mRNA_H-akashiwo_Contig1244.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1244.10.1
Unique NamemRNA_H-akashiwo_Contig1244.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: Q07S70_RHOP5 (Globin n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07S70_RHOP5)

HSP 1 Score: 59.7 bits (143), Expect = 6.480e-9
Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTAVQQ 345
            F+   F+  P  R LF G + +   KL+  +G ++S          +   LA  H   GV P+ YAP    L  T++K +GD WT +   +WTA   ++   M+  A  Q
Sbjct:   27 FYGKLFDIAPEVRALFKGDIAEQGKKLMGTLGVVVSGLTDLDAILPAASRLARHHVSYGVKPSHYAPVGAALLWTLEKGLGDEWTPDLAEAWTAAYGTLSGYMIEQAYGQ 136          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: UPI001EDF804C (globin domain-containing protein n=1 Tax=Yoonia sp. I 8.24 TaxID=1537229 RepID=UPI001EDF804C)

HSP 1 Score: 54.3 bits (129), Expect = 7.440e-7
Identity = 32/110 (29.09%), Postives = 52/110 (47.27%), Query Frame = 1
Query:    7 SDDFFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTA 336
            +D F+   FE  P  R +F G + +   KL+ M+G++++      +     E LA  H   GV    Y      L  T+   +GD +T E E +WTA  +++  +MV  A
Sbjct:   24 ADIFYTRLFEVAPQVRPMFKGDIAEQGSKLMAMMGTVVNGLRDLDKIIPVAEALAVKHIDYGVKAEHYDTVGASLLYTLNAGLGDDFTAEVEEAWTAAYTTLAGVMVNAA 133          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: A0A848RX62_9MICO (Hemin receptor n=1 Tax=Planctomonas sp. JC2975 TaxID=2729626 RepID=A0A848RX62_9MICO)

HSP 1 Score: 54.3 bits (129), Expect = 7.570e-7
Identity = 30/110 (27.27%), Postives = 54/110 (49.09%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTAVQQ 345
            F+   F+  P+ R LF   + + + KL+ M+G  ++  ++    ++ +  L A H   GV P  Y      L  T+ K +GD +T E E +WTA  +++   M+  A  +
Sbjct:   27 FYDELFQRDPSLRPLFTEDMTEQRKKLMTMLGMAVNGLKNWDSTQRVVANLGARHVGYGVKPEYYPTVGAALLATLSKGLGDDFTPEVEEAWTAAYTALSGTMIEAAADK 136          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: UPI0012E27B3D (globin domain-containing protein n=1 Tax=Oceanobacillus sp. HTM 045 TaxID=2676312 RepID=UPI0012E27B3D)

HSP 1 Score: 53.1 bits (126), Expect = 2.050e-6
Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLF-NGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMV 327
            F+   FE  P  R LF N ++   Q KL + + +++ S   A      L  + A H   GV  + Y  F+  +  T+++R+G+ WT E  ++WTA I+  +  M+
Sbjct:   27 FYERLFEVDPDTRRLFENTEMPVQQTKLARALETIVRSAGDAEGMASRLRAMGARHTGYGVDGSHYYSFASAMLWTLEQRLGEAWTPEMRDAWTAAIAGAVGAMM 131          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: A0A1C4XVE3_MICVI (Flavohemoprotein n=1 Tax=Micromonospora viridifaciens TaxID=1881 RepID=A0A1C4XVE3_MICVI)

