mRNA_H-akashiwo_Contig1242.1.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1242.1.2
Unique NamemRNA_H-akashiwo_Contig1242.1.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1242.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1242contigH-akashiwo_Contig1242:332589..334790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5970.XP_009160034.1
PFAMsNuc_sug_transp
Model size591
Max annot lvl4751|Fungi
KEGG koko:K15272
KEGG TC2.A.7.12
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0012505,GO:0015165,GO:0015711,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0072334,GO:0090481,GO:0097624,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505
Exons3
Evalue3.89e-05
EggNOG OGsCOG0697@1|root,KOG2234@2759|Eukaryota,38DP1@33154|Opisthokonta,3NW7T@4751|Fungi,3QQDH@4890|Ascomycota,20KJE@147545|Eurotiomycetes,3MWCC@451870|Chaetothyriomycetidae
DescriptionNucleotide-sugar transporter
Cds size423
COG categoryG
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.693016-UTR-H-akashiwo_Contig1242:332588..3326951681387129.693016-UTR-H-akashiwo_Contig1242:332588..332695Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1242 332589..332695 +
1681387129.740189-UTR-H-akashiwo_Contig1242:334729..3347901681387129.740189-UTR-H-akashiwo_Contig1242:334729..334790Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1242 334730..334790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.705017-CDS-H-akashiwo_Contig1242:332695..3328091681387129.705017-CDS-H-akashiwo_Contig1242:332695..332809Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1242 332696..332809 +
1681387129.7225666-CDS-H-akashiwo_Contig1242:334118..3341961681387129.7225666-CDS-H-akashiwo_Contig1242:334118..334196Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1242 334119..334196 +
1681387129.7314425-CDS-H-akashiwo_Contig1242:334498..3347291681387129.7314425-CDS-H-akashiwo_Contig1242:334498..334729Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1242 334499..334729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1242.1.2prot_H-akashiwo_Contig1242.1.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1242 332696..334729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1242.1.2

>prot_H-akashiwo_Contig1242.1.2 ID=prot_H-akashiwo_Contig1242.1.2|Name=mRNA_H-akashiwo_Contig1242.1.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=141bp
MTSGNLADFQMDWSMALVKWECLWCRSGCCRRTELPLSVILSCVASVFLF
DFVPTKIFVVGAVTVLAATYMYNNHGGVDSFIEESIACFCVRKRRNSMPE
EEFLLSIEEDVKDDMKMRSSIGTTPKSSSTTKNSFSLHNN*
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mRNA from alignment at H-akashiwo_Contig1242:332589..334790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1242.1.2 ID=mRNA_H-akashiwo_Contig1242.1.2|Name=mRNA_H-akashiwo_Contig1242.1.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2202bp|location=Sequence derived from alignment at H-akashiwo_Contig1242:332589..334790+ (Heterosigma akashiwo CCMP452)
CACGAATTTAATTTTGCGCCATCCCTAAATCGATATTGGCTGGTGGGTAG
