mRNA_H-akashiwo_Contig1246.2.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A835ZCE2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE2_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.060e-38 Identity = 108/220 (49.09%), Postives = 141/220 (64.09%), Query Frame = 1
Query: 151 RRAAFACGT----FQNSSVSLPSN------LQRQHLCPLQAYH---FSTDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTADIKVGDAVAVAVEDLDAYNKFLEADSAGLIKLA----AASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGA-RLSPAARHFAESKGLDATGLAGSVKGGKI 756
RR+++AC + +V++P + L++Q L A H S++ PS+T MPALSPTME+GTIT W +PG A GDVLC+VETDKATV++E+QE+GVLAKIL+ EG ++KVG VAV VED AY+ F +AD+AG + A S D+ XXXXXXXXXXXXX VP SPAARH A+SKG+D LAGS +GG++
Sbjct: 26 RRSSYACAIQGAEIHSGAVAIPRSRAGHRYLRQQGLQDGNAVHRRWLSSEAPSFTVVNMPALSPTMETGTITKWHAQPGTALAPGDVLCDVETDKATVAFEVQEDGVLAKILVQEGGGEVKVGSPVAVTVEDEAAYDAFTKADAAGSLPYFSGEDAPSATDSQPQAPAAXXXXXXXXXXXXXANRTVPEEFAYSPAARHLAQSKGIDIVSLAGSGRGGRV 245
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A7S2ALJ9_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALJ9_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.020e-35 Identity = 85/176 (48.30%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 250 FSTDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTADIKVGDAVAVAVEDLDAYNKFLEADSAGLIKLAA---ASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGARLSPAARHFAESKGLDATGLAGSVKGGKIITKG 768
FS++V Y T MPALSPTMESGTI W+ +PG+E AAGDVLC+VETDKAT+++E+Q++ VLAK L+ G I +G AVA+ V+D+ AY FL AD+AG I + A + A L+PAARH +ESKGLD GLAG+ KGG+I TKG
Sbjct: 71 FSSEV-EYVTVVMPALSPTMESGTIAEWSKQPGEEIAAGDVLCQVETDKATMAFEMQDDAVLAKQLVPAGDESINIGTAVAITVDDMAAYEAFLAADAAGEISIDANDGPAAGGAVDEVETTTGTVSSEAAMIASTRTVADEFLLTPAARHMSESKGLDVRGLAGTGKGGRI-TKG 244
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A6H5L3X9_9PHAE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X9_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.980e-34 Identity = 98/186 (52.69%), Postives = 124/186 (66.67%), Query Frame = 1
Query: 226 LCPLQAYHFSTDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTADIKVGDAVAVAVEDLDAYNKFLEADSAGLIKLAAAS--------PADASXXXXXXXXXXXXXXXXXXXXXXXVPGARL-SPAARHFAESKGLDATGLAGSVKGGKI 756
L P Q T +T MPALSPTMESGT+T W PG E +AGDV+C+VETDKATV++++Q++GVLA+I+ + G+ ++ VG VAV VED DAY F++AD+AG + AA XXXXXXXXXXXXXXXX VP A L SPAARH A+SKG+DA+ L G+ KGG+I
Sbjct: 76 LLPRQTARALTSGVDFTVVNMPALSPTMESGTVTEWHKSPGDELSAGDVICDVETDKATVAFDVQDDGVLARIISEAGSGEVSVGSPVAVIVEDGDAYAAFVKADAAGEVDFAALGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNLPERSVPEAFLFSPAARHMAQSKGIDASSLEGTGKGGRI 261
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A812V1C5_SYMMI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V1C5_SYMMI) HSP 1 Score: 134 bits (338), Expect = 7.940e-33 Identity = 82/186 (44.09%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 247 HFSTDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTADIKVGDAVAVAVEDLDAYNKFLE--ADSAGL-IKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGARLSPAARHFAESKGLDATGLAGSVKGGKIITKGRDP*PLKAG 795
HFST++ S T MP+LSPTM GTI+SW PG+ AGD+LC+VETDKA+V +E+Q++GVLAKIL+D G A+++ G +A+ VED Y FL+ AD+ + + AAASP A +LSPAARH +S+ LD + + GS KGG++ITKG +KAG