HSP 1 Score: 54.7 bits (130), Expect = 2.760e-6
Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTA 336
            F+++ F A P  R +F   +   + +LV  +G ++S  +        L++L A H K  V    Y      L  T++  +G+ WTEE E  WTA    +  +M+  A
Sbjct:   24 FYSTLFLAYPEVRQMFPANMAGQRDRLVSALGHIVSHVDQVDGLVGFLQDLGADHRKFAVRAEHYPAVGEALLATLRHFLGEAWTEELEQDWTAAYGLVSQVMIDAA 130          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: A0A3N2P555_9ACTN (Flavohemoprotein n=2 Tax=Micromonospora sp. HM5-17 TaxID=2487710 RepID=A0A3N2P555_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 2.770e-6
Identity = 31/107 (28.97%), Postives = 51/107 (47.66%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTA 336
            F+++ F A P  R +F   +   + +L+  +G ++S  + A Q    L+ L A H K  V P  Y      L  T++  +G+ WTEE    W+A    I  +M+  A
Sbjct:   24 FYSTLFLAYPETRQMFPTNMAGQRDRLLTALGHIVSHVDQAEQLVGFLQSLGADHRKFAVRPEHYPAVGEALLATLRHFLGEQWTEELAQDWSAAYGLIAKVMMDGA 130          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: A0A848E9L8_9PROT (Hemin receptor n=2 Tax=Roseomonas TaxID=125216 RepID=A0A848E9L8_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 5.280e-6
Identity = 33/107 (30.84%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    7 SDDFFASFFEAVPTARMLFNGK-LRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIM 324
            +D F+   F   PT+R LF    L + + KL+ M+ S+++     A    + E LA  H   GV   QY      L  T++K +G+ WT++   +WTA  S +  +M
Sbjct:   24 ADLFYDRLFAIDPTSRPLFKSDTLPEQKRKLMLMLNSVVAGLSRPADIVPAAEALARRHVNYGVTAEQYDSVGAALLWTLEKGLGEAWTKDASEAWTAAYSLLSGVM 130          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: A0A1M6M959_9BRAD (Nitric oxide dioxygenase n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6M959_9BRAD)

HSP 1 Score: 52.0 bits (123), Expect = 5.870e-6
Identity = 28/107 (26.17%), Postives = 49/107 (45.79%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTA 336
            F+   FE  P  + +F G +   + KL+ M+G+++    +      +   LA  H   G     Y      L  T++K +GD WT E  ++WTA  +++   M+  A
Sbjct:   27 FYDRLFEIAPAVKPMFTGDMAVQRGKLMTMLGAVVKGLSNIESILPAASALAIRHVSYGAKAEHYPVVGAALLWTLEKGLGDGWTPEVADAWTAAYTTLSGYMISEA 133          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: A0A2R4FCC9_9ACTN (Flavohemoprotein n=5 Tax=Plantactinospora TaxID=673534 RepID=A0A2R4FCC9_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 9.600e-6
Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTA 336
            F+++ F A P  R +F   +   + +LV  +G ++S+ +   Q    L  L A H K  V P  Y      L  T+   +G++WTE+    WTA    +  +M+  A
Sbjct:   24 FYSTLFLAHPDIRQMFPTNMAGQRDRLVTALGHVVSNVDQVDQLVGFLHSLGADHRKFAVRPEHYPAVGEALLATLAHFLGEHWTEDLAQDWTAAYGLVSKVMIDGA 130          
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Match: UPI001CE3617D (globin domain-containing protein n=1 Tax=Bradyrhizobium sp. CNPSo 4026 TaxID=2821403 RepID=UPI001CE3617D)

