mRNA_H-akashiwo_Contig1226.1.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: D6X3E7_TRICA (RNA-directed DNA polymerase n=1 Tax=Tribolium castaneum TaxID=7070 RepID=D6X3E7_TRICA) HSP 1 Score: 149 bits (375), Expect = 3.850e-39 Identity = 73/151 (48.34%), Postives = 109/151 (72.19%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSRL 453
W++E QEAF+ +K AL S PIL +++ PF VQ DAS +G+GA+LLQE DG+++++AY S+ + A++NYSV + E AV FA+ KF+ ++ ++ T I TDH++L L +K PT RLARW L+ FDF+++H+ GK NV+ DALSR+
Sbjct: 133 WTSEAQEAFLKIKNALVSAPILNSPNFSRPFIVQCDASDIGLGALLLQEIDGIEKIVAYASKTLSKAEKNYSVTEREALAVIFAVEKFRPFIEGTRFT-IPTDHNSLTWLFRLKEPTGRLARWIARLSQFDFDLRHIKGKLNVVPDALSRI 282
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: L7LUN9_RHIPC (RNA-directed DNA polymerase n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LUN9_RHIPC) HSP 1 Score: 146 bits (368), Expect = 9.540e-38 Identity = 80/150 (53.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W E QEAF L A+ LRL D T PF VQTDAS LG+GAVLLQE DGV + +A+ SR PA++NYSV + E A+ FAL KF YL +K V++TDHSAL LM ++ P RLARW L + +DF +Q+ G NV+ADALSR
Sbjct: 480 WGPEQQEAFCRLSSAIAETAQLRLPDLTRPFVVQTDASDLGLGAVLLQEYDGVLQPLAFASRSLVPAEKNYSVTEKECLAIVFALRKFDVYLDGTK-FVVQTDHSALSWLMRLREPAGRLARWALLIQHYDFAVQYRKGSTNVVADALSR 628
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: L7MLI7_RHIPC (RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MLI7_RHIPC) HSP 1 Score: 144 bits (362), Expect = 5.990e-37 Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W E QEAF L A+ L+L D T PF VQTDAS LG+GAVLLQE DGV + +A+ SR PA++NYSV + E A+ FAL KF YL +K V++TDH+AL LM ++ P RLARW L + +DF +Q+ G NV+ADALSR
Sbjct: 413 WGPEQQEAFCRLSSAIAETAQLKLPDLTRPFVVQTDASDLGLGAVLLQEYDGVLQPLAFASRSLIPAEKNYSVTERECLAIVFALRKFDVYLDGTK-FVVQTDHNALSWLMRLREPAGRLARWALLIQHYDFSVQYRKGSTNVVADALSR 561
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: UPI0009010E91 (uncharacterized protein LOC104899361 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009010E91) HSP 1 Score: 142 bits (358), Expect = 2.000e-36 Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 1
Query: 13 CQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSRL 453
C +AF TLK+ALTS PI++ DW+LPFE+ DAS VG VL Q ++G VIAY SR AQRNY+ + E+ AV FA KF+ YL +K V+ TDHSA+R LM+ K+ RL RW L L +FDFE++ G NV+AD LSRL
Sbjct: 329 CTKAFETLKKALTSAPIVQAPDWSLPFELMCDASDFSVGVVLGQRKEGRLHVIAYASRTLDDAQRNYATTEKEMLAVVFAFDKFRSYLTCNKA-VVYTDHSAVRYLMSKKDAKPRLIRWVLLLQEFDFEMKEKKGTENVVADHLSRL 474
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A6A3DXB1_9STRA (RT_RNaseH_2 domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DXB1_9STRA) HSP 1 Score: 137 bits (346), Expect = 9.570e-36 Identity = 69/150 (46.00%), Postives = 103/150 (68.67%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W++E ++AF +K LT+ P+L D+ LPF V TDASK+G+GA L+QERDG + +AY S++N+ + Y + +LE AV +A+ F+ YL+ K T++ +DH+AL+ LM N T +L RW L L +FDF++Q+ G NV+ADALSR
Sbjct: 13 WTSEQEQAFERIKAILTTKPLLIYPDFRLPFRVVTDASKVGLGACLMQERