mRNA_H-akashiwo_Contig124.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig124.4.1
Unique NamemRNA_H-akashiwo_Contig124.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A6U3TXN2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TXN2_9STRA)

HSP 1 Score: 268 bits (686), Expect = 3.170e-86
Identity = 159/328 (48.48%), Postives = 198/328 (60.37%), Query Frame = 1
Query:    1 MKIRSSLLPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQASGGVD----------------YFFCSSWTVPPLLGIAYVVLGGILPRVFQSFLPS-------------------------KDTEK----------QAP---------KMEKSPSE---------LRNTALVAVTTTALIIKLSEILETNP-------GLLDSSEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLGSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFDCLEE 756
            MK+   +LP A T++KLF TG+ VGPVVDSLHNQCLL Y +API + WP  +   D                Y FCSSW VPPLLG+AYVVLGG+LPR+ Q  + +                         KDT K           +P         K+E++ ++         +RN ALVAV +TALIIKLSE LET           LD   +N+++M+ AA+ QWA LDGT+AALLAAT+TS+GGPLSELPFVA+G W YLPEA DYLPLS  G+    +  +F+ G G +Y+DLALSSITGPCYFAVTMDAIALGRWFD  ++
Sbjct:    1 MKVLPQILPRATTSSKLFITGATVGPVVDSLHNQCLLTYGIAPISIPWPSFTMPTDAAAAXXXXSDATVTSSYLFCSSWLVPPLLGVAYVVLGGVLPRLMQILIDNVSNVNDDASTISNNNDINTFTGNKTKDTRKGFFLRWKDKLSSPLQKLSKINIKIEENNNDGENRQYQTGMRNRALVAVLSTALIIKLSEFLETQQLDAFVTNTNLDIGMSNLIIMLFAALAQWATLDGTIAALLAATVTSIGGPLSELPFVASGCWSYLPEAADYLPLSQ-GTALGDIVGIFASGGGGDYRDLALSSITGPCYFAVTMDAIALGRWFDADDD 327          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A7R9ZTI6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTI6_9STRA)

HSP 1 Score: 265 bits (677), Expect = 3.200e-85
Identity = 152/293 (51.88%), Postives = 183/293 (62.46%), Query Frame = 1
Query:   28 NAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWP-------------------------QASG--GVDYFFCSSWTVPPLLGIAYVVLGGILPRVFQSFLPSKDTEKQ----APKMEK--SPSELRNTALVAVTTTALIIKLSEILETNPGLLDSS----------EANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLGSIPSQL-----------DALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFD 744
            + +TTAKLF TG  VGP+VDSLHNQCLL YD  PI L WP                         ++SG     Y+FCSSW VPPLLG AYVVLGG+LPR+ +S L S   +KQ     P   K  S  +LR  AL+AVTTTA+IIKLSE LET+PG+LD S            ++LVMIMA++ QWA+LD ++ AL+ AT+T++GGPL+ELPFV +G W Y+ +A DY PL NL SI                ALF      NY+DLALSSITGPCYFAV MDAIALGRWFD
Sbjct:    5 STSTTAKLFATGFTVGPIVDSLHNQCLLRYDFLPISLQWPIVLQQNQNAFGDIAVRSSTIAADAIESSGIHAYPYYFCSSWIVPPLLGFAYVVLGGLLPRILESILESLQIQKQEANATPSSSKVLSSQKLRTRALLAVTTTAMIIKLSEFLETHPGVLDGSGILHSPIETVSLSLLVMIMASLSQWALLDQSIVALVVATVTAIGGPLAELPFVGHGAWTYIDQAADYFPLQNLPSIAPTFASSDNLLLEMSQALFGT---SNYQDLALSSITGPCYFAVAMDAIALGRWFD 294          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A7S4K710_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K710_9STRA)