Sbjct: 40 HFSTEI-SITKLPMPSLSPTMTHGTISSWNKAPGEALKAGDILCDVETDKASVGFEVQDDGVLAKILVDAGGAEVQCGQPIALMVEDDADYQTFLKLPADAYPVAVPAAAASPPAAPSHTPSSAAPSFAGH------------VQLSPAARHMVQSRSLDVSAVHGSSKGGRVITKGDVIQAVKAG 212
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A7S2R7Y6_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7Y6_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.810e-32 Identity = 85/198 (42.93%), Postives = 112/198 (56.57%), Query Frame = 1
Query: 178 FQNSSVSLPSNLQRQ-HLCPLQAYHFSTDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTADIKVGDAVAVAVEDLDAYNKFLEADSAGLIKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGARLSPAARHFAESKGLDATGLAGSVKGGKIITKG 768
+Q ++L + L+R L P F +VP ++ MPALSPTME G+I+SW +PG AG+ L EVETDKA V +E Q++ VLAK+L G + VGD +A+ V D A+ F AD+AGL+ L +A A+ XXXX L PAA H A S+G+DAT LAGS KGG+I TKG
Sbjct: 6 WQMLRLALRTALRRPLRLAPGGGRWFGAEVPDFSVVHMPALSPTMERGSISSWAKQPGDSIEAGETLAEVETDKAVVGFEYQDDAVLAKVLDPAGGTEFTVGDPIAITVVDHAAFEAFQTADAAGLVSLPSAGNTPAAVSATXXXXSTASAPTGPVEGRQVTDEFLLMPAAAHLARSRGIDATALAGSGKGGRI-TKG 202
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A7S3P4Y1_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4Y1_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.880e-30 Identity = 81/174 (46.55%), Postives = 102/174 (58.62%), Query Frame = 1
Query: 259 DVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTA-DIKVGDAVAVAVE---DLDAYNKFLEADSAGLIKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGARLSPAARHFAESKGLDATGLAGSVKGGKIITKG 768
D P +T F MPALSPTM+SGTI SW L G FAAGDVLC +ETDKA V +E Q++G+LAKIL TA D+ VG + V E D+ A+ ++ D+ +AAA+PA A+ + L P+ARH AESKGLDAT L GS KGG++ TKG
Sbjct: 73 DYPPHTIFPMPALSPTMDSGTIASWALAEGNSFAAGDVLCSIETDKAAVDFEAQDDGILAKILKQGPTAVDLPVGTPICVVCEEEADVPAFADYVADDA-----VAAAAPATAASEQPVSDAATPAASEAPSTATGASGTSLLLPSARHLAESKGLDATVLKGSGKGGRV-TKG 240
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A7S2LCD3_9STRA (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCD3_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.720e-29 Identity = 79/173 (45.66%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 253 STDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTADIKVGDAVAVAVEDLDAYNKFLEADSAGLIKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGAR-LSPAARHFAESKGLDATGLAGSVKGGKIITKG 768
S+ +PS+ +PALSPTMESG I W ++ GQ F GDVLCEVETDKATV +E Q++GVLAKIL G+ DIKVG V + VED D F + + L S AD + LSPAARH ++SKGLDAT L G+ KGG++ TKG
Sbjct: 26 SSSLPSHEVVGLPALSPTMESGNIADWKIEEGQAFGPGDVLCEVETDKATVDFEAQDDGVLAKILKPSGSQDIKVGAPVCIVVEDEDDVASFADYNV-----LDDVSSADDETPAVVASSDTVTEAVVTPSPSRDIEDQYILSPAARHLSQSKGLDATVLTGTGKGGRV-TKG 192
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A7S4SV80_9STRA (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SV80_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.340e-28 Identity = 83/214 (38.79%), Postives = 117/214 (54.67%), Query Frame = 1
Query: 154 RAAFACGTFQNSSVSLPSNLQRQHLCPLQAYHFSTDV----PSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTA-DIKVGDAVAVAVEDLD---AYNKFLEADSAGLIKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGAR-LSPAARHFAESKGLDATGLAGSVKGGKIITKG 768
