SL +C ++++WL+++LA++G +P    +++ DN      A + + H   +H+ +  HFV+E +    + V  + +  Q+AD+ TK +T K F  FR  L
Sbjct:   70 LMVYVDDIVLTGSSD-QEMADVILHLHSKFALKDMGELNFFLG--IDVQHTKQGILLSQKKYIVDLLKKTGLVEATPTPTPM-----VSNPKLAASVDSPPLVDVHLYRSVVGMLQYVCITRPDLSFSVNKLSQFMNAPREAHWRALKRVLRYLAGTIDHGLFLTPSQLKLVCYSDADWASSIEDRRSTSGYVVFLGSNPVAWCSKKQPVVSRSSAEAEYRSLANCVSELLWLQQLLAEIGIFPSKVPVVWCDNSSAVSVAENPTHHARMKHVEIDHHFVREKILAGHLQVNFVPSDQQIADVLTKPITPKMFSTFRYAL 381          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A2N9FWE2_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FWE2_FAGSY)

HSP 1 Score: 191 bits (484), Expect = 7.170e-51
Identity = 110/314 (35.03%), Postives = 183/314 (58.28%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSNISAEVDEESAKTFRSMVGTLMWLQWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLG-GKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMG-YPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEFR 936
            L +YVDD+V  +S T   L  + ++L   + + DLG L+  LGL+I R+ ++  IT  QS +  +   K  +    P S PS   + +   +     D  +   +RSMVGTL +L +TRP++SF VH + +  + PT  HL AA+  L+Y   T +  +    G +HL  +TD+D+  +    +S +G++V+LG   + W++++Q  V+ +++E+EY +L   +T++ W++ +L D+G Y  DP I++ DN      A++   H   +HI V FHFV+E V  ++++VK  ST DQ+AD+FTKSL   +FLE R
Sbjct:  804 LLLYVDDIVF-TSNTPSFLDHLIQQLNSTFDLKDLGSLHYFLGLQITRSSSRLYIT--QSKYAQDLLKKHNMLDCKPASSPSCPNVRLAVHDGDLLTDPHA---YRSMVGTLHYLTFTRPDISFVVHQVCQYMSTPTTTHLTAAKRVLRYIRGTFNHGIEFTPGPLHLSVYTDADWAGDPDDRRSTSGFLVYLGNNAITWSAKKQPTVSRSSTESEYRALAIASTEICWVRSLLKDLGIYLTDPPILWCDNVSALAIASNPVFHARTKHIEVDFHFVQERVLRKDLVVKFFSTVDQLADIFTKSLPTHRFLELR 1111          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D)

HSP 1 Score: 183 bits (465), Expect = 1.500e-50
Identity = 102/320 (31.87%), Postives = 182/320 (56.88%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSN--ISAEVDEESAKT-FRSMVGTLMWLQW-TRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLGGK-IHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEFRSCL 945
            L +YVDD++IA    + E+  +K ++A  + + D+GE + ILG++I+R+R+K+ I +SQ+ ++ +   +  +     +S P    + +   +  +S E   E  K  + S VG+LM+    TRP+++F V  ++R  +NP K H  A +  L+Y   TK + +  G + + ++ FTDSD+  +    +S +GYV  L  G V W SR Q CV  +T+EAEYV+  +   + +WL R++ D+G  ++  ++Y D++     A +   H   +H+ V +HF++EM+ D+++ +  + TT+  ADL TK L  + F  FR  L
Sbjct:  164 LILYVDDMLIAGKH-LEEISALKSKMAKSFDMKDMGEASHILGMRIERDRSKKLIWLSQTEYIDKVLQRFNMEKGKALSVPLPPYVKLSKQDCPVSEEEQAEMDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICYGSQELSVKGFTDSDYAGDLDNRRSTSGYVFTLAGGAVSWRSRLQDCVTQSTTEAEYVAASEACKESIWLNRLVTDLGIKEEMPVLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIREMLEDKQLQLVKVHTTENPADLLTKGLPSESFAHFRKQL 482          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A2N9GZW7_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GZW7_FAGSY)

