mRNA_H-akashiwo_Contig1227.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1227.1.1
Unique NamemRNA_H-akashiwo_Contig1227.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1227.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1227contigH-akashiwo_Contig1227:69925..73321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSH9
Preferred nameFMO1
PFAMsFMO-like,NAD_binding_8
Model size189
Max annot lvl2759|Eukaryota
KEGG rclassRC02233
KEGG koko:K00485
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,map00982,map01120
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0004499,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006457,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016491,GO:0016705,GO:0016709,GO:0031984,GO:0034975,GO:0036094,GO:0042175,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0055114,GO:0097159,GO:0098827,GO:1901265,GO:1901363
Exons2
Evalue6.28e-05
EggNOG OGsCOG2072@1|root,KOG1399@2759|Eukaryota
Ec32 ortholog descriptionsimilar to flavin-containing monooxygenase family protein
Ec32 orthologEc-11_003800.2
EC1.14.13.8
DescriptionN,N-dimethylaniline monooxygenase activity
Cds size162
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.163475-UTR-H-akashiwo_Contig1227:69924..699271681387126.163475-UTR-H-akashiwo_Contig1227:69924..69927Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1227 69925..69927 +
1681387126.1950197-UTR-H-akashiwo_Contig1227:73297..733211681387126.1950197-UTR-H-akashiwo_Contig1227:73297..73321Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1227 73298..73321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.1762369-CDS-H-akashiwo_Contig1227:69927..699661681387126.1762369-CDS-H-akashiwo_Contig1227:69927..69966Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1227 69928..69966 +
1681387126.1868157-CDS-H-akashiwo_Contig1227:73174..732971681387126.1868157-CDS-H-akashiwo_Contig1227:73174..73297Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1227 73175..73297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1227.1.1prot_H-akashiwo_Contig1227.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1227 69928..73297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1227.1.1

>prot_H-akashiwo_Contig1227.1.1 ID=prot_H-akashiwo_Contig1227.1.1|Name=mRNA_H-akashiwo_Contig1227.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
MKNLGDILAVNEQIYNDVANHRPKFPGGSDTYRKMNYHVNRGTCSWIVSH
DSN*
back to top

