mRNA_H-akashiwo_Contig1226.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1226.3.1
Unique NamemRNA_H-akashiwo_Contig1226.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: A0A7S3XKA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKA2_HETAK)

HSP 1 Score: 255 bits (651), Expect = 2.180e-84
Identity = 127/162 (78.40%), Postives = 130/162 (80.25%), Query Frame = 1
Query:   46 LGSPCYFLLCVVFQPWSEVSGKEYAFWFCHRKDEQRRRCLSPGGLPRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLKKK 531
            LG    F     F    +   +   F F   +         PGGLPRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLKKK
Sbjct:   15 LGLLAIFSCVSSFSHGVKSPARNMRFGFAIARMSNEEGVSPPGGLPRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLKKK 176          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: A0A835YL21_9STRA (HopJ type III effector protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL21_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.370e-42
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1
Query:  181 PRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 525
            P  +  F  +L  + D V FE+TM +I++NY++  KPF NG++ NAAG N GSCKVFSFGKLA L E  TL+CFG+HYRDVL+DP G AH NIR+FM  GW G+ F EG+ LT K
Sbjct:    9 PSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 123          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: UPI000248F885 (HopJ type III effector protein n=1 Tax=Aquimarina agarivorans TaxID=980584 RepID=UPI000248F885)

HSP 1 Score: 130 bits (328), Expect = 3.660e-36
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  190 VVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYR-DVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 525
            + DF  KLDS P+DV F ETM ++  NY++TE  FKNG   N A +N GSCK+F+F KL  LS + TL CFG++YR DVL +P G+ HGNIRNFM  GW GI F EG+ LT K
Sbjct:    3 ITDFLNKLDSVPNDVAFSETMQVVEDNYNFTETAFKNGTTYNEASQNSGSCKLFAFAKLNELSNEATLACFGDYYRKDVLENPTGSDHGNIRNFMKFGWKGIHF-EGIALTKK 114          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: UPI001E439297 (HopJ type III effector protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI001E439297)

HSP 1 Score: 129 bits (324), Expect = 1.570e-35
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  196 DFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 525
            DF I+L + PD + F +TM +I  +YD+T   F+NGE++NAA +N GSCK+F+FG L  LSE QTL  FGEHYR V++ P GT H NIRNF+  GWNGI F  G  L LK
Sbjct:    4 DFFIQLSTEPDSISFAQTMAVIDKHYDFTAVAFENGEVTNAADQNNGSCKIFAFGLLHQLSEPQTLQLFGEHYRQVMATPSGTDHQNIRNFLITGWNGIRF-SGNALQLK 112          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: UPI001F36D483 (HopJ type III effector protein n=1 Tax=Sideroxydans sp. MIZ01 TaxID=2764705 RepID=UPI001F36D483)

HSP 1 Score: 129 bits (324), Expect = 1.570e-35
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  187 QVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRD-VLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLKK 528
            ++  F  +L ++P++V F+ETM II ++YD+    F+NG+L+NAAG+N GSCK+FSF +L  L +QQTL+CFG++YRD VL  PDG+ H NIRNF+  GW GIEFG G  LT KK
Sbjct:    2 ELESFLQRLSTAPENVTFDETMAIIDAHYDFIPTAFRNGQLNNAAGQNNGSCKLFSFARLHGLPQQQTLHCFGKYYRDDVLKHPDGSDHQNIRNFIKTGWAGIEFG-GDALTPKK 115          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: UPI00188129C8 (HopJ type III effector protein n=1 Tax=Cellvibrio polysaccharolyticus TaxID=2082724 RepID=UPI00188129C8)

HSP 1 Score: 128 bits (322), Expect = 3.150e-35
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  199 FKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYR-DVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLKK 528
            F  KL ++P+ V F  T+  I SN+DY    F+NGE+SNAAG+N GSCKVFSF K+  LSEQ+TL CFG+ YR DVL +P G+ HGNIRNF+  GW+GIEF E   LT K+
Sbjct:    6 FLTKLRTAPETVSFNHTIDTIQSNFDYIPTAFRNGEISNAAGQNEGSCKVFSFAKIHALSEQETLYCFGDFYREDVLKNPQGSDHGNIRNFIRHGWSGIEF-ESAALTPKQ 115          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: UPI0016648CA5 (HopJ type III effector protein n=1 Tax=Shewanella inventionis TaxID=1738770 RepID=UPI0016648CA5)