HSP 1 Score: 263 bits (673), Expect = 8.780e-85
Identity = 146/255 (57.25%), Postives = 171/255 (67.06%), Query Frame = 1
Query:   10 RSSLLPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQA-----SGGVDYFFCSSWTVPPLLGIAYVVLGGILPRVFQSFL----PSKDTEKQAPKMEKSP---------SELRNTALVAVTTTALIIKLSEILETNPGLLDSS-EANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLGSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMD 717
            ++ L P   TTAKLF  G+ VGPVVDS+HNQCLL YD+API + WP A     S    Y FCSSW +PPLLGIAYVVLGGILPR+FQ+ +    P+     + P  E            S LR   L+AV +T  IIKLS+ L+T+P  L  S EAN++ M  AA+ QW ILDGT AALLAA IT+VGGPLSELPFV+ G WHY+P A DYLPLS   S    LDA   W LG+ Y+DLALSSITGPCYFAVTMD
Sbjct:   38 KNMLFPKPQTTAKLFAVGATVGPVVDSIHNQCLLRYDIAPISIPWPGAAADATSAAASYAFCSSWLIPPLLGIAYVVLGGILPRLFQAAIDAASPALSGGSKVPVNESGAGSIPNLDGASVLRTKGLLAVVSTTAIIKLSDYLQTHPDALGGSPEANLVAMSAAALAQWTILDGTPAALLAAAITAVGGPLSELPFVSAGCWHYIPSAADYLPLSG-SSFGGGLDAATRWLLGDGYRDLALSSITGPCYFAVTMD 291          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A448ZGB0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGB0_9STRA)

HSP 1 Score: 255 bits (651), Expect = 3.770e-81
Identity = 148/289 (51.21%), Postives = 183/289 (63.32%), Query Frame = 1
Query:   34 ATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWP------------------QASGGVD----YFFCSSWTVPPLLGIAYVVLGGILPRVFQSF---LPSKDTEKQAPKME---------KSPSELRNTALVAVTTTALIIKLSEILETNPGLLDS--------SEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNL---------GSIPSQLDALFSWGLG-ENYKDLALSSITGPCYFAVTMDAIALGRWFD 744
            +T AKLF TG+ VGP+VDSLHNQCLL Y + PI L WP                   ASG +     +FFCSSWTVPPLLG AYVVLGG+LPR+ ++F   L +++  ++ P +E          S  ELR  A++AVT+TALIIKLSE+LET+PG+ D+          A++ VMI AAV QW +LDG++ ALL AT+T+VGGP+SELPFV +G W YL  A DYLPL N              S L  L     G  +Y++LALSSITGPCYFAV MDAIALGRWFD
Sbjct:    7 STAAKLFATGATVGPIVDSLHNQCLLRYQVLPICLEWPPAFLQKQTEMVGFAAIASDASGAISDQYPFFFCSSWTVPPLLGFAYVVLGGVLPRIAETFAELLSNQNPNQRPPLLETTAKASIPYSSSRELRTRAILAVTSTALIIKLSEVLETHPGIFDNLNVAHGHPEAASLCVMIAAAVLQWVLLDGSITALLVATVTAVGGPISELPFVGHGVWTYLEGAADYLPLQNFLVDSVATTASDDSSLLLQLLRVVFGTSSYRELALSSITGPCYFAVAMDAIALGRWFD 295          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: B7FZ91_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZ91_PHATC)

HSP 1 Score: 245 bits (626), Expect = 9.150e-78
Identity = 142/270 (52.59%), Postives = 179/270 (66.30%), Query Frame = 1
Query:   22 LPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQASGGVD----------YFFCSSWTVPPLLGIAYVVLGGILPRVFQSFL----------PSKDTEKQAPKMEKSPSELRNTALVAVTTTALIIKLSEILETNP-------GLL--DSSEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLGSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFD 744
            LP+A+T+AKLF  G+ +GPVVDSLHNQ LL Y++API + WP +  G            +FFCSSWTVPPLLG+AY+VLGGILPR+FQ  +          PS D  +    +E++   LR  A++AV +TA II+LS+   T+P       G L    +E +IL +++ A+ QWA+LDGTLAALL A+ITS+GGPLSELP VA   W YLP A DY PL N+   P     L +  LG++Y  LALSSITGPCYFAVTMDAIAL RWFD
Sbjct:   13 LPSASTSAKLFGVGATIGPVVDSLHNQVLLRYNIAPITIDWPSSWAGTSDSTLIATTASHFFCSSWTVPPLLGVAYIVLGGILPRLFQKGINAVSPSLTDQPSVDDSQNESTLERT---LRWKAILAVLSTAAIIQLSDFWTTHPDATRAVLGTLIEQPAEQHILALLLLALLQWAVLDGTLAALLVASITSIGGPLSELPLVAANVWTYLPSAADYTPLLNI-EWP-----LLASLLGDDYATLALSSITGPCYFAVTMDAIALARWFD 273          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A1E7EW93_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW93_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.250e-77
Identity = 144/320 (45.00%), Postives = 188/320 (58.75%), Query Frame = 1
Query:   28 NAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQASG-----------GVD------------YFFCSSWTVPPLLGIAYVVLGGILPRVFQSFLPS---KDTEKQAPKMEKSPSE--------------------------LRNTALVAVTTTALIIKLSEILETNPGLL---------------------DSSEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLG------SIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFDCL 750
            + +T  KLF+TG +VGP+VDSLHNQCLL YD+ PI + WP  +G           GVD            +FFCSSWTVPPLLGIAY++LGG+LPR+ +S L     K+ ++ +     +P +                          L+  A++AVTTTA+IIKLSE LET+  +L                       SEA++LVM+MAA  QWA+LDG++ ALL AT+T++GGP+SELPFV +G W YL EA +Y PL N+        +P QL  +  +G   NY DLA+S+ITGPCYFAV MDAIALGRWFD L
Sbjct:    9 STSTATKLFSTGFIVGPIVDSLHNQCLLRYDILPISVQWPTITGPASPVAPLLSFGVDNNPSIIDYHYYPFFFCSSWTVPPLLGIAYLILGGVLPRIVESILLQVKLKNEQRNSKSRATTPDDTIDTIDTSSXXXXSYSSTWQQQKQKQLQTRAILAVTTTAIIIKLSEYLETHHDILFVDNDTTTATTSMLLSYLNIHTHSEASLLVMLMAATIQWAVLDGSIIALLVATLTAIGGPISELPFVGHGVWTYLDEAANYFPLQNININNILQQLPEQLPQII-FGT-SNYHDLAISTITGPCYFAVAMDAIALGRWFDSL 326          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A1Z5JY77_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JY77_FISSO)

