mRNA_H-akashiwo_Contig124.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig124.11.1
Unique NamemRNA_H-akashiwo_Contig124.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 537 bits (1383), Expect = 2.740e-189
Identity = 263/270 (97.41%), Postives = 267/270 (98.89%), Query Frame = 1
Query:    1 LLERIDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            LLERIDADLDKEKRTQM++LLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEIT DLLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAREMFDNLAE YYFTSLDMLWAYWSVPLREGDK KTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDP+KIEAV
Sbjct:   47 LLERIDADLDKEKRTQMMELLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAV 316          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 536 bits (1381), Expect = 3.030e-186
Identity = 263/270 (97.41%), Postives = 266/270 (98.52%), Query Frame = 1
Query:    1 LLERIDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            LLERIDADLDKEK+ QMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEIT DLLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAREMFDNLAE YYFTSLDMLWAYWSVPLREGDK KTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDP+KIEAV
Sbjct:   47 LLERIDADLDKEKKAQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAV 316          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 310 bits (794), Expect = 1.870e-102
Identity = 145/178 (81.46%), Postives = 162/178 (91.01%), Query Frame = 1
Query:  277 MVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            MV KKTGETRMCLDLR+LNAITTP+KFPLPT REMFD L   YYF+SLDMLWAYWSVPLR+ DK KTAFTVRN+KYAFNVMCFGLTNAPATFSHLVNKVFQGCQ++FALCFLDDVLCY+  +F+LHL  L +IF RM  ANLKFKLPKC+FGAAQ+PFLGH+A+REGLKPDP+KIEA+
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAI 178          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: A0A147BIK4_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A147BIK4_IXORI)

HSP 1 Score: 216 bits (550), Expect = 2.170e-60
Identity = 106/271 (39.11%), Postives = 166/271 (61.25%), Query Frame = 1
Query:    1 LLERIDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGD-KVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            LL  ID+DL+   + Q+++LL ++Q  F       +TT  + H I +   ++ + +PYR+SP++ +  ++   ++L++G+I  SSS +++P+V+V KK G  R C+D R LN IT    +PLP   +  D L    YF+SLD+   YW +P++E DK KTAF   +    FNVM FGL NAPATF  +++ V +G ++   LC+LDD++ +S R F  HL  LS++   +  ANL     KC F + QI  LGHL  ++G++PDP K++AV
Sbjct:  238 LLNAIDSDLEDVHKKQIINLLTRFQSCFDVYTSFTSTTKSVAHTINTPPGEIVHQRPYRVSPSERRTIDQEVSEMLRKGIIRPSSSPWSSPVVLVRKKDGSIRFCVDYRRLNKITRKDVYPLPRIDDTLDTLQGAEYFSSLDLKSGYWQIPMKEEDKEKTAFITTDGLXEFNVMPFGLCNAPATFERMIDNVLRGLKWHICLCYLDDIIIFS-RTFNDHLLRLSEVLVCLAKANLLLNTKKCRFASRQIKILGHLVDKDGIRPDPDKLKAV 507          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: A0A6G5A8Y6_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A8Y6_RHIMP)

HSP 1 Score: 204 bits (518), Expect = 4.660e-60
Identity = 103/269 (38.29%), Postives = 163/269 (60.59%), Query Frame = 1
Query:    7 ERIDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAY-VKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            + ID++L   +R ++++LL +++  F   +   + T  + H I +G +     +PYR+S A+ +  +E   D+LK+G+I  S+S + +P+V+V KK G  R C+D R LN IT    +PLP   +  D L    +F+SLD+   YW VP+ EGD+ KTAF   +  Y F VM FGL NAPATF  +++ V +G +++  LC+LDD++ +S  +F  HL  L Q+   +  A L+  L KC FGA ++  LGH+ S++G+ PDP K+ AV
Sbjct:   67 DAIDSELAPTQREEIINLLLRFRSSFDRDQSGLSRTSAVVHRIDTGQQAPLRQRPYRVSSAERRVIDEQVDDMLKRGIIEPSNSPWASPVVLVRKKDGSIRFCVDYRRLNKITRKDVYPLPRIDDALDCLQGAEFFSSLDLRSGYWQVPMAEGDRPKTAFVTPDGLYEFTVMPFGLCNAPATFERMMDTVLRGLKWKTCLCYLDDIVVFSS-DFATHLSRLEQVLTCLSTARLQLNLKKCHFGARKLVILGHVVSKDGILPDPTKLNAV 334          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: L7LV08_RHIPC (Putative tick transposon n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LV08_RHIPC)