R +F + ++P++ R + + Y + V P +T F MPALSPTME+GTI+ W G+EF+AGD+LCE+ETDKATV +E Q++GVLAKIL + A D+ +G + V VE+ D A+ F+ D AG AA+P A V L P+ARH ++S+G+DAT L GS KGG++ TKG
Sbjct: 74 RRSFQSRAIRREICAVPTS-SRMEIASRRPYSSTASVLSSYPPHTLFPMPALSPTMETGTISKWNKSEGEEFSAGDILCEIETDKATVDFEAQDDGVLAKILREGSNAVDLPIGVPICVVVEEADELAAFKDFVLDDGAG----GAAAPTAAQEEAPAAASAPTPTAQAESVVNRDVADEFVLMPSARHLSQSRGVDATVLVGSGKGGRV-TKG 281
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A1E7FSH3_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSH3_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.560e-27 Identity = 84/200 (42.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query: 244 YHFST-----DVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTA-DIKVGDAVAVAVEDLDAYNKF-----LEADSAGLIKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGARLSPAARHFAESKGLDATGLAGSVKGGKIITKG------RDP*PLKA 792
+H ST D P +T PALSPTME+GTI +W L G EF+AG VLC +ETDKAT+ YE Q++G +AKIL D A D+ +G +A+ VE+L+ F LE + + +AS ADA L P+AR AESKGLDATGL GS KGG++ TKG RD P+ A
Sbjct: 50 FHSSTVVSKDDYPVHTVLPFPALSPTMETGTIANWELSEGDEFSAGSVLCSIETDKATMDYEAQDDGFIAKILRDGPDASDLPIGTPIAIVVEELEDVAAFADYVVLEDEGNAGVGDVSASSADAPIAPTSGSTTAAPVAGGDSGTSF------LLPSARFLAESKGLDATGLKGSGKGGRV-TKGDVLAAIRDGTPMPA 242
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Match: A0A7S3QC46_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QC46_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.640e-27 Identity = 86/233 (36.91%), Postives = 115/233 (49.36%), Query Frame = 1
Query: 103 TLQRQKRTLLLVPPKTRRAAFACGTFQNSSVSLPSNLQRQHLCPLQAYHFSTDVPSYTTFEMPALSPTMESGTITSWTLKPGQEFAAGDVLCEVETDKATVSYELQEEGVLAKILIDEGTA-DIKVGDAVAVAVEDLDAYNKFLEADSAGLIKLAAASPADASXXXXXXXXXXXXXXXXXXXXXXXVPGARLSPAARHFAESKGLDATGLAGSVKGGKIITKGRDP*PLKAGV 798
T Q QKR L ++ + ++ G F + R L A + P +T + MPALSPTME+GTI W + G FAAGDV+CE+ETDKATV +E Q++G++AKIL+D A D+ VG + V VED D F + + A A AS + L P AR ++S+GLDAT L GS K G++ TKG LK GV
Sbjct: 2 TFQSQKRLLTILARQRANISYV-GNFGAAG--------RSALANSLALRCMSSYPEHTLYPMPALSPTMETGTIAKWNMGTGDSFAAGDVICEIETDKATVDFEAQDDGIIAKILLDGSNASDVDVGVPICVVVEDEDDVAAFAD------FTIEDAGGASASDSAKEEVTEEVAPAGSVAPTELLSEASILMPGARFLSQSQGLDATVLKGSGKDGRV-TKGDVIQALKEGV 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1246.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1246.2.1 >prot_H-akashiwo_Contig1246.2.1 ID=prot_H-akashiwo_Contig1246.2.1|Name=mRNA_H-akashiwo_Contig1246.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=249bp MLRVLASQAKGTRSMPQRWAKNNTLQRQKRTLLLVPPKTRRAAFACGTFQback to top mRNA from alignment at H-akashiwo_Contig1246:158567..159686+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1246.2.1 ID=mRNA_H-akashiwo_Contig1246.2.1|Name=mRNA_H-akashiwo_Contig1246.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1120bp|location=Sequence derived from alignment at H-akashiwo_Contig1246:158567..159686+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1246:158567..159686+ >mRNA_H-akashiwo_Contig1246.2.1 ID=mRNA_H-akashiwo_Contig1246.2.1|Name=mRNA_H-akashiwo_Contig1246.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=747bp|location=Sequence derived from alignment at H-akashiwo_Contig1246:158567..159686+ (Heterosigma akashiwo CCMP452)back to top |