HSP 1 Score: 224 bits (572), Expect = 3.560e-70
Identity = 134/260 (51.54%), Postives = 169/260 (65.00%), Query Frame = 1
Query:    7 IRSSLLPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQASGGVDYFFCSSWTVPPLLGIAYVVLGGILPRVFQSFLPSKDTEK----QAPKMEKSPSE----LRNTALVAVTTTALIIKLSEILETNPGLLDSSEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLGSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFDCLEEED 762
            ++ S LP+  T+++LF TG+LVGP+VD LHNQCLLEY  API L+W +     D  FC+S  VPPLLGIAYVVLGG+LPR     +P++  ++    Q+P    +  E    LRN AL AV TTALIIKLSEILET      +++ N+++++  AV QWA LDGTL A L A+ITS+GGP SELPFVA   W YL  A D  PL +   +P  L            + L L+ ITGPCYFAVTMDAIALGRW+D L E +
Sbjct:    1 MKVSNLPSFYTSSRLFGTGALVGPLVDGLHNQCLLEYHKAPITLAWNE-----DPIFCTSLWVPPLLGIAYVVLGGVLPRFLSRNVPTRVNDRFLTTQSPNQILTLPERTILLRNKALWAVFTTALIIKLSEILETQS--FFATDRNVILLLGCAVLQWACLDGTLVAFLLASITSIGGPQSELPFVAADVWQYL--APDQFPLLSFQFLPDDL------------QQLGLNRITGPCYFAVTMDAIALGRWYDALRENE 239          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A1Z5K4P6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4P6_FISSO)

HSP 1 Score: 221 bits (562), Expect = 1.590e-68
Identity = 132/260 (50.77%), Postives = 165/260 (63.46%), Query Frame = 1
Query:    1 MKIRSSLLPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQASGGVDYFFCSSWTVPPLLGIAYVVLGGILPRVFQSFLPSKDTEK----QAPKMEKSPSE----LRNTALVAVTTTALIIKLSEILETNPGLLDSSEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNLGSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFDCLEE 756
            MK+ +  LP+  T+++LF TG+L+GP+VD LHNQCLLEY  API ++W       D  FC+S  VPPLLGIAYVVLGG+LPR     +P+  T++    Q P    +  E    LRN AL AV TTALIIKLSE+LET      ++  N+++++  AV QW  LDGTL ALL A+ITS+GGPLSELPFVA   W Y   + D  PL     +P  L            + L L+ ITGPCYFAVTMDAIALGRW+D L E
Sbjct:    1 MKVNN--LPSLFTSSRLFGTGALLGPLVDGLHNQCLLEYHRAPITVAWND-----DPIFCTSLWVPPLLGIAYVVLGGVLPRALSQIVPTNVTDRFLTTQYPNQSITVQERTMFLRNKALWAVFTTALIIKLSELLETQS--FFAANFNVILLLCCAVLQWVCLDGTLVALLLASITSIGGPLSELPFVAANVWQYT--SPDQFPLLPFQFVPDDL------------QQLGLNRITGPCYFAVTMDAIALGRWYDALWE 237          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A7S2EFV6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFV6_TRICV)