HSP 1 Score: 206 bits (524), Expect = 1.250e-57
Identity = 106/267 (39.70%), Postives = 162/267 (60.67%), Query Frame = 1
Query:   13 IDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQS-GDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            I+ DL   +R  +L+LL ++Q  F A       T + +H I + G +V   +PYR+S A+ +  EE   D+LK+ +I  S+S++++P+V+V KK G  R C+D RALN IT    +P+P   +  D+L    YF++LD+   YW +P+ E DK KTAF+  +  Y FNVM FGL NAPATF  +++ V +G +++  LC+LDD++ +S   F  HL  L ++   +  A L+    KC FG   I  LGHL +++G++PDP KI AV
Sbjct:  234 INPDLPASQRAALLELLTKHQASFDANASALGQTTVASHRIDTDGQRVVRRRPYRVSLAERKIIEENVADMLKRNIIRPSASSWSSPVVLVQKKDGSVRFCVDYRALNKITRKDVYPMPRIDDALDSLQGAQYFSTLDLRSGYWQIPMDEADKEKTAFSTPDGLYEFNVMPFGLCNAPATFERMIDTVLRGLKWKTCLCYLDDIVVFSS-TFADHLQRLDEVLTCLANAGLQLNTKKCHFGNTTIKVLGHLVNKDGIQPDPDKISAV 499          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: UPI001CF1BC7F (uncharacterized protein LOC122963367 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1BC7F)

HSP 1 Score: 206 bits (525), Expect = 1.650e-57
Identity = 104/266 (39.10%), Postives = 161/266 (60.53%), Query Frame = 1
Query:   16 DADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYV-KPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            D+ L +  + +  DL   Y+DVF   +     T L+ H I +GD +    +PYR SP   Q+ +    D+L++G+I ES S +++P+V+V KK G  R C+DLR +NA+T    FP+P   +  D L+ T YF++LD+   YW + +    + KTAF   N  Y FNVM FGLTN+ A+F  L+  + +G +Y FAL ++DD++ +S ++   HL HL ++F+R+R AN+K    KC F   +I +LGH+ + EG+ PDP K+E V
Sbjct:  557 DSVLSEADKIKFGDLFQSYRDVFAFTDDQLGKTSLVQHVIDTGDALPIKQRPYRTSPKCKQEIDRQVEDMLQKGIIRESVSPWSSPVVLVKKKDGSFRFCVDLRKVNAVTRKDSFPMPLVSDTLDALSGTKYFSTLDLKSGYWQIEMHPESREKTAFVTHNGLYEFNVMPFGLTNSGASFQCLMGHILRGLEYRFALIYIDDIVIFS-KSIDEHLTHLEEVFRRLREANVKLNPKKCSFVKQRIEYLGHVVTPEGIFPDPGKVEVV 821          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: A0A131XQ77_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A131XQ77_IXORI)

HSP 1 Score: 206 bits (524), Expect = 3.180e-57
Identity = 105/271 (38.75%), Postives = 159/271 (58.67%), Query Frame = 1
Query:    1 LLERIDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGD-KVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            L   I+  L  +++ ++L LL  +Q  F +   I      ++H I +G+      +PYR+SP + +K E    ++LK+ VI  S+S++++P+V+V KK G  R C+D R LN IT    +P+P   +  D L    Y+TSLD+   YW +P+ E DK KTAF   +  + FNVM FGL NAPATF  +++ + +G ++   LC+LDDV+ +S   F  HL  LS++   +  A L+    KC F A QI  LGHL SR+G++PDP K+ AV
Sbjct:    1 LRSTINPSLSDDQKRRLLLLLKSFQHSFDSHTDILGRAHSVSHTIDTGNANPVRHRPYRISPVERRKIENEVSEMLKRNVIRPSNSSWSSPVVLVRKKDGSVRFCVDYRKLNNITQKDSYPMPRIDDALDTLQGAKYYTSLDLRSGYWQIPMSESDKAKTAFVTPDGLFEFNVMPFGLCNAPATFERMIDSILRGLKWRTCLCYLDDVIVFSS-TFDEHLDRLSEVLSCISGAGLQLNTKKCHFAATQIKVLGHLVSRDGIRPDPEKVRAV 270          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: UPI0009E43DEE (uncharacterized protein LOC110064491 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E43DEE)

HSP 1 Score: 207 bits (526), Expect = 4.520e-57
Identity = 111/264 (42.05%), Postives = 157/264 (59.47%), Query Frame = 1
Query:   25 LDKEKRTQMLDLLWQYQDVFK-APEGIPTTTPLITHAIQSGDKVAY-VKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            L + ++ Q+  L+ +Y+D+F  +PE +  T   + H I +GD     ++PYR+  AQ ++ E+   ++L QGVI  S+S + +P+V+V K  G  R C D R +NAIT    +PLP   E  D LA T YF+S+D++  YW + +    + KTAF      + FNVM FGL NAP+ F  L+  V +G  +  AL +LDDVL YS R F  HL HL  +F R R A LK K  KC FG   + FLGH+ S EG++PDP KIEA+
Sbjct:  226 LTESQQKQLQQLINEYRDIFALSPEELGRTN-WVQHTIDTGDASPIRMRPYRVPEAQKERIEKCIDEMLDQGVIRPSASPWASPVVLVKKPDGSDRFCADFRRVNAITKKDSYPLPRIAESLDALAGTQYFSSMDLMSGYWQIEMDPESREKTAFVTHAGLFEFNVMAFGLCNAPSCFQRLMECVLRGLNWRIALIYLDDVLVYS-RTFDEHLQHLRLVFDRFREAGLKLKPKKCSFGQKNVKFLGHVISPEGVQPDPAKIEAI 487          
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Match: L7MMH8_RHIPC (RNA-directed DNA polymerase (Fragment) n=2 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MMH8_RHIPC)

HSP 1 Score: 206 bits (524), Expect = 5.160e-57
Identity = 106/267 (39.70%), Postives = 162/267 (60.67%), Query Frame = 1
Query:   13 IDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQS-GDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVPLREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPRKIEAV 810
            I+ DL   +R  +L+LL ++Q  F A       T + +H I + G +V   +PYR+S A+ +  EE   D+LK+ +I  S+S++++P+V+V KK G  R C+D RALN IT    +P+P   +  D+L    YF++LD+   YW +P+ E DK KTAF+  +  Y FNVM FGL NAPATF  +++ V +G +++  LC+LDD++ +S   F  HL  L ++   +  A L+    KC FG   I  LGHL +++G++PDP KI AV
Sbjct:  234 INPDLPASQRAALLELLTKHQASFDANASALGQTTVASHRIDTDGQRVVRRRPYRVSLAERKIIEENVADMLKRNIIRPSASSWSSPVVLVQKKDGSVRFCVDYRALNKITRKDVYPMPRIDDALDSLQGAQYFSTLDLRSGYWQIPMDEADKEKTAFSTPDGLYEFNVMPFGLCNAPATFERMIDTVLRGLKWKTCLCYLDDIVVFSS-TFADHLQRLDEVLTCLANAGLQLNTKKCHFGNTTIKVLGHLVNKDGIQPDPDKISAV 499          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig124.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK2.740e-18997.41Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK3.030e-18697.41Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK1.870e-10281.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A147BIK4_IXORI2.170e-6039.11RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
A0A6G5A8Y6_RHIMP4.660e-6038.29Putative tick transposon (Fragment) n=1 Tax=Rhipic... [more]
L7LV08_RHIPC1.250e-5739.70Putative tick transposon n=1 Tax=Rhipicephalus pul... [more]
UPI001CF1BC7F1.650e-5739.10uncharacterized protein LOC122963367 n=2 Tax=Acrop... [more]
A0A131XQ77_IXORI3.180e-5738.75RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
UPI0009E43DEE4.520e-5742.05uncharacterized protein LOC110064491 n=1 Tax=Orbic... [more]
L7MMH8_RHIPC5.160e-5739.70RNA-directed DNA polymerase (Fragment) n=2 Tax=Rhi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig124contigH-akashiwo_Contig124:1029994..1030803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009797113.1
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve
Model size810
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.36e-55
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta,44PGP@71274|asterids
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size810
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.277372-CDS-H-akashiwo_Contig124:1029993..10308031681387129.277372-CDS-H-akashiwo_Contig124:1029993..1030803Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig124 1029994..1030803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig124.11.1prot_H-akashiwo_Contig124.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig124 1029994..1030803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig124.11.1

>prot_H-akashiwo_Contig124.11.1 ID=prot_H-akashiwo_Contig124.11.1|Name=mRNA_H-akashiwo_Contig124.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=270bp
LLERIDADLDKEKRTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDK
VAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGE
TRMCLDLRALNAITTPSKFPLPTAREMFDNLAETYYFTSLDMLWAYWSVP
LREGDKFKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFA
LCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPF
LGHLASREGLKPDPRKIEAV
back to top

mRNA from alignment at H-akashiwo_Contig124:1029994..1030803-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig124.11.1 ID=mRNA_H-akashiwo_Contig124.11.1|Name=mRNA_H-akashiwo_Contig124.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=810bp|location=Sequence derived from alignment at H-akashiwo_Contig124:1029994..1030803- (Heterosigma akashiwo CCMP452)
CTTTTAGAGCGGATTGACGCTGATCTGGACAAGGAGAAGAGGACACAGAT GCTGGATCTATTGTGGCAATATCAGGACGTATTCAAGGCACCAGAGGGGA TACCAACTACAACACCTTTAATCACTCATGCTATACAGAGTGGGGACAAG GTGGCTTATGTGAAACCATACAGGATGTCACCAGCACAGCTGCAGAAAGC AGAAGAGATCACAGGAGATTTACTGAAGCAAGGGGTAATCTCAGAGAGTT CAAGTAACTTCAACGCACCAATAGTAATGGTGGCTAAGAAGACTGGGGAG ACACGAATGTGCTTAGACTTAAGAGCTCTGAACGCTATTACAACGCCATC AAAGTTTCCTTTACCAACAGCCAGGGAGATGTTTGACAATTTGGCGGAGA CATACTACTTTACCAGCTTGGACATGCTATGGGCATATTGGAGCGTTCCG CTGAGAGAAGGGGACAAGTTCAAGACAGCTTTTACTGTGAGGAACAGAAA GTATGCATTCAACGTGATGTGCTTTGGATTAACAAATGCACCAGCTACTT TCAGCCATTTGGTAAACAAGGTTTTTCAGGGGTGCCAGTATGAGTTTGCA CTATGTTTTCTGGACGACGTACTGTGCTACTCACCCAGGAACTTCACATT ACATCTGTACCATTTGAGTCAGATATTCAAGAGGATGAGAGCAGCCAACT TGAAGTTCAAATTGCCCAAATGCATATTTGGAGCAGCGCAGATTCCTTTT CTGGGACATTTGGCGTCGAGGGAAGGGTTGAAACCAGACCCAAGGAAGAT TGAAGCAGTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig124:1029994..1030803-

>mRNA_H-akashiwo_Contig124.11.1 ID=mRNA_H-akashiwo_Contig124.11.1|Name=mRNA_H-akashiwo_Contig124.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=810bp|location=Sequence derived from alignment at H-akashiwo_Contig124:1029994..1030803- (Heterosigma akashiwo CCMP452)
CTTTTAGAGCGGATTGACGCTGATCTGGACAAGGAGAAGAGGACACAGAT
GCTGGATCTATTGTGGCAATATCAGGACGTATTCAAGGCACCAGAGGGGA
TACCAACTACAACACCTTTAATCACTCATGCTATACAGAGTGGGGACAAG
GTGGCTTATGTGAAACCATACAGGATGTCACCAGCACAGCTGCAGAAAGC
AGAAGAGATCACAGGAGATTTACTGAAGCAAGGGGTAATCTCAGAGAGTT
CAAGTAACTTCAACGCACCAATAGTAATGGTGGCTAAGAAGACTGGGGAG
ACACGAATGTGCTTAGACTTAAGAGCTCTGAACGCTATTACAACGCCATC
AAAGTTTCCTTTACCAACAGCCAGGGAGATGTTTGACAATTTGGCGGAGA
CATACTACTTTACCAGCTTGGACATGCTATGGGCATATTGGAGCGTTCCG
CTGAGAGAAGGGGACAAGTTCAAGACAGCTTTTACTGTGAGGAACAGAAA
GTATGCATTCAACGTGATGTGCTTTGGATTAACAAATGCACCAGCTACTT
TCAGCCATTTGGTAAACAAGGTTTTTCAGGGGTGCCAGTATGAGTTTGCA
CTATGTTTTCTGGACGACGTACTGTGCTACTCACCCAGGAACTTCACATT
ACATCTGTACCATTTGAGTCAGATATTCAAGAGGATGAGAGCAGCCAACT
TGAAGTTCAAATTGCCCAAATGCATATTTGGAGCAGCGCAGATTCCTTTT
CTGGGACATTTGGCGTCGAGGGAAGGGTTGAAACCAGACCCAAGGAAGAT
TGAAGCAGTG
back to top