mRNA_H-akashiwo_Contig1232.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1232.1.1
Unique NamemRNA_H-akashiwo_Contig1232.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1232.1.1 vs. uniprot
Match: A0A7S4D6W2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W2_HETAK)

HSP 1 Score: 129 bits (323), Expect = 3.650e-35
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = -1 
Query:    1 AKQFAQHSLA*QATKEARGQALLPACLGLLEDMVVFLLGGMCSAHLDAARSNNGEGPKLVLGVQDALERAVVMMVAEFAAEATAY 255
            A Q AQHSLA QA KE RGQALLP CLGLLED+VVFLLGGMCSAHLDAARSNNGEGP+LVLGVQDALE AV ++ AE  AEATAY
Sbjct:   25 AMQTAQHSLAEQAAKEVRGQALLPVCLGLLEDLVVFLLGGMCSAHLDAARSNNGEGPELVLGVQDALEWAV-LVAAELVAEATAY 108
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BLAST of mRNA_H-akashiwo_Contig1232.1.1 vs. uniprot
Match: A0A7S3Y6J3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J3_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 4.740e-9
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  429 ETDAQQPCWPARRPRRPRAVWLVRPD 506
            ETDAQQPCWPARRPRRPRAVWLVRPD
Sbjct:   83 ETDAQQPCWPARRPRRPRAVWLVRPD 108
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BLAST of mRNA_H-akashiwo_Contig1232.1.1 vs. uniprot
Match: A0A7S3XM63_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM63_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 3.040e-8
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = -1 
Query:   88 LMAAKQFAQHSLA*QATKEA----RGQALLPACLGLLEDMVVFLLGGMCSAHLDAARSNNGEG 264
            L AA++ AQH +A +A KEA    RG+ALLP CLG LED VVFLLGG   A+LDAA    GEG
Sbjct:  143 LTAAEKDAQHPVAGRAAKEAARLARGRALLPVCLGALEDAVVFLLGGARFAYLDAA---GGEG 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4D6W2_HETAK3.650e-3582.35Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6J3_HETAK4.740e-9100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XM63_HETAK3.040e-860.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1232contigH-akashiwo_Contig1232:234330..234837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size508
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387127.5835967-CDS-H-akashiwo_Contig1232:234329..2348361681387127.5835967-CDS-H-akashiwo_Contig1232:234329..234836Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1232 234330..234836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1232.1.1prot_H-akashiwo_Contig1232.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1232 234330..234836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1232.1.1

>prot_H-akashiwo_Contig1232.1.1 ID=prot_H-akashiwo_Contig1232.1.1|Name=mRNA_H-akashiwo_Contig1232.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=169bp
VRGGLSRKFCHHHHNCPLQRILHTQHQLWALPVVAAGRVQVGRAHATQQE
DHHVLQQTQTRRQQCLATRLLGRLLGQGMLRKLLCRHQHHHAHQLRGQQL
AGRHRKGCLRYTAAQPPALPVVARAFAFAGAGCCPLAGTRAAESGRTSHT
ARGLLGRLAGQQGCCASVS
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mRNA from alignment at H-akashiwo_Contig1232:234330..234837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1232.1.1 ID=mRNA_H-akashiwo_Contig1232.1.1|Name=mRNA_H-akashiwo_Contig1232.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=508bp|location=Sequence derived from alignment at H-akashiwo_Contig1232:234330..234837+ (Heterosigma akashiwo CCMP452)
GTACGCGGTGGCCTCAGCCGCAAATTCTGCCACCATCATCACAACTGCCC
GCTCCAGCGCATCCTGCACACCCAGCACCAGCTTTGGGCCCTCCCCGTTG
TTGCTGCGGGCCGCGTCCAAGTGGGCAGAGCACATGCCACCCAGCAAGAA
GACCACCATGTCCTCCAGCAAACCCAGACACGCAGGCAGCAGTGCTTGGC
CACGCGCCTCCTTGGTCGCCTGCTAGGCCAGGGAATGCTGCGCAAACTGC
TTTGCCGCCATCAGCACCACCACGCTCATCAGCTCCGTGGACAGCAGCTT
GCAGGACGGCACCGCAAAGGGTGCCTCCGCTACACTGCCGCCCAGCCCCC
CGCCTTACCTGTGGTTGCCAGAGCCTTCGCCTTTGCGGGCGCAGGATGTT
GCCCCCTGGCGGGCACACGGGCAGCAGAGTCCGGCCGCACCAGCCACACG
GCTCGCGGCCTCCTTGGCCGCCTGGCCGGCCAGCAGGGTTGTTGCGCGTC
CGTCTCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1232:234330..234837+

>mRNA_H-akashiwo_Contig1232.1.1 ID=mRNA_H-akashiwo_Contig1232.1.1|Name=mRNA_H-akashiwo_Contig1232.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=507bp|location=Sequence derived from alignment at H-akashiwo_Contig1232:234330..234837+ (Heterosigma akashiwo CCMP452)
GTACGCGGTGGCCTCAGCCGCAAATTCTGCCACCATCATCACAACTGCCC
GCTCCAGCGCATCCTGCACACCCAGCACCAGCTTTGGGCCCTCCCCGTTG
TTGCTGCGGGCCGCGTCCAAGTGGGCAGAGCACATGCCACCCAGCAAGAA
GACCACCATGTCCTCCAGCAAACCCAGACACGCAGGCAGCAGTGCTTGGC
CACGCGCCTCCTTGGTCGCCTGCTAGGCCAGGGAATGCTGCGCAAACTGC
TTTGCCGCCATCAGCACCACCACGCTCATCAGCTCCGTGGACAGCAGCTT
GCAGGACGGCACCGCAAAGGGTGCCTCCGCTACACTGCCGCCCAGCCCCC
CGCCTTACCTGTGGTTGCCAGAGCCTTCGCCTTTGCGGGCGCAGGATGTT
GCCCCCTGGCGGGCACACGGGCAGCAGAGTCCGGCCGCACCAGCCACACG
GCTCGCGGCCTCCTTGGCCGCCTGGCCGGCCAGCAGGGTTGTTGCGCGTC
CGTCTCG
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