HSP 1 Score: 214 bits (545), Expect = 2.210e-66
Identity = 117/199 (58.79%), Postives = 148/199 (74.37%), Query Frame = 1
Query:   19 LLPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQASGGVDYFFCSSWTVPPLLGIAYVVLGGILPRVFQSFL---PSKDTEKQAPKMEKSPSE-LRNTALVAVTTTALIIKLSEILETNPGLL--DSSEANILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLS 597
            ++P  +T+ KLF TG+ VGP+VDS+HNQCLL+YDLAPI +  P  S    Y  C+SW +PPLLGIAYVVLGG+LPR+FQS L   P  D      K+ ++ +E LR   LVAV+TTALIIKLS+ L+T+PG      +EAN+ VM +AA+ QWA+LD T AALLAA+IT+VGGPLSELPFVA+G WHY+  A DYLPL+
Sbjct:   13 IVPKRSTSLKLFATGATVGPLVDSIHNQCLLQYDLAPISIPSPIESHA-PYLLCTSWLIPPLLGIAYVVLGGVLPRLFQSVLGAVPISDKRGSVGKVGEATAETLRMKGLVAVSTTALIIKLSDYLQTHPGEAFGGGAEANVAVMALAALSQWALLDRTPAALLAASITAVGGPLSELPFVAHGCWHYISAAADYLPLA 210          
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Match: A0A7S1GJQ6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ6_CYCTE)

HSP 1 Score: 174 bits (442), Expect = 1.630e-51
Identity = 98/176 (55.68%), Postives = 125/176 (71.02%), Query Frame = 1
Query:  286 QAPKMEKSPSE--LRNT------ALVAVTTTALIIKLSEILETNPGLLDSSEA----NILVMIMAAVGQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSNL----GSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFDCLEEEDK 765
            Q P    SPS   + NT      A+ AV TTA+II+LS+ LET+    D +      N+ +M+MAA+ QWA+LDGTLAALL+A++ S+GGPLSELPFVA+GFWHYLP+AGDYLPL+ +    G++ + L       LG NY DLALSSITGPCYFAVTMDAIALGRWFD  +++ +
Sbjct:    2 QLPTSSSSPSSSFMSNTLVARFKAVAAVLTTAMIIELSQYLETSQSFHDDTSTFLFGNVGIMLMAALSQWALLDGTLAALLSASLVSIGGPLSELPFVAHGFWHYLPQAGDYLPLAGVEWGNGNLVAGL-------LGTNYHDLALSSITGPCYFAVTMDAIALGRWFDTNDDKPR 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig124.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U3TXN2_9STRA3.170e-8648.48Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9ZTI6_9STRA3.200e-8551.88Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
A0A7S4K710_9STRA8.780e-8557.25Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A448ZGB0_9STRA3.770e-8151.21Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7FZ91_PHATC9.150e-7852.59Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7EW93_9STRA2.250e-7745.00Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A1Z5JY77_FISSO3.560e-7051.54Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K4P6_FISSO1.590e-6850.77Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2EFV6_TRICV2.210e-6658.79Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1GJQ6_CYCTE1.630e-5155.68Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig124contigH-akashiwo_Contig124:609560..610327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr35785
Model size768
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-78
EggNOG OGs2C7IE@1|root,2R7J2@2759|Eukaryota,2XGY8@2836|Bacillariophyta
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.1171885-CDS-H-akashiwo_Contig124:609559..6103271681387129.1171885-CDS-H-akashiwo_Contig124:609559..610327Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig124 609560..610327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig124.4.1prot_H-akashiwo_Contig124.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig124 609560..610327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig124.4.1

