mRNA_H-akashiwo_Contig1240.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1240.7.1
Unique NamemRNA_H-akashiwo_Contig1240.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A6U4XVY4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XVY4_HEMAN)

HSP 1 Score: 96.3 bits (238), Expect = 9.580e-22
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            L NINLAFYPGAKIGVLGNNGAGKSTLMKIMAG DN++DGES  + WAK+GYL Q
Sbjct:  132 LDNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGTDNDYDGESAPAKWAKIGYLEQ 186
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: D7G5T9_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.950e-20
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            LK+++L+FYPGAKIGVLG+NG+GKSTLMKIMAG+D EF GES++S WAK+GYL Q
Sbjct:  146 LKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGVDTEFQGESRLSDWAKVGYLEQ 200
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A7S0E6L0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E6L0_9CRYP)

HSP 1 Score: 85.5 bits (210), Expect = 1.440e-19
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            L++INLAFYPGAKIGVLGNNGAGKSTLM+IM+G D  ++G++  + WAK+GYL Q
Sbjct:   40 LQDINLAFYPGAKIGVLGNNGAGKSTLMRIMSGQDENYEGDAAPARWAKIGYLEQ 94
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A835Z1K8_9STRA (ABC transporter ATP-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.590e-19
Identity = 39/61 (63.93%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    7 TPLKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQVKVI 189
            T LK+++L+FYPGAKIGVLG+NG+GKSTLMK+MAG++ E++GES++S WA +GYL Q  V+
Sbjct:   62 TVLKSVSLSFYPGAKIGVLGSNGSGKSTLMKVMAGVEKEYEGESRMSDWASVGYLPQEPVL 122
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: R1BMA9_EMIHU (ABC transporter domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BMA9_EMIHU)

HSP 1 Score: 85.9 bits (211), Expect = 6.760e-19
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    4 QTPLKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            +T +KNINL F+PGAKIG++G NGAGKSTLMKIMAG+D E+DGE   + WA +GYL+Q
Sbjct:  128 RTLIKNINLCFFPGAKIGLVGLNGAGKSTLMKIMAGVDTEYDGECTPAPWASVGYLAQ 185
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A2D8SSV8_9PLAN (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D8SSV8_9PLAN)

HSP 1 Score: 84.3 bits (207), Expect = 8.710e-19
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            LK IN+AFYPGAKIG+LG NGAGKSTLMKIMAGLD E++GE+++S    +GYL Q
Sbjct:   22 LKEINVAFYPGAKIGLLGRNGAGKSTLMKIMAGLDTEYEGEARLSEGFSVGYLEQ 76
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A3L7SAT3_9BACT (Energy-dependent translational throttle protein EttA n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7SAT3_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 8.900e-19
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            LKN+NLAFYPGAKIG+LG NGAGKSTLMKIMAG+D EFDGE++++    +GYL Q
Sbjct:   22 LKNVNLAFYPGAKIGLLGRNGAGKSTLMKIMAGIDKEFDGEARLAEGYTVGYLEQ 76
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A7S0QR77_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QR77_9CRYP)

HSP 1 Score: 87.8 bits (216), Expect = 9.070e-19
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            L+NINL+FYPGAKIGVLGNNGAGKSTLM+IMAG+D  ++G++  + WAK+GYL Q
Sbjct:   95 LQNINLSFYPGAKIGVLGNNGAGKSTLMRIMAGVDPNYEGDAAPARWAKIGYLEQ 149
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A7S3TQ94_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQ94_EMIHU)