HSP 1 Score: 127 bits (318), Expect = 1.430e-34
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  187 QVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLKKK 531
            QV  F   LD    ++ FEETM +I +NYD+T   FKNG+  N AG+N GSCKVF+FG++  L++QQTL  FGEHYRDVL+ P G+ H NIR FM  GW G+ F + L L LK K
Sbjct:    5 QVSRFIATLDERAHELRFEETMALIDANYDFTPSAFKNGDQLNDAGQNSGSCKVFAFGQIQQLTQQQTLTLFGEHYRDVLATPQGSDHQNIRQFMQHGWAGVLFSQ-LALLLKNK 118          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: A0A2D5GEC6_9GAMM (Type III effector n=1 Tax=Oceanospirillum sp. TaxID=2021254 RepID=A0A2D5GEC6_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 2.260e-34
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  238 FEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 525
            FE+T+ +IS NYDYT   F+NGE++N AG+N GSCK+F+F +L  L+EQQTL CFG  Y+DVL+ P+GT HGNIRNFM+ GW+GI F E   LT +
Sbjct:   18 FEDTIAVISENYDYTPTAFQNGEVNNEAGQNEGSCKIFAFAQLNNLNEQQTLACFGRFYQDVLATPEGTDHGNIRNFMSSGWSGIRF-EATALTAR 112          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: A0A1U9L9Q6_9FLAO (Type III effector n=2 Tax=unclassified Polaribacter TaxID=196858 RepID=A0A1U9L9Q6_9FLAO)

HSP 1 Score: 126 bits (316), Expect = 2.330e-34
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  190 VVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 525
            + +FK KL  +P  + F +TM +I  NY++T   FKNG + N AGEN GSCK+F+F KL  L++++TL CFGEHY++VL D +GT+H NIRNFM  G++G+ F E   LTLK
Sbjct:    3 IQEFKTKLKLNPSAILFADTMQVIEDNYNFTPTAFKNGTIENKAGENAGSCKLFAFAKLQKLTKEETLFCFGEHYKNVLEDANGTSHQNIRNFMNTGFDGLTF-ESEALTLK 113          
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Match: A0A1G3IS42_9PROT (Type III effector n=1 Tax=Sideroxydans sp. RIFOXYB12_FULL_59_6 TaxID=1802155 RepID=A0A1G3IS42_9PROT)

HSP 1 Score: 125 bits (314), Expect = 4.970e-34
Identity = 64/113 (56.64%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  190 VVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYR-DVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 525
            +  F  +L  SPD V F+ETM +I   YD+T   F NG   N AG+N GSCK+FSF KL  LS+QQTL CFG++YR DVL +PDGT H NIRNFM  GW GI F EG  L  K
Sbjct:    3 LTTFLQRLHDSPDSVCFKETMALIDELYDFTPTAFINGATRNEAGQNNGSCKLFSFAKLHGLSQQQTLTCFGDYYRKDVLGNPDGTDHANIRNFMKSGWEGISF-EGSALKPK 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1226.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XKA2_HETAK2.180e-8478.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YL21_9STRA8.370e-4257.39HopJ type III effector protein n=1 Tax=Tribonema m... [more]
UPI000248F8853.660e-3656.64HopJ type III effector protein n=1 Tax=Aquimarina ... [more]
UPI001E4392971.570e-3555.45HopJ type III effector protein n=3 Tax=Gammaproteo... [more]
UPI001F36D4831.570e-3554.78HopJ type III effector protein n=1 Tax=Sideroxydan... [more]
UPI00188129C83.150e-3557.66HopJ type III effector protein n=1 Tax=Cellvibrio ... [more]
UPI0016648CA51.430e-3453.91HopJ type III effector protein n=1 Tax=Shewanella ... [more]
A0A2D5GEC6_9GAMM2.260e-3459.38Type III effector n=1 Tax=Oceanospirillum sp. TaxI... [more]
A0A1U9L9Q6_9FLAO2.330e-3451.79Type III effector n=2 Tax=unclassified Polaribacte... [more]
A0A1G3IS42_9PROT4.970e-3456.64Type III effector n=1 Tax=Sideroxydans sp. RIFOXYB... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1226contigH-akashiwo_Contig1226:184769..185302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog980584.AFPB01000085_gene2511
PFAMsHopJ
Model size536
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue6e-37
EggNOG OGs2C9B9@1|root,32RP0@2|Bacteria,4NSK0@976|Bacteroidetes,1I3XD@117743|Flavobacteriia,4078H@61432|unclassified Flavobacteriaceae
DescriptionHopJ type III effector protein
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.1377892-CDS-H-akashiwo_Contig1226:184768..1853021681387126.1377892-CDS-H-akashiwo_Contig1226:184768..185302Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1226 184769..185302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1226.3.1prot_H-akashiwo_Contig1226.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1226 184769..185302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1226.3.1

