mRNA_H-akashiwo_Contig1237.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1237.5.1
Unique NamemRNA_H-akashiwo_Contig1237.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: A0A7S3Y994_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y994_HETAK)

HSP 1 Score: 229 bits (585), Expect = 1.380e-75
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 EHFHRYSHAVLKFLLNMNQKSSGEQSFFNMSETPREVSFVVEEHMKKALKALELAKEPISFTENMWIALQVSEGAAGFQGTAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAELARA 357
            EHFHRYSHAVLKFLLNMNQKSSGEQSFFNMSETPREVSFVVEEHMKKALKALELAKEPISFTENMWIALQVSEGAAGFQGTAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAELARA
Sbjct:   30 EHFHRYSHAVLKFLLNMNQKSSGEQSFFNMSETPREVSFVVEEHMKKALKALELAKEPISFTENMWIALQVSEGAAGFQGTAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAELARA 148
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BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: A0A832TRL9_9EURY (ACT domain-containing protein n=1 Tax=Methanosarcina sp. TaxID=2213 RepID=A0A832TRL9_9EURY)

HSP 1 Score: 63.2 bits (152), Expect = 2.890e-10
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   70 EQSFFNMSETPREVSFVVEEHMKKALKALELAKEPISFTENMWIALQVSEGAAGFQGTAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAELARA 357
            E +FF+++ TP E+S V +E       ++ L       TE  W  L+V EG   F  T ++  +SS+LA+N +SIF VST+  DY+LV E +L RA
Sbjct:   32 ESNFFSITRTPEELSIVCQE------SSIPLNIPAGILTERDWSCLKV-EGPLDFGLTGILAGISSILAENGVSIFAVSTYDTDYILVRETDLVRA 120
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BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: A0A6I8PBT5_ORNAN (Cytosolic arginine sensor for mTORC1 subunit 2 n=2 Tax=Monotremata TaxID=9255 RepID=A0A6I8PBT5_ORNAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.510e-9
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:   10 HRYSHAVLKFLLNMNQKSSGEQSFFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQV-SEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            H ++H +LK        +     FF+++ETP + + +V+E        LEL A E +S  E  W+AL V S G  GF G      T + + V + LAD NIS+F +ST+  D++LV E EL
Sbjct:   21 HLFTHGLLKLAF---LPARTRCKFFSLTETPEDYTVIVDEE-----GFLELPASEHLSVAEATWLALNVVSSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVREREL 133
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BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: UPI0006794C43 (cytosolic arginine sensor for mTORC1 subunit 2 n=1 Tax=Falco peregrinus TaxID=8954 RepID=UPI0006794C43)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-8
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAELAR 354
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV   E  R
Sbjct:   41 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRGHERTR 134
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BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: A0A091S508_NESNO (GATS-like 1 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A091S508_NESNO)

HSP 1 Score: 61.2 bits (147), Expect = 1.060e-8
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV E +L
Sbjct:    5 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDL 96
[Close]
BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: A0A1D5PUZ4_CHICK (Uncharacterized protein n=54 Tax=Archelosauria TaxID=1329799 RepID=A0A1D5PUZ4_CHICK)

HSP 1 Score: 61.2 bits (147), Expect = 1.370e-8
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV E +L
Sbjct:   41 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDL 132
[Close]
BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: UPI0004F4FB73 (GATS-like protein 2 n=2 Tax=Neognathae TaxID=8825 RepID=UPI0004F4FB73)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-8
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV E +L
Sbjct:   45 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDL 136
[Close]
BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: UPI00071D7199 (GATS-like protein 2 n=1 Tax=Calidris pugnax TaxID=198806 RepID=UPI00071D7199)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-8
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV E +L
Sbjct:   54 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDL 145
[Close]
BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: UPI0005218563 (GATS-like protein 2 n=1 Tax=Charadrius vociferus TaxID=50402 RepID=UPI0005218563)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-8
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV E +L
Sbjct:   55 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDL 146
[Close]
BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Match: A0A8C9EXJ7_PAVCR (Cytosolic arginine sensor for mTORC1 subunit 2 n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9EXJ7_PAVCR)