>prot_H-akashiwo_Contig124.4.1 ID=prot_H-akashiwo_Contig124.4.1|Name=mRNA_H-akashiwo_Contig124.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=256bp
MKIRSSLLPNAATTAKLFTTGSLVGPVVDSLHNQCLLEYDLAPIGLSWPQ
ASGGVDYFFCSSWTVPPLLGIAYVVLGGILPRVFQSFLPSKDTEKQAPKM
EKSPSELRNTALVAVTTTALIIKLSEILETNPGLLDSSEANILVMIMAAV
GQWAILDGTLAALLAATITSVGGPLSELPFVANGFWHYLPEAGDYLPLSN
LGSIPSQLDALFSWGLGENYKDLALSSITGPCYFAVTMDAIALGRWFDCL
EEEDK*
back to top

mRNA from alignment at H-akashiwo_Contig124:609560..610327-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig124.4.1 ID=mRNA_H-akashiwo_Contig124.4.1|Name=mRNA_H-akashiwo_Contig124.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=768bp|location=Sequence derived from alignment at H-akashiwo_Contig124:609560..610327- (Heterosigma akashiwo CCMP452)
ATGAAGATCAGATCATCTTTGCTGCCTAACGCGGCTACCACTGCAAAACT ATTCACCACAGGTTCACTGGTAGGACCTGTTGTTGATTCTCTCCACAATC AATGCCTGTTGGAATATGACCTCGCTCCGATTGGTTTGTCTTGGCCACAA GCCAGTGGAGGTGTCGACTACTTCTTTTGCTCTAGTTGGACAGTTCCACC TCTTCTTGGAATTGCTTACGTTGTCCTGGGTGGGATTCTTCCAAGGGTAT TCCAAAGCTTCCTGCCATCTAAGGACACAGAAAAACAAGCCCCCAAAATG GAAAAAAGCCCTTCTGAATTACGAAACACTGCACTGGTTGCTGTTACGAC GACAGCCCTTATCATAAAATTGTCAGAGATCCTAGAAACAAATCCTGGTT TGTTAGACTCTTCAGAGGCAAACATTCTTGTGATGATTATGGCAGCTGTT GGGCAGTGGGCCATTTTAGATGGCACATTGGCAGCTCTGTTGGCAGCAAC AATAACATCGGTTGGTGGTCCTTTATCAGAGCTCCCATTTGTTGCAAATG GCTTCTGGCATTATTTGCCTGAAGCTGGGGACTATCTTCCTCTCTCAAAC CTTGGCAGCATTCCAAGTCAACTGGATGCGCTCTTCAGCTGGGGCTTGGG TGAAAACTACAAAGACCTTGCTCTTTCAAGCATTACTGGCCCATGCTACT TCGCAGTTACAATGGACGCCATAGCATTGGGTCGATGGTTTGATTGTCTT GAAGAAGAAGATAAATGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig124:609560..610327-

>mRNA_H-akashiwo_Contig124.4.1 ID=mRNA_H-akashiwo_Contig124.4.1|Name=mRNA_H-akashiwo_Contig124.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=768bp|location=Sequence derived from alignment at H-akashiwo_Contig124:609560..610327- (Heterosigma akashiwo CCMP452)
ATGAAGATCAGATCATCTTTGCTGCCTAACGCGGCTACCACTGCAAAACT
ATTCACCACAGGTTCACTGGTAGGACCTGTTGTTGATTCTCTCCACAATC
AATGCCTGTTGGAATATGACCTCGCTCCGATTGGTTTGTCTTGGCCACAA
GCCAGTGGAGGTGTCGACTACTTCTTTTGCTCTAGTTGGACAGTTCCACC
TCTTCTTGGAATTGCTTACGTTGTCCTGGGTGGGATTCTTCCAAGGGTAT
TCCAAAGCTTCCTGCCATCTAAGGACACAGAAAAACAAGCCCCCAAAATG
GAAAAAAGCCCTTCTGAATTACGAAACACTGCACTGGTTGCTGTTACGAC
GACAGCCCTTATCATAAAATTGTCAGAGATCCTAGAAACAAATCCTGGTT
TGTTAGACTCTTCAGAGGCAAACATTCTTGTGATGATTATGGCAGCTGTT
GGGCAGTGGGCCATTTTAGATGGCACATTGGCAGCTCTGTTGGCAGCAAC
AATAACATCGGTTGGTGGTCCTTTATCAGAGCTCCCATTTGTTGCAAATG
GCTTCTGGCATTATTTGCCTGAAGCTGGGGACTATCTTCCTCTCTCAAAC
CTTGGCAGCATTCCAAGTCAACTGGATGCGCTCTTCAGCTGGGGCTTGGG
TGAAAACTACAAAGACCTTGCTCTTTCAAGCATTACTGGCCCATGCTACT
TCGCAGTTACAATGGACGCCATAGCATTGGGTCGATGGTTTGATTGTCTT
GAAGAAGAAGATAAATGA
back to top