HSP 1 Score: 186 bits (473), Expect = 2.520e-50
Identity = 108/316 (34.18%), Postives = 185/316 (58.54%), Query Frame = 1
Query:    1 LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPS--DSRIDVGNSNISAEVDEESAKTFRSMVGTLMWLQWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLG-GKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMG-YPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEFR 936
            L +YVDD+V+ +S T   L  +  +L   + + DLG L+  LGL+I R+ +  ++ I+QS +  +   K  +    P S PS  + R+ V + ++  +        +RSMVG L +L +TRP++SF VH + +  + PT  HL AA+  L+Y   T +  +    G +HL  +TD+D+  +    +S +G++V+LG   + W++++Q  V+ +++E+EY +L   + +  W++ +L D+G Y  DP I++ DN      A++   H   +HI V FHFV+E V  ++++VK +ST DQ+AD+FTKSL   +FLE R
Sbjct:  366 LLLYVDDIVL-TSNTPSFLDHLIHQLNSIFDLKDLGSLHYFLGLQITRSSS--SLCITQSKYAQDLLTKHNMLDCKPASSPSCPNVRLSVHDGDLLPD-----PHAYRSMVGALHYLTFTRPDISFAVHQVCQYMSAPTTTHLAAAKRVLRYIRGTFNHGIEFTPGPLHLSVYTDADWAGDPDDRRSTSGFLVYLGNNAITWSAKKQPTVSRSSTESEYRALAIASAETCWVRSLLQDLGIYLTDPPILWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLRKDLVVKFVSTVDQLADIFTKSLPTHRFLELR 673          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: A0A2H9ZYF2_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZYF2_9ASPA)

HSP 1 Score: 189 bits (479), Expect = 3.160e-50
Identity = 113/315 (35.87%), Postives = 176/315 (55.87%), Query Frame = 1
Query:   10 YVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSNISAEVDEESAKTFRSMVGTLMWLQWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTLGG--KIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQDPVI-IYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEFRSCL 945
            YVDD++  SS +   L   K ++  ++ ++DLG L+  LGL+I   +T + I +SQ  +  +   K G+R+   V  P +S   +    +       ++K FRS+VG LM+L  TRP+L F V  ++R  + PTK HL AA+  L+Y   T +  +       I L  F DSD+       KS +G++  LG G + W S++Q  VAL++SEAEYV+        +W++R+L D+  PQ+    I+ DN G    A +   H  A+HI + +HF++EMV+   + +K  ST DQVAD+ TK+L  +KF+ FR CL
Sbjct:  738 YVDDIIYTSSSSTF-LNGFKEKMKHEFEMTDLGLLHYFLGLEI--KQTSKGIFLSQEKYTSDLLEKFGMRNCNKVETPMNSSEKL---QLEDGTSLANSKYFRSLVGGLMYLTHTRPDLLFAVSMVSRFMHKPTKQHLGAAKRILRYIKGTSNYGIWYSQTTNIKLFGFCDSDWAGSLDDRKSTSGFLFTLGSGAISWTSKKQASVALSSSEAEYVAAASACCQAIWIRRILTDLHQPQEEATNIFCDNMGAILMAKNPCQHGRAKHIDIKYHFIREMVSKGAIEMKSCSTHDQVADILTKALPSQKFINFRKCL 1046          
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Match: UPI001929D678 (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929D678)

HSP 1 Score: 180 bits (457), Expect = 7.180e-50
Identity = 105/315 (33.33%), Postives = 173/315 (54.92%), Query Frame = 1
Query:    7 VYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNRTKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSNISAEVDEESAKTFRSMVGTLMWLQWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKYAWWTKDLSLTL--GGKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWASRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQDPVIIYEDNKGCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFTKSLTGKKFLEFRSCL 945
            VYVDDL++    T  E+Q  K  L+I++++ +LGEL   LGL++++  TK  + + Q  +  +     G+    P+S P +  I +         D E+ + +R +VG+L++L  TRP+L++ V   +R   NP K HL A    L+Y   T D  +    G +  +  + D+D+  +    +S  GY+  LG G V W S++Q  V+L+T+EAEY +      +  WL ++L D+  P + V ++ DN+     A +   H   +HI V +HF++E V   E+ +KL  T +QVAD+FTKSL+ KKF + R+ L
Sbjct:   86 VYVDDLILTGDLT-EEIQCTKENLSIRFQMKELGELKHFLGLEVEK--TKEGMFLCQQKYAKDLLETYGMLECKPLSTPMEPNIKL---RAGEGKDLENPRMYRQLVGSLIYLTLTRPDLAYAVGVASRYMQNPKKPHLEAVRRILRYLKGTTDYGILYRKGERCQVTGYCDADYAGDCDTRRSTTGYIFSLGTGAVSWCSKRQPTVSLSTTEAEYRAAAMAAQESTWLMQLLRDLHQPIEQVTLHCDNRSAVCLAENPMFHARTKHIEVHYHFLREKVLQGEIHMKLTPTEEQVADIFTKSLSTKKFEDLRAQL 394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1248.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK2.550e-10754.43Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD78_HETAK4.330e-7943.41Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A0C3AUA9_9AGAM3.740e-5234.24Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
J6ERE3_TRIAS1.690e-5136.66Gag-Pol n=1 Tax=Trichosporon asahii var. asahii (s... [more]
A0A1U8MG77_GOSHI5.910e-5134.38uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2N9FWE2_FAGSY7.170e-5135.03Integrase catalytic domain-containing protein n=1 ... [more]
UPI001028384D1.500e-5031.88Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A2N9GZW7_FAGSY2.520e-5034.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2H9ZYF2_9ASPA3.160e-5035.87Retrovirus-related Pol polyprotein from transposon... [more]
UPI001929D6787.180e-5033.33uncharacterized mitochondrial protein AtMg00810-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1248contigH-akashiwo_Contig1248:287942..288886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5297.GMQ_02354T0
PFAMsDUF5314,RVT_2,gag_pre-integrs,rve,zf-CCHC
Model size945
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.88e-50
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,2YC45@29000|Pucciniomycotina
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size945
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387131.3254669-CDS-H-akashiwo_Contig1248:287941..2888861681387131.3254669-CDS-H-akashiwo_Contig1248:287941..288886Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1248 287942..288886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1248.3.1prot_H-akashiwo_Contig1248.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1248 287942..288886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1248.3.1

>prot_H-akashiwo_Contig1248.3.1 ID=prot_H-akashiwo_Contig1248.3.1|Name=mRNA_H-akashiwo_Contig1248.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=315bp
LSVYVDDLVIASSGTIIELQRIKRELAIKYRVSDLGELNSILGLKIDRNR
TKRTITISQSNFVHEACCKSGLRSFLPVSYPSDSRIDVGNSNISAEVDEE
SAKTFRSMVGTLMWLQWTRPELSFTVHSLARGFNNPTKNHLLAAEHALKY
AWWTKDLSLTLGGKIHLQAFTDSDFCSERQKGKSRAGYVVFLGEGPVLWA
SRQQHCVALNTSEAEYVSLRDCTTDVMWLKRMLADMGYPQDPVIIYEDNK
GCFHWANSESVHKAARHIHVSFHFVKEMVADQEVIVKLLSTTDQVADLFT
KSLTGKKFLEFRSCL
back to top

mRNA from alignment at H-akashiwo_Contig1248:287942..288886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1248.3.1 ID=mRNA_H-akashiwo_Contig1248.3.1|Name=mRNA_H-akashiwo_Contig1248.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=945bp|location=Sequence derived from alignment at H-akashiwo_Contig1248:287942..288886- (Heterosigma akashiwo CCMP452)
CTATCTGTCTACGTTGATGATCTAGTGATTGCCAGTTCTGGCACTATTAT TGAACTTCAGCGTATCAAGCGTGAACTTGCAATCAAGTATAGAGTGTCTG ACTTGGGAGAACTAAATTCAATTCTTGGATTGAAGATTGACAGAAACAGA ACGAAAAGAACTATCACCATAAGTCAATCTAATTTTGTTCATGAAGCTTG TTGCAAGTCTGGGCTTCGATCTTTCCTACCTGTCTCTTATCCATCTGATT CTAGGATAGATGTTGGCAACTCCAATATATCTGCGGAAGTTGATGAAGAA TCAGCCAAGACTTTCAGGTCCATGGTTGGAACCCTCATGTGGCTACAATG GACGAGGCCCGAGCTCTCTTTTACTGTGCACTCTCTGGCTAGAGGTTTCA ATAACCCTACAAAAAATCACCTACTTGCTGCTGAACATGCTCTAAAATAT GCTTGGTGGACTAAGGATTTATCACTTACTCTGGGAGGCAAGATTCATTT ACAAGCCTTTACTGATTCTGATTTCTGTTCAGAGAGACAGAAAGGAAAGA GCAGGGCTGGATATGTTGTCTTTCTTGGGGAAGGACCTGTTCTTTGGGCT TCTAGACAACAGCACTGCGTTGCTCTCAACACATCTGAGGCTGAGTATGT TTCTCTTAGAGACTGTACAACTGATGTGATGTGGTTGAAAAGAATGCTTG CTGACATGGGCTACCCTCAAGATCCTGTTATTATTTATGAAGATAACAAA GGCTGCTTTCATTGGGCAAACTCTGAATCAGTTCATAAGGCTGCTAGACA TATTCATGTCTCATTTCATTTTGTAAAGGAAATGGTTGCAGATCAAGAAG TCATTGTGAAGCTATTATCCACCACTGATCAAGTAGCTGATCTGTTTACA AAATCCTTGACTGGAAAGAAATTTCTTGAGTTCAGAAGTTGTCTC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1248:287942..288886-

>mRNA_H-akashiwo_Contig1248.3.1 ID=mRNA_H-akashiwo_Contig1248.3.1|Name=mRNA_H-akashiwo_Contig1248.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=945bp|location=Sequence derived from alignment at H-akashiwo_Contig1248:287942..288886- (Heterosigma akashiwo CCMP452)
CTATCTGTCTACGTTGATGATCTAGTGATTGCCAGTTCTGGCACTATTAT
TGAACTTCAGCGTATCAAGCGTGAACTTGCAATCAAGTATAGAGTGTCTG
ACTTGGGAGAACTAAATTCAATTCTTGGATTGAAGATTGACAGAAACAGA
ACGAAAAGAACTATCACCATAAGTCAATCTAATTTTGTTCATGAAGCTTG
TTGCAAGTCTGGGCTTCGATCTTTCCTACCTGTCTCTTATCCATCTGATT
CTAGGATAGATGTTGGCAACTCCAATATATCTGCGGAAGTTGATGAAGAA
TCAGCCAAGACTTTCAGGTCCATGGTTGGAACCCTCATGTGGCTACAATG
GACGAGGCCCGAGCTCTCTTTTACTGTGCACTCTCTGGCTAGAGGTTTCA
ATAACCCTACAAAAAATCACCTACTTGCTGCTGAACATGCTCTAAAATAT
GCTTGGTGGACTAAGGATTTATCACTTACTCTGGGAGGCAAGATTCATTT
ACAAGCCTTTACTGATTCTGATTTCTGTTCAGAGAGACAGAAAGGAAAGA
GCAGGGCTGGATATGTTGTCTTTCTTGGGGAAGGACCTGTTCTTTGGGCT
TCTAGACAACAGCACTGCGTTGCTCTCAACACATCTGAGGCTGAGTATGT
TTCTCTTAGAGACTGTACAACTGATGTGATGTGGTTGAAAAGAATGCTTG
CTGACATGGGCTACCCTCAAGATCCTGTTATTATTTATGAAGATAACAAA
GGCTGCTTTCATTGGGCAAACTCTGAATCAGTTCATAAGGCTGCTAGACA
TATTCATGTCTCATTTCATTTTGTAAAGGAAATGGTTGCAGATCAAGAAG
TCATTGTGAAGCTATTATCCACCACTGATCAAGTAGCTGATCTGTTTACA
AAATCCTTGACTGGAAAGAAATTTCTTGAGTTCAGAAGTTGTCTC
back to top