HSP 1 Score: 85.9 bits (211), Expect = 1.520e-18
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    4 QTPLKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            +T +KNINL F+PGAKIG++G NGAGKSTLMKIMAG+D E+DGE   + WA +GYL+Q
Sbjct:  128 RTLIKNINLCFFPGAKIGLVGLNGAGKSTLMKIMAGVDTEYDGECTPAPWASVGYLAQ 185
[Close]
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Match: A0A7S4NC31_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NC31_GUITH)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-18
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   13 LKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISAWAKLGYLSQ 177
            L++INLAFYPGAKIGVLGNNGAGKSTLM+IM+G D  ++G++  + WAK+GYL Q
Sbjct:  131 LQDINLAFYPGAKIGVLGNNGAGKSTLMRIMSGQDENYEGDAAPARWAKIGYLEQ 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1240.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U4XVY4_HEMAN9.580e-2281.82Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
D7G5T9_ECTSI2.950e-2074.55ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
A0A7S0E6L0_9CRYP1.440e-1969.09Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A835Z1K8_9STRA2.590e-1963.93ABC transporter ATP-binding protein n=1 Tax=Tribon... [more]
R1BMA9_EMIHU6.760e-1967.24ABC transporter domain-containing protein n=2 Tax=... [more]
A0A2D8SSV8_9PLAN8.710e-1970.91Energy-dependent translational throttle protein Et... [more]
A0A3L7SAT3_9BACT8.900e-1972.73Energy-dependent translational throttle protein Et... [more]
A0A7S0QR77_9CRYP9.070e-1970.91Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S3TQ94_EMIHU1.520e-1867.24Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A7S4NC31_GUITH1.790e-1869.09Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1240contigH-akashiwo_Contig1240:260424..260803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5T9
PFAMsABC_tran,ABC_tran_Xtn
Model size189
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.84e-21
EggNOG OGsCOG0488@1|root,KOG0927@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-10_003770.1
DescriptionATPase activity
Cds size189
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.3920767-CDS-H-akashiwo_Contig1240:260423..2605221681387129.3920767-CDS-H-akashiwo_Contig1240:260423..260522Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1240 260424..260522 +
1681387129.4038024-CDS-H-akashiwo_Contig1240:260713..2608031681387129.4038024-CDS-H-akashiwo_Contig1240:260713..260803Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1240 260714..260803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1240.7.1prot_H-akashiwo_Contig1240.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1240 260424..260803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1240.7.1

>prot_H-akashiwo_Contig1240.7.1 ID=prot_H-akashiwo_Contig1240.7.1|Name=mRNA_H-akashiwo_Contig1240.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
KQTPLKNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGLDNEFDGESKISA
WAKLGYLSQVKVI
back to top

mRNA from alignment at H-akashiwo_Contig1240:260424..260803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1240.7.1 ID=mRNA_H-akashiwo_Contig1240.7.1|Name=mRNA_H-akashiwo_Contig1240.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=380bp|location=Sequence derived from alignment at H-akashiwo_Contig1240:260424..260803+ (Heterosigma akashiwo CCMP452)
AAACAGACTCCGCTGAAGAACATCAATCTCGCTTTTTATCCTGGAGCCAA
AATTGGAGTTCTTGGAAACAATGGTGCTGGTAAATCAACCCTCATGAAGG
TCAGTAATGACAGTAACTGGTGAAGAGGACTTTTTGGTATGGTTTGTGAG
GCTTAATCCCGGAAGAAGAATTTTTTGGACGGTGGATGTGGTCGACTAAG
ATGGATTTAAATCAAACAGCAGCGTTACTGTACTTTTAAAACTTTCTTCT
TCATCTGTACAAAAACATGCACCTTGATATTCTTGGACAGATCATGGCAG
GTCTGGACAATGAGTTTGATGGCGAGTCAAAAATTTCAGCTTGGGCAAAG
CTTGGCTACTTGTCGCAGGTAAAAGTCATC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1240:260424..260803+

>mRNA_H-akashiwo_Contig1240.7.1 ID=mRNA_H-akashiwo_Contig1240.7.1|Name=mRNA_H-akashiwo_Contig1240.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig1240:260424..260803+ (Heterosigma akashiwo CCMP452)
AAACAGACTCCGCTGAAGAACATCAATCTCGCTTTTTATCCTGGAGCCAA
AATTGGAGTTCTTGGAAACAATGGTGCTGGTAAATCAACCCTCATGAAGA
TCATGGCAGGTCTGGACAATGAGTTTGATGGCGAGTCAAAAATTTCAGCT
TGGGCAAAGCTTGGCTACTTGTCGCAGGTAAAAGTCATC
back to top