mRNA_H-akashiwo_Contig1238.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1238.1.1
Unique NamemRNA_H-akashiwo_Contig1238.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A7S3Y431_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y431_HETAK)

HSP 1 Score: 236 bits (603), Expect = 4.920e-75
Identity = 118/136 (86.76%), Postives = 125/136 (91.91%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            VLEA+GLGEV  KYTPCAPGVHLSS+SSG++VDV+TYQSLVGA QFI  FRPDISFAVGKLSKFLVSPNL HMDAALYLAGYLRRTASKGMVFGGARDY V V SDS+HGNCP TG+STSGL VFVGGSLIVHKSK
Sbjct:  154 VLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSK 289          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A7S4DC66_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC66_HETAK)

HSP 1 Score: 236 bits (603), Expect = 7.030e-73
Identity = 118/136 (86.76%), Postives = 125/136 (91.91%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            VLEA+GLGEV  KYTPCAPGVHLSS+SSG++VDV+TYQSLVGA QFI  FRPDISFAVGKLSKFLVSPNL HMDAALYLAGYLRRTASKGMVFGGARDY V V SDS+HGNCP TG+STSGL VFVGGSLIVHKSK
Sbjct:  351 VLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSK 486          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A7S3Y454_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y454_HETAK)

HSP 1 Score: 236 bits (603), Expect = 1.900e-71
Identity = 118/136 (86.76%), Postives = 125/136 (91.91%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            VLEA+GLGEV  KYTPCAPGVHLSS+SSG++VDV+TYQSLVGA QFI  FRPDISFAVGKLSKFLVSPNL HMDAALYLAGYLRRTASKGMVFGGARDY V V SDS+HGNCP TG+STSGL VFVGGSLIVHKSK
Sbjct:  527 VLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSK 662          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A6V1VJZ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VJZ2_HETAK)

HSP 1 Score: 194 bits (493), Expect = 1.110e-55
Identity = 88/136 (64.71%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            +L+ +GL +V  K+TPCAPGVH+S++SS  + D+  YQ+LVGA  F+  FRPDI+F+VGKLS+FL  PN  HMDAALYLAGYLRRT  KGMVFGG+RDY + + SDS+HGNCP +G+STSG+AVF G SLI+HKSK
Sbjct:  483 ILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINFSVGKLSRFLACPNADHMDAALYLAGYLRRTPGKGMVFGGSRDYRIRIISDSDHGNCPDSGRSTSGIAVFAGDSLIIHKSK 618          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A6V1TGB8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TGB8_HETAK)

HSP 1 Score: 160 bits (404), Expect = 8.100e-44
Identity = 76/138 (55.07%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGG--ARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            +LE +GL     K+TPCAPGV +S +S+  + D+D YQ LVG  QFI  FR D +FAVG+LS++L  PN  H +AA YLAGYLRRTA  GMVFGG     Y + + +DS+HG CP T +STSG++V++G SLI+HKSK
Sbjct:  306 LLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFAVGRLSRYLSCPNKDHQEAAEYLAGYLRRTADMGMVFGGRGGNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSK 443          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: UPI00142E4CC0 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E4CC0)

HSP 1 Score: 95.9 bits (237), Expect = 2.790e-21
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            +L+  GL   +    P  P V LSS + G  VD + Y+ LVG   ++   RPDI+FAV KLS+F  +P   H+ A L +  Y++    +G+ +    +  +  F+D++ G+C  T +STSG  +F+G SLI  KSK
Sbjct:  133 LLDETGLLGCKPSSIPMDPSVKLSSETGGDFVDAEAYRRLVGRLMYLQITRPDITFAVNKLSQFSCAPRDSHLKALLKVLHYIKGIVGQGLFYSSKAEMQIQTFADADWGSCQDTRRSTSGSCIFLGTSLIAWKSK 268          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A2Z6PIW5_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PIW5_TRISU)

HSP 1 Score: 98.2 bits (243), Expect = 3.670e-21
Identity = 54/136 (39.71%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            +LE  GL   +   TP  P + LS +S     D   Y+ LVG   ++   RP+I++AV KLS+FL +P   HM A L++  YL+    KG+ FG     ++  FSDS+ G CP T +ST+G   F+G SL+  KSK
Sbjct:  831 LLEDTGLLGTKPCSTPMQPHLQLSKDSGTLLTDPTAYRRLVGRLLYLTHSRPEIAYAVSKLSQFLSTPTNDHMLAGLHVLKYLKNNPGKGLFFGSTSTISLKGFSDSDWGACPDTRRSTTGYCFFIGHSLVSWKSK 966          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: A0A392M174_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392M174_9FABA)

HSP 1 Score: 96.3 bits (238), Expect = 1.700e-20
Identity = 54/136 (39.71%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            +L+  GL   +   TP  P + L  +S     D  TY+ LVG   ++   RP+I++AV KLS+FL SPN  HM AAL++  YL+    +G+ F       +  +SDS+ G CP T +ST+G   F+G SLI  KSK
Sbjct:  606 LLQDTGLLAAKPCPTPMQPQLQLHKSSGSPLSDPTTYRRLVGRLLYLTHSRPEIAYAVSKLSQFLDSPNDAHMLAALHVLKYLKNNPGQGLFFSATSSLQLKGYSDSDWGACPDTRRSTTGFCFFLGTSLISWKSK 741          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: UPI000C1CDE8C (uncharacterized protein LOC111371108 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDE8C)