>prot_H-akashiwo_Contig1226.3.1 ID=prot_H-akashiwo_Contig1226.3.1|Name=mRNA_H-akashiwo_Contig1226.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=178bp
PIKRIQQNGNLLPSCLGSPCYFLLCVVFQPWSEVSGKEYAFWFCHRKDEQ
RRRCLSPGGLPRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKN
GELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAH
GNIRNFMTKGWNGIEFGEGLGLTLKKK*
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mRNA from alignment at H-akashiwo_Contig1226:184769..185302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1226.3.1 ID=mRNA_H-akashiwo_Contig1226.3.1|Name=mRNA_H-akashiwo_Contig1226.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig1226:184769..185302+ (Heterosigma akashiwo CCMP452)
CCTATAAAAAGGATTCAACAAAATGGAAACTTACTCCCTTCTTGCCTTGG GTCTCCTTGCTATTTTCTCCTGTGTGTCGTCTTTCAGCCATGGAGTGAAG TCTCCGGCAAGGAATATGCGTTTTGGTTTTGCCATCGCAAGGATGAGCAA CGAAGAAGGTGTCTCTCCCCTGGCGGGTTGCCTCGGCAAGTAGTTGACTT CAAGATCAAGCTGGACAGCTCCCCAGATGATGTGTTCTTCGAAGAGACGA TGGGTATAATTTCCTCAAATTATGACTACACAGAAAAGCCATTTAAGAAC GGAGAGCTTTCCAATGCTGCCGGAGAAAATGGCGGGTCTTGCAAAGTATT TTCTTTTGGGAAACTTGCGGTCTTATCAGAGCAACAGACTTTGAATTGTT TTGGTGAGCATTACCGCGATGTTCTCTCTGATCCAGATGGAACTGCTCAT GGAAATATTAGAAATTTCATGACAAAAGGATGGAATGGAATTGAGTTCGG TGAAGGGCTTGGCCTGACTCTAAAAAAAAAATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1226:184769..185302+

>mRNA_H-akashiwo_Contig1226.3.1 ID=mRNA_H-akashiwo_Contig1226.3.1|Name=mRNA_H-akashiwo_Contig1226.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig1226:184769..185302+ (Heterosigma akashiwo CCMP452)
CCTATAAAAAGGATTCAACAAAATGGAAACTTACTCCCTTCTTGCCTTGG
GTCTCCTTGCTATTTTCTCCTGTGTGTCGTCTTTCAGCCATGGAGTGAAG
TCTCCGGCAAGGAATATGCGTTTTGGTTTTGCCATCGCAAGGATGAGCAA
CGAAGAAGGTGTCTCTCCCCTGGCGGGTTGCCTCGGCAAGTAGTTGACTT
CAAGATCAAGCTGGACAGCTCCCCAGATGATGTGTTCTTCGAAGAGACGA
TGGGTATAATTTCCTCAAATTATGACTACACAGAAAAGCCATTTAAGAAC
GGAGAGCTTTCCAATGCTGCCGGAGAAAATGGCGGGTCTTGCAAAGTATT
TTCTTTTGGGAAACTTGCGGTCTTATCAGAGCAACAGACTTTGAATTGTT
TTGGTGAGCATTACCGCGATGTTCTCTCTGATCCAGATGGAACTGCTCAT
GGAAATATTAGAAATTTCATGACAAAAGGATGGAATGGAATTGAGTTCGG
TGAAGGGCTTGGCCTGACTCTAAAAAAAAAATGA
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