mRNA_H-akashiwo_Contig1237.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1237.9.1
Unique NamemRNA_H-akashiwo_Contig1237.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1237.9.1 vs. uniprot
Match: A0A7S3YAK0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAK0_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 4.720e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:   93 MRTPEKTPVRYEEAEFYESSTESEPEIEEGYAEDFGYNQTR 215
            MRTPEKTPVRYEEAEFYESSTESEPEIEEGYAEDFGYNQTR
Sbjct:    1 MRTPEKTPVRYEEAEFYESSTESEPEIEEGYAEDFGYNQTR 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1237.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YAK0_HETAK4.720e-19100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1237contigH-akashiwo_Contig1237:277658..278015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size218
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387128.3740087-UTR-H-akashiwo_Contig1237:277657..2777491681387128.3740087-UTR-H-akashiwo_Contig1237:277657..277749Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1237 277658..277749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387128.3846421-CDS-H-akashiwo_Contig1237:277749..2777781681387128.3846421-CDS-H-akashiwo_Contig1237:277749..277778Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1237 277750..277778 +
1681387128.3993282-CDS-H-akashiwo_Contig1237:277918..2780151681387128.3993282-CDS-H-akashiwo_Contig1237:277918..278015Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1237 277919..278015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1237.9.1prot_H-akashiwo_Contig1237.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1237 277750..278015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1237.9.1

>prot_H-akashiwo_Contig1237.9.1 ID=prot_H-akashiwo_Contig1237.9.1|Name=mRNA_H-akashiwo_Contig1237.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=42bp
MRTPEKTPVRYEEAEFYESSTESEPEIEEGYAEDFGYNQTR*
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mRNA from alignment at H-akashiwo_Contig1237:277658..278015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1237.9.1 ID=mRNA_H-akashiwo_Contig1237.9.1|Name=mRNA_H-akashiwo_Contig1237.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=358bp|location=Sequence derived from alignment at H-akashiwo_Contig1237:277658..278015+ (Heterosigma akashiwo CCMP452)
AAATTGGGAATTGCAGAATTGGAATTGGGACCGGGATAAGATTGGAGTTC
GGGAAAAGAAGGCGTTCCCCGAACTTGTACATATAATCATCAATGAGGAC
CCCTGAGAAAACACCAGTTAGGTGGGCTGGATTATTTTTATCTTCCATTT
GCCTTTAATATGTTTTTAACCTATTAACCTAATGAAATATGATTTTCGGA
TATTTAGCTTCTTTTTTGGTTAAGCCTGCATCCTTACATGACGTGATACA
AATTTCTTCAGGTACGAAGAAGCGGAGTTTTATGAGTCTTCAACTGAAAG
TGAGCCTGAAATAGAGGAGGGTTATGCAGAGGACTTCGGCTACAATCAGA
CAAGGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1237:277658..278015+

>mRNA_H-akashiwo_Contig1237.9.1 ID=mRNA_H-akashiwo_Contig1237.9.1|Name=mRNA_H-akashiwo_Contig1237.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=126bp|location=Sequence derived from alignment at H-akashiwo_Contig1237:277658..278015+ (Heterosigma akashiwo CCMP452)
ATGAGGACCCCTGAGAAAACACCAGTTAGGTACGAAGAAGCGGAGTTTTA
TGAGTCTTCAACTGAAAGTGAGCCTGAAATAGAGGAGGGTTATGCAGAGG
ACTTCGGCTACAATCAGACAAGGTAG
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