mRNA from alignment at H-akashiwo_Contig1227:69925..73321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1227.1.1 ID=mRNA_H-akashiwo_Contig1227.1.1|Name=mRNA_H-akashiwo_Contig1227.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3397bp|location=Sequence derived from alignment at H-akashiwo_Contig1227:69925..73321+ (Heterosigma akashiwo CCMP452)
GATATGAAGAATCTTGGTGACATTCTGGCTGTAAATGAACAGGTAGATGA
ATTCTCTTCTTGGTCATAACAATATATGAATTTGTTATGAAAGCCTATGG
CATTGGCCTGGAAGTATGTGTGTGTTTATTTATTTGATAATGAAAATATA
AAAGTGCCCTCATAAATCTGTCTGTCATTGATTATAAATAAAAATGAGAT
GTATTCAATCTACACTATGATTGAAATGAAAGTGATCACGGGTGGTACGG
AACAATTAATTGATCTTCTAGCAAATGATACGCCTCTCCAGCTCCCCTAT
GATATTAGTGATGATGGTAGACTTAGTTTACAGTTATTTTGCCGTTCAAA
TCGTTTTCCGGGAAAACCAGCCAAAGTTAGCCAGCCCCTAGCATCTGTAA
CAAAATGAACATAATGGTTGAAAGTTTCAGTCAGTTGAAGTAGAAAGCTC
TGATAATAGACAATATAAAGCTCTACTGAAAGAAGCTAGGGTAGATTACC
CTTTTCGGCTGTTTTCCCTGGAAGCAATTTGAAGGTCTAGACTCTATGTT
GCGCAATTTTCGAGTTGATCAATCATACTGTTCAAGTGCCATCAGTATTG
GAAGTTCATAGCGTCCTCGTCATTGTTGAGATGGCAGTTCAGAAGTCTCA
GCGTCTCTGCAACCCATCAATCAGCCCTCTTCTATGATGAAGGATCTCAC
AACCTCAATGGTCATCCCTCTGTTACTGCTCGAATGTTTTGATCAACCAT
CAACCTCGCCAGTTCTCATTTACTTCTACTAAATACCTACTGCACATATT
TACAATCTGGACAGATTGGCGTGCCATCACTGATGGTGCAACTTAACCAT
GAGGCAGGAAAGATTTTTTTTTTTAATGATTGGTTATAGAAAAAGCTATA
CTACTCTTGAATCCCACGCCATGACAATGATGCAGCATCTCGGCTACTTC
AAGCCAAGGCTAGCTTTTCTACCCCCTCTAGCCATCGTCAGATTGCCTGT
GCATTTGAGGGAATGATGGAGTCCTGCGACAGTATATTACTTACACCACC
AAGAAGTGATGATTGAAGCTCTCCATTATAGTGATGAGTACTTTGGCTGC
TTCCCTCCTTGTTGTGAGTGATAGTGTAACCGTCAGCTATTGAATTTTGG
CAAATCAGAACTCTCACAGCTACCCAAAAATATGTGTTTCTCAACTGACC
ACGTTGTTTCAGTCCAACCGCCTGCAAGGATGTATTAATTTTTGTGCTCA
AAATTCACTTCTCCAAACTTTTGGATATATGAGTTTACGTGATTGTTTAT
ATTCTCGCTCCTCTCTTCTCTTCGAAGAAAAGAATCATCAGATAAGAAGG
AGAATCAAGCTCTCTTCTCTTCAAGCAAAAGAATCATCAGAAAAAAATGT
GAAGAAGGGAAAAACGAATTATATATATCAATTATATATATCAATAATCC
AAACTGTGAACCAATCATCCATCTCCACCACTCAGGATCATGTATATAAT
TGTTGTTCTTTCTTCGTGTAGCTGTGTGTGCCTGGTTTTTTTGTTGGTGG
TATGTAGGTGTACTTCGTAGCTCATCATCATTGCTCGTCATCGCAGCTGT
CATGATTCCCTTTCCTCTTATTCATCCTTTCCTCGTCTACAGCTATACTG
CATCACAACAACTGGAAGAGGGCGATGAGGCCAAAGGGCAATAGAGCATG
TAGGGTTAAGGGCAGCTGGAACTTCCAAGTTAGTCAGTAGCCAGACTTAG
TCCGACGAAGTGCTCAGATGTCAAGGCAGCCTGCAGATAGACGGTGGTTG
TGTGGCTCAGGATGTGAAGGGGCACACTACTGCAAGTAGAAACGTAGAAG
AAAAAAAGAGAAAAAAAAAAAAAGACACATTTTCATCCAAGCTCAATTTG
AGCCACAGCCAAAAGGGCATTGTTGCTGCTGGAAACTTGGCCAGGCCATC
TTTTGTTTGCGGTATAGGAGCTCAAAAAATATCATTATCTGAACGGAAAT
CGTAGCGGTAGGTACGAGTTCTTTGGGCTGAATCGACAGGATAGATGGCA
GATTAATAAGCTAGCGCACTTTCTTCAAAGCACCGCTTTATCAATGGGAA
GATGAGCTCGCGTGATTTTCAGCAACGACACATGGTTCTACTGTCGTCAG
CTGGCAGCCCCCGCAAGAGGTCAATGGCAAACTGCTGCTATCCAGCCAGC
TCATTCACCTGACTTGAATGTCCTGGACTTGGATTTTGGGGCTCGGCACC
AGCAAGTCCTCATCGATAACAGGTATGCATGGGCAAGATTATTGGTTGGT
AGCAAGAACTACTGGTCGAAAGGTTGACACAGCAAAGTGAGTCATTGCAG
CAATCAAGATGATGAAATCTTCTTCTTTCACTGTGGTGCTGGCCCAGCCG
CAAACGACACGCGCATAAAGTATTACACAACAACAATAGAAAAGGGCCTA
TTTTTTGTTTATTGTTTTCTGGTGATTCTACTTATTTTGGACAAAATCAA
CGAAACAGAGTAGTAGTATGGAAAGAGCAGCGAGCACAAGAACCAGAGAG
TTTTGTTTGTCTTGGGTCTTGTAATGCAACAATGAGTTGCATTTGTAACA
ATATTGCTTACAGGGTCTTGTCATACAATAAGTTACATTTACAACAATAT
TACACTTACCCATACCATTGTAGTATGCATTTTTGGCTTATTTAAAAATC
ATCATGTATGATTACATTTTTTTACCAATGAAAGTTACAAACCAAAAGTT
TCCAGAATACTTTCAAATTAGTGGGGGGGGGAATAAAGACATAATAGAAA
AGAATGAGATGAAGATATTTTATTGATCTTGCTGTTCTGTCAAAGTATGG
CAACGACATTGGGGAGGAGGGTGGGGTTAGAAAGAAAAAATATAAAGGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGGAAGGAATTCTTGTTT
ATGTGTCATCAAATATTAACATTCCTAATGTGTGTGAAAGGTCGCTACTC
ACTACTCTAACAGAGAGTTTGGGCATCCTTCTGGCCAGTAGGGATCAAAA
ATCAACAACCAACAATAAAAGGTGCTGATGGCATTTTCAATAATAGGTAC
ATGTGTCTACGATAATAGTATATTTGTGTGCGATGTTGTTGTTTTTTTTT
TGGTGGGGGGGGGGCTGCATTGATTACTAAATATCAACCCTGAGGCTATT
TTTTGTATGTTTCATCCGTCACTACCTCCATCTTTGCCCAATTACTTCAG
ATTTACAATGATGTTGCAAACCACCGGCCAAAATTTCCTGGGGGTTCTGA
TACATACAGGAAGATGAATTACCATGTGAACAGAGGCACTTGCTCTTGGA
TAGTCAGTCATGATAGCAATTAAACGGAGAATGAAGTTTACAGCAAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1227:69925..73321+

>mRNA_H-akashiwo_Contig1227.1.1 ID=mRNA_H-akashiwo_Contig1227.1.1|Name=mRNA_H-akashiwo_Contig1227.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1227:69925..73321+ (Heterosigma akashiwo CCMP452)
ATGAAGAATCTTGGTGACATTCTGGCTGTAAATGAACAGATTTACAATGA
TGTTGCAAACCACCGGCCAAAATTTCCTGGGGGTTCTGATACATACAGGA
AGATGAATTACCATGTGAACAGAGGCACTTGCTCTTGGATAGTCAGTCAT
GATAGCAATTAA
back to top