HSP 1 Score: 61.2 bits (147), Expect = 1.450e-8
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   79 FFNMSETPREVSFVVEEHMKKALKALEL-AKEPISFTENMWIALQVSEGAAGFQG------TAVVQKVSSVLADNNISIFFVSTFSEDYVLVGEAEL 348
            FF+++ETP + + +V+E        LEL + E +S  +  W+AL V  G  GF G      T + + V + LAD NIS+F +ST+  D++LV E +L
Sbjct:   24 FFSLTETPEDYTIIVDEE-----GFLELPSSEHLSVADATWLALNVVSGGGGFSGSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDL 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1237.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y994_HETAK1.380e-75100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A832TRL9_9EURY2.890e-1039.58ACT domain-containing protein n=1 Tax=Methanosarci... [more]
A0A6I8PBT5_ORNAN1.510e-936.36Cytosolic arginine sensor for mTORC1 subunit 2 n=2... [more]
UPI0006794C431.040e-836.36cytosolic arginine sensor for mTORC1 subunit 2 n=1... [more]
A0A091S508_NESNO1.060e-837.11GATS-like 1 (Fragment) n=2 Tax=Neognathae TaxID=88... [more]
A0A1D5PUZ4_CHICK1.370e-837.11Uncharacterized protein n=54 Tax=Archelosauria Tax... [more]
UPI0004F4FB731.390e-837.11GATS-like protein 2 n=2 Tax=Neognathae TaxID=8825 ... [more]
UPI00071D71991.420e-837.11GATS-like protein 2 n=1 Tax=Calidris pugnax TaxID=... [more]
UPI00052185631.420e-837.11GATS-like protein 2 n=1 Tax=Charadrius vociferus T... [more]
A0A8C9EXJ7_PAVCR1.450e-837.11Cytosolic arginine sensor for mTORC1 subunit 2 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1237contigH-akashiwo_Contig1237:243117..244269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42254.XP_004621867.1
Preferred nameGATSL2
PFAMsACT_7
Model size360
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0023051,GO:0023057,GO:0032006,GO:0032007,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:1902531,GO:1902532,GO:1903432,GO:1904262
Exons4
Evalue2.44e-09
EggNOG OGs2BYR3@1|root,2QV83@2759|Eukaryota,38FGW@33154|Opisthokonta,3BD0Q@33208|Metazoa,3CW5M@33213|Bilateria,48449@7711|Chordata,496YK@7742|Vertebrata,3JBF5@40674|Mammalia
DescriptionGATS-like protein 2
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387128.5792863-CDS-H-akashiwo_Contig1237:243116..2431811681387128.5792863-CDS-H-akashiwo_Contig1237:243116..243181Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1237 243117..243181 +
1681387128.5912175-CDS-H-akashiwo_Contig1237:243336..2434851681387128.5912175-CDS-H-akashiwo_Contig1237:243336..243485Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1237 243337..243485 +
1681387128.6004272-CDS-H-akashiwo_Contig1237:243732..2438431681387128.6004272-CDS-H-akashiwo_Contig1237:243732..243843Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1237 243733..243843 +
1681387128.6084473-CDS-H-akashiwo_Contig1237:244236..2442681681387128.6084473-CDS-H-akashiwo_Contig1237:244236..244268Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1237 244237..244268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1237.5.1prot_H-akashiwo_Contig1237.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1237 243117..244268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1237.5.1