HSP 1 Score: 50.8 bits (120), Expect = 1.610e-5
Identity = 28/107 (26.17%), Postives = 47/107 (43.93%), Query Frame = 1
Query:   16 FFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRKKSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTALISSILHIMVPTA 336
            F+   FE  P  R +F   + + + KL+  +  +++   + A    +   LA  H   G  P  Y      L  T++K +GD WT E   +WTA   ++   M+  A
Sbjct:   27 FYDRLFEVAPAVRAMFPSDMTEQRRKLMATLAVVVNGLSNLASVLPAASALAKRHVSYGARPEHYPAVGGALLWTLEKGLGDAWTPEVAEAWTAAYGTLSGYMISEA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1244.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
Q07S70_RHOP56.480e-930.00Globin n=1 Tax=Rhodopseudomonas palustris (strain ... [more]
UPI001EDF804C7.440e-729.09globin domain-containing protein n=1 Tax=Yoonia sp... [more]
A0A848RX62_9MICO7.570e-727.27Hemin receptor n=1 Tax=Planctomonas sp. JC2975 Tax... [more]
UPI0012E27B3D2.050e-629.52globin domain-containing protein n=1 Tax=Oceanobac... [more]
A0A1C4XVE3_MICVI2.760e-628.04Flavohemoprotein n=1 Tax=Micromonospora viridifaci... [more]
A0A3N2P555_9ACTN2.770e-628.97Flavohemoprotein n=2 Tax=Micromonospora sp. HM5-17... [more]
A0A848E9L8_9PROT5.280e-630.84Hemin receptor n=2 Tax=Roseomonas TaxID=125216 Rep... [more]
A0A1M6M959_9BRAD5.870e-626.17Nitric oxide dioxygenase n=1 Tax=Bradyrhizobium la... [more]
A0A2R4FCC9_9ACTN9.600e-628.04Flavohemoprotein n=5 Tax=Plantactinospora TaxID=67... [more]
UPI001CE3617D1.610e-526.17globin domain-containing protein n=1 Tax=Bradyrhiz... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1244contigH-akashiwo_Contig1244:316158..316505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog652103.Rpdx1_1642
PFAMsGlobin
Model size348
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.66e-09
EggNOG OGsCOG1017@1|root,COG1017@2|Bacteria,1N66Q@1224|Proteobacteria,2UE3R@28211|Alphaproteobacteria,3K0ND@41294|Bradyrhizobiaceae
DescriptionBelongs to the globin family
Cds size348
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.5721874-CDS-H-akashiwo_Contig1244:316157..3165051681387130.5721874-CDS-H-akashiwo_Contig1244:316157..316505Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1244 316158..316505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1244.10.1prot_H-akashiwo_Contig1244.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1244 316158..316505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1244.10.1

>prot_H-akashiwo_Contig1244.10.1 ID=prot_H-akashiwo_Contig1244.10.1|Name=mRNA_H-akashiwo_Contig1244.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=116bp
KFSDDFFASFFEAVPTARMLFNGKLRQVQWKLVKMIGSMMSSKESAAQRK
KSLEELAALHGKRGVHPNQYAPFSVCLFETIKKRMGDYWTEEQENSWTAL
ISSILHIMVPTAVQQH
back to top

mRNA from alignment at H-akashiwo_Contig1244:316158..316505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1244.10.1 ID=mRNA_H-akashiwo_Contig1244.10.1|Name=mRNA_H-akashiwo_Contig1244.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:316158..316505+ (Heterosigma akashiwo CCMP452)
AAATTTTCTGACGATTTTTTCGCGTCCTTCTTTGAAGCAGTTCCAACAGC AAGGATGCTTTTCAATGGAAAATTACGACAAGTGCAATGGAAACTGGTCA AAATGATTGGCAGTATGATGTCCTCAAAAGAAAGCGCTGCTCAGCGGAAA AAGAGCCTAGAAGAACTCGCTGCATTACATGGGAAAAGGGGGGTTCACCC AAATCAATATGCTCCGTTTAGTGTTTGTTTGTTCGAGACGATTAAAAAGA GGATGGGAGACTACTGGACTGAAGAACAAGAAAATTCATGGACTGCTCTT ATATCGTCCATACTGCACATCATGGTTCCAACTGCAGTTCAGCAACAT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1244:316158..316505+

>mRNA_H-akashiwo_Contig1244.10.1 ID=mRNA_H-akashiwo_Contig1244.10.1|Name=mRNA_H-akashiwo_Contig1244.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:316158..316505+ (Heterosigma akashiwo CCMP452)
AAATTTTCTGACGATTTTTTCGCGTCCTTCTTTGAAGCAGTTCCAACAGC
AAGGATGCTTTTCAATGGAAAATTACGACAAGTGCAATGGAAACTGGTCA
AAATGATTGGCAGTATGATGTCCTCAAAAGAAAGCGCTGCTCAGCGGAAA
AAGAGCCTAGAAGAACTCGCTGCATTACATGGGAAAAGGGGGGTTCACCC
AAATCAATATGCTCCGTTTAGTGTTTGTTTGTTCGAGACGATTAAAAAGA
GGATGGGAGACTACTGGACTGAAGAACAAGAAAATTCATGGACTGCTCTT
ATATCGTCCATACTGCACATCATGGTTCCAACTGCAGTTCAGCAACAT
back to top