mRNA_H-akashiwo_Contig123.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig123.21.1
Unique NamemRNA_H-akashiwo_Contig123.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig123.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig123contigH-akashiwo_Contig123:1311790..1312659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size358
Hectar predicted targeting categoryother localisation
Exons4
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387127.0910153-CDS-H-akashiwo_Contig123:1311789..13118401681387127.0910153-CDS-H-akashiwo_Contig123:1311789..1311840Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1311790..1311840 -
1681387127.1026201-CDS-H-akashiwo_Contig123:1312093..13121711681387127.1026201-CDS-H-akashiwo_Contig123:1312093..1312171Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1312094..1312171 -
1681387127.1124609-CDS-H-akashiwo_Contig123:1312336..13124091681387127.1124609-CDS-H-akashiwo_Contig123:1312336..1312409Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1312337..1312409 -
1681387127.1226711-CDS-H-akashiwo_Contig123:1312503..13126551681387127.1226711-CDS-H-akashiwo_Contig123:1312503..1312655Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1312504..1312655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387127.1394575-UTR-H-akashiwo_Contig123:1312655..13126591681387127.1394575-UTR-H-akashiwo_Contig123:1312655..1312659Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig123 1312656..1312659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig123.21.1prot_H-akashiwo_Contig123.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig123 1311790..1312655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig123.21.1

>prot_H-akashiwo_Contig123.21.1 ID=prot_H-akashiwo_Contig123.21.1|Name=mRNA_H-akashiwo_Contig123.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
MVLTEEQLYEITKRVEQTLRDANVYSQVRESLNSLTGDEQLEGKDFERIA
RAIEDELGFQNDESVDLDPTFLFLQVTLVGGRAFTAQLADNEIKSHRYTF
QAHIQFNGQRVWSNQVPA
back to top

mRNA from alignment at H-akashiwo_Contig123:1311790..1312659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig123.21.1 ID=mRNA_H-akashiwo_Contig123.21.1|Name=mRNA_H-akashiwo_Contig123.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=870bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1311790..1312659- (Heterosigma akashiwo CCMP452)
AGAGATGGTGCTAACGGAAGAACAGTTGTATGAAATCACTAAAAGAGTTG
AGCAAACACTACGAGACGCAAATGTTTATTCGCAGGTCCGAGAATCCTTA
AACTCACTAACTGGAGATGAACAGCTTGAAGGAAAGGATTTCGAAAGAAT
CGCCAGGTAACGGAGGTGTCAACATGTTTCTTAGGATGATTTCGATGAAT
AGCTGAAGTAAAGTTGATTTTAGTAGTATTAAATTCGATTCGTGACTCAG
GGCGATTGAAGATGAGCTAGGCTTTCAAAACGATGAAAGTGTTGATCTGG
ATCCAACATTCTTGTTTCTTCAGGTTCGGCCATTTTTCACTGTTCTGTAG
TATATGTCATGCACTATAGTAAGAGATAAGTATATGAGTCGTGCACCAGC
AAGATGAGCATGCCTCATTGTAAAATTTAACTTGTGATTCTACGCACAAA
TGGTTTTGCACACTAAATTCCAAAAATTGGATCCGTAGGTGACTCTGGTT
GGGGGGCGAGCATTCACAGCTCAGCTCGCAGACAATGAAATCAAATCCCA
CCGGTACACGTTTCAGGTCAGCCCAATATATGGTATCTCTCATCTCTCTC
TTTTCTATTTGTACTGAGCTCGCCGTGCTGGTCATATCGAACCGAGGCCA
ATTACATGTATTTATATATCCCCCTTTTTGCTGTTATATGGTGAATTGAG
GCCAACACACAGAACTAAACCGAAAACAGTTATTTACCCCTTTTACTACA
CTGAACCATGATCATTGTACTCTTTGCCTGATCTGTTCCATAAAATGTTC
TCTTCATTGTCTACATTAGGCTCACATCCAATTCAATGGACAGCGAGTAT
GGTCCAACCAAGTCCCAGCT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig123:1311790..1312659-

>mRNA_H-akashiwo_Contig123.21.1 ID=mRNA_H-akashiwo_Contig123.21.1|Name=mRNA_H-akashiwo_Contig123.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1311790..1312659- (Heterosigma akashiwo CCMP452)
ATGGTGCTAACGGAAGAACAGTTGTATGAAATCACTAAAAGAGTTGAGCA
AACACTACGAGACGCAAATGTTTATTCGCAGGTCCGAGAATCCTTAAACT
CACTAACTGGAGATGAACAGCTTGAAGGAAAGGATTTCGAAAGAATCGCC
AGGGCGATTGAAGATGAGCTAGGCTTTCAAAACGATGAAAGTGTTGATCT
GGATCCAACATTCTTGTTTCTTCAGGTGACTCTGGTTGGGGGGCGAGCAT
TCACAGCTCAGCTCGCAGACAATGAAATCAAATCCCACCGGTACACGTTT
CAGGCTCACATCCAATTCAATGGACAGCGAGTATGGTCCAACCAAGTCCC
AGCT
back to top