>prot_H-akashiwo_Contig1237.5.1 ID=prot_H-akashiwo_Contig1237.5.1|Name=mRNA_H-akashiwo_Contig1237.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=119bp
EHFHRYSHAVLKFLLNMNQKSSGEQSFFNMSETPREVSFVVEEHMKKALK
ALELAKEPISFTENMWIALQVSEGAAGFQGTAVVQKVSSVLADNNISIFF
VSTFSEDYVLVGEAELARA
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mRNA from alignment at H-akashiwo_Contig1237:243117..244269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1237.5.1 ID=mRNA_H-akashiwo_Contig1237.5.1|Name=mRNA_H-akashiwo_Contig1237.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1153bp|location=Sequence derived from alignment at H-akashiwo_Contig1237:243117..244269+ (Heterosigma akashiwo CCMP452)
GAACACTTCCATCGGTATTCGCATGCAGTGCTTAAATTTCTTCTAAATAT
GAATCAAAAGTCAAGGTACGAGGCATTCTTCTTCGAAGCAAATCAGCCAA
ACCCCGCTGATACTAGAAGGTTACTTTGCCTCAAACTTGATTCTTACTAC
ATTTTTTTACTCTTTCTTGTTACTATTTTGTTATTATGTTCGTGCCGTGG
TTGGGGCGGGGGATGATCAGCGGCGAGCAAAGCTTCTTTAATATGTCTGA
AACACCGCGCGAGGTCAGTTTTGTGGTTGAGGAACACATGAAGAAGGCCC
TGAAGGCTCTGGAGTTAGCCAAAGAGCCCATCAGCTTTACAGAAAACATG
TGGATTGCTCTTCAAGTCTGTGAGTTGCCTTTGGATAGTTCAGCGTCTGT
CACCTGTACCATCATCTGATAAAATAATGTTTCGTTTTTTTTTCTTCTTT
TTTTCAAGGAATGTATAAAACAGAGTGAAATAATCAACAGTTGAAACCTA
TATGCAAAACATACCACTACCAACAGAGGTAGAGGGGGGGCAATAGGTAT
TTATGGATGCCACATTGTTCAATTCTTTCCCATAAAATATGATTATGTGT
GTCCTCTCTTGATCAGCTGAAGGAGCTGCTGGATTCCAAGGGACAGCAGT
TGTTCAGAAAGTGTCATCTGTTCTTGCTGACAACAACATCAGTATCTTCT
TCGTATCAACATTCTCAGAGGACTATGGTAAGTTTAACCTTCATGTAGAT
CCGGGCCTAGCACCGCAAGTGGTGCCATGTTGCCTCTTTTTTTCTACTCT
ACTGTTCAGTTAGTCATTATTATGGCTAAATATATATTTCTCATGTGTTC
TTCCTCTCTGTTTGTTCCATTGATGATGTTTATGTTAACTGGTACAAATA
CATTTGACCCGGGTAAGGACAACTCTGATTATAGTTGGTTGTTACTGCTG
CTTCTGATTGGTACTGCTGCTTCTGATTGCAAAACTGTGTAGTAAGGCTG
AATGTTTCTCGAACAAAAGCAGCTGTTGCCGTACCGCCCAGTCCACCACC
AGACTGATGCCGCCTCCCGCCGCTCCCCTCCCGCCCTCCCCCTGCCCCTC
CGCTCGGCGCGGCCCCCCAGTGCTGGTGGGGGAGGCCGAGCTCGCCCGCG
CGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1237:243117..244269+

>mRNA_H-akashiwo_Contig1237.5.1 ID=mRNA_H-akashiwo_Contig1237.5.1|Name=mRNA_H-akashiwo_Contig1237.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig1237:243117..244269+ (Heterosigma akashiwo CCMP452)
GAACACTTCCATCGGTATTCGCATGCAGTGCTTAAATTTCTTCTAAATAT
GAATCAAAAGTCAAGCGGCGAGCAAAGCTTCTTTAATATGTCTGAAACAC
CGCGCGAGGTCAGTTTTGTGGTTGAGGAACACATGAAGAAGGCCCTGAAG
GCTCTGGAGTTAGCCAAAGAGCCCATCAGCTTTACAGAAAACATGTGGAT
TGCTCTTCAAGTCTCTGAAGGAGCTGCTGGATTCCAAGGGACAGCAGTTG
TTCAGAAAGTGTCATCTGTTCTTGCTGACAACAACATCAGTATCTTCTTC
GTATCAACATTCTCAGAGGACTATGTGCTGGTGGGGGAGGCCGAGCTCGC
CCGCGCG
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