ATATACTGAAGAGCAGCAGTACTGGATGATGGATTGATATCTGGTTGGGA
TTTTGGAATGACATCGGGAAATCTGGCAGATTTTCAGATGGATTGGAGTA
TGGCACTTGTAAAATGGGAATGCTTGTGGTGCAGGTCTGGTTGTTGCCGC
AGGACGGAACTCCCTCTTAGTGTGAGTGTATTATTGCCGAGACCTTTATA
TACTAAATTGAACACCATCACCATATATTGTAATATATATATCTGTGTGT
TTTTATATCATAATTGATTGGTCCCCCCCCCTCCAATCTTGCACCCTGGA
CTGCTGCAGCAGGCCTGCCTCCATTTTGTTGGTGTAGGCTTGCTTGAAGT
GCTGGCAGCCCCTCTCCTCCTTGTGCAAAAATACTGCCTTTTGCTGCGCT
CTTTGGCGACTGCTTCAGCACGAAAAGCCATCCTACGCTCTTGCGATACC
TCAGCACAACAATGACACCGTTTTTGCATGGATTCACCTCCTCCTGCCAA
CAGTTGTATTGAATTTGTAAGTTGCTTCCTGCACCTCTGACGATGTTGCC
ATGGTTTTTTCCAATCTTGAGGTATTGGCCAGTGACTGAAAACACCAAAC
CTTCCGCAGATAAGCCGAAGCCCTGCAGGCCTTACAAATATTTATGGGGT
TCATGTATTGAAGATGAAAATGTTATATTTTGTCACCCTTGTACTATGCC
AAGCGCTGTTTTAGATTTAACTATGGTAGATCATCGTTGTTCATGTTCTG
TTTGTCAGCAACAAGGAGTCAAAATTTCAGCGGAAGGTGGGATTACATGC
ACGGCACCAAGAGGAGATCGTGCTGTTTATGCAGTTGGAGCACAGGCCTT
TTTGGTGGGCAAGTGCTTCTTTTCTATAACACTTTTTTAATCTTTGGAAA
AAAAAAAAGACAAAGAAAGAAAAACACCACCAGCAGCAGGCAAGGTTCAA
GCCAAGGCTCTACTGTTGGTTGTTGTAAAGTAAACGGCGAAACAAAAACG
GATGCGATGATGGAGATACCGGCCGACTGAAACCTCCCTGTGGAGCCATC
GGTTGGATTTGCGCTTTGCTGTTCTCCTTCTAGGTTCCATTCCGTCTTCT
TCTTCTACTACATTTAAATGCATGATGGTGACAATGTAGGTCCCTGCGCA
TATCTCCGCGGTGACCCATCACTGCTCCTTCCTCGGTCGCCGCACAGCCA
GCCTCACTACCACAGTTGGCAAGAGGTCATAGACTGTTGTCTGGCTACCT
CACAGTGCATGCTTGCCTAACATAACTAGATGTTGTTTGTTGAGTCTGTA
AATATAATGTAGAAGAAGAAACAATACTGATGATGATGATTAAAAAAAAA
TCACATAAGGTGATGTTTATACAATGCTGTCATAGTATGCAGAGTAAGGT
AGCTTGTTCATTCGTTTTTGTGATGTACACATTTGAATATATTTGCACCT
GATCTATCACATTAACACAAAATATCCCAGGTGATATTGTCTTGTGTGGC
TTCAGTTTTTCTTTTTGACTTTGTACCTACCAAAATCTTTGTGGTTGGAG
CTGTCACAGTGAGTTTGCCTTTTTTTCTTTCACACCATTATTATTATAAC
TCACTTTATGACACGATGCAACACAATGGAGTGTAAGCTTTCACTAATAT
TTGAAGAAACTCTATTACACCAGGATGGCGTGAACTCATTTTGGCTGTTT
CCACAGCAGGCTGTCTTTCTGTGTTTTTGAAAGTCTAAGTGTTGCATCTC
TCCGACTATATACTTATGTATGATTGAACAACACGAAACATCCTGAACAT
GTCATAAGATAATCATCATAACTATGCTTCTAAACAATAAAAACATACTG
GGTGGTACAGGTTCTCGCTGCCACATACATGTATAACAACCATGGGGGAG
TGGATAGTTTTATTGAAGAGAGCATTGCGTGCTTCTGTGTGAGGAAAAGA
AGGAATAGCATGCCCGAAGAAGAGTTTTTGTTGTCCATAGAAGAGGATGT
AAAAGATGATATGAAAATGAGAAGCAGTATTGGCACCACACCAAAGAGTA
GTAGTACCACTAAAAATTCTTTTTCATTGCACAACAATTAAAGATGTCAT
AACAAAATCATACCATGGTCTGCAACACATCTCTTTAAATATTTGAAGCA
CA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1242:332589..334790+

>mRNA_H-akashiwo_Contig1242.1.2 ID=mRNA_H-akashiwo_Contig1242.1.2|Name=mRNA_H-akashiwo_Contig1242.1.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig1242:332589..334790+ (Heterosigma akashiwo CCMP452)
ATGACATCGGGAAATCTGGCAGATTTTCAGATGGATTGGAGTATGGCACT
TGTAAAATGGGAATGCTTGTGGTGCAGGTCTGGTTGTTGCCGCAGGACGG
AACTCCCTCTTAGTGTGATATTGTCTTGTGTGGCTTCAGTTTTTCTTTTT
GACTTTGTACCTACCAAAATCTTTGTGGTTGGAGCTGTCACAGTTCTCGC
TGCCACATACATGTATAACAACCATGGGGGAGTGGATAGTTTTATTGAAG
AGAGCATTGCGTGCTTCTGTGTGAGGAAAAGAAGGAATAGCATGCCCGAA
GAAGAGTTTTTGTTGTCCATAGAAGAGGATGTAAAAGATGATATGAAAAT
GAGAAGCAGTATTGGCACCACACCAAAGAGTAGTAGTACCACTAAAAATT
CTTTTTCATTGCACAACAATTAA
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