HSP 1 Score: 92.4 bits (228), Expect = 1.930e-20
Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYA---VGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            +LE  G    +    P  P  HLS +      D   Y+ L+G   ++   RPDI++AV KLS+FL  P L H+ AA +L  YL+ +  +G+ F    D +   +  FSD++ G+C  T KST+G  +F+G S+I  KSK
Sbjct:   46 LLEDTGYLNCKPANAPMDPKTHLSLHEGDLLTDASQYRQLIGRLLYLTISRPDITYAVHKLSQFLSQPRLPHLKAAHHLLRYLKNSPGQGIFFSAKNDGSDLKLQAFSDADWGSCVDTRKSTTGFCIFIGNSMISWKSK 184          
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Match: UPI000B8D0A3F (uncharacterized protein LOC110815833 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D0A3F)

HSP 1 Score: 93.2 bits (230), Expect = 2.110e-20
Identity = 44/121 (36.36%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   46 PCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGFRPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYAVGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK 408
            P  P + +S +      D+ +Y+ L+G   ++   RPDI ++V +LS+FL +P   H+ AAL +  Y++RT  +G+ F  +    + VFSD++ G CP T +S +G  VF+G SL+  KSK
Sbjct:  148 PMDPNIKMSKDDGELLSDITSYRRLIGKLLYLTISRPDICYSVNRLSQFLATPRTSHLQAALRILQYIKRTLGQGLFFPSSSAIQIKVFSDADWGICPDTRRSLTGFCVFLGSSLVSWKSK 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y431_HETAK4.920e-7586.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DC66_HETAK7.030e-7386.76Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y454_HETAK1.900e-7186.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1VJZ2_HETAK1.110e-5564.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TGB8_HETAK8.100e-4455.07Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI00142E4CC02.790e-2136.76uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2Z6PIW5_TRISU3.670e-2139.71Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A392M174_9FABA1.700e-2039.71Retrovirus-related Pol polyprotein from transposon... [more]
UPI000C1CDE8C1.930e-2036.69uncharacterized protein LOC111371108 n=1 Tax=Olea ... [more]
UPI000B8D0A3F2.110e-2036.36uncharacterized protein LOC110815833 n=1 Tax=Caric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1238contigH-akashiwo_Contig1238:65103..65510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3702.AT4G23160.1
PFAMsPkinase,Stress-antifung
Model size408
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0042742,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:0071944,GO:0098542,GO:0140096,GO:1901564
Exons1
Evalue8.68e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37HHV@33090|Viridiplantae,3GXUG@35493|Streptophyta
Descriptionreceptor-like protein kinase
Cds size408
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387128.762534-CDS-H-akashiwo_Contig1238:65102..655101681387128.762534-CDS-H-akashiwo_Contig1238:65102..65510Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1238 65103..65510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1238.1.1prot_H-akashiwo_Contig1238.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1238 65103..65510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1238.1.1

>prot_H-akashiwo_Contig1238.1.1 ID=prot_H-akashiwo_Contig1238.1.1|Name=mRNA_H-akashiwo_Contig1238.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=136bp
VLEAYGLGEVRSKYTPCAPGVHLSSNSSGRQVDVDTYQSLVGASQFIWGF
RPDISFAVGKLSKFLVSPNLGHMDAALYLAGYLRRTASKGMVFGGARDYA
VGVFSDSNHGNCPGTGKSTSGLAVFVGGSLIVHKSK
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mRNA from alignment at H-akashiwo_Contig1238:65103..65510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1238.1.1 ID=mRNA_H-akashiwo_Contig1238.1.1|Name=mRNA_H-akashiwo_Contig1238.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig1238:65103..65510- (Heterosigma akashiwo CCMP452)
GTCCTGGAGGCTTATGGCCTGGGTGAGGTTCGCTCCAAGTACACTCCGTG CGCTCCGGGCGTGCATCTCTCCTCCAACTCCTCGGGAAGGCAGGTGGACG TTGATACCTACCAGTCTTTGGTTGGGGCTTCCCAGTTCATTTGGGGGTTT AGGCCTGACATCAGCTTTGCGGTTGGCAAGTTGTCCAAGTTCCTCGTGTC TCCGAACCTTGGCCATATGGATGCTGCCCTGTACCTTGCTGGTTATCTGC GGAGGACTGCCTCCAAAGGCATGGTGTTTGGCGGCGCCCGGGACTACGCC GTCGGGGTTTTCAGTGACAGTAATCATGGCAACTGCCCCGGCACTGGCAA GTCTACCTCTGGTCTGGCTGTGTTTGTTGGGGGCTCTCTCATCGTCCACA AATCCAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1238:65103..65510-

>mRNA_H-akashiwo_Contig1238.1.1 ID=mRNA_H-akashiwo_Contig1238.1.1|Name=mRNA_H-akashiwo_Contig1238.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig1238:65103..65510- (Heterosigma akashiwo CCMP452)
GTCCTGGAGGCTTATGGCCTGGGTGAGGTTCGCTCCAAGTACACTCCGTG
CGCTCCGGGCGTGCATCTCTCCTCCAACTCCTCGGGAAGGCAGGTGGACG
TTGATACCTACCAGTCTTTGGTTGGGGCTTCCCAGTTCATTTGGGGGTTT
AGGCCTGACATCAGCTTTGCGGTTGGCAAGTTGTCCAAGTTCCTCGTGTC
TCCGAACCTTGGCCATATGGATGCTGCCCTGTACCTTGCTGGTTATCTGC
GGAGGACTGCCTCCAAAGGCATGGTGTTTGGCGGCGCCCGGGACTACGCC
GTCGGGGTTTTCAGTGACAGTAATCATGGCAACTGCCCCGGCACTGGCAA
GTCTACCTCTGGTCTGGCTGTGTTTGTTGGGGGCTCTCTCATCGTCCACA
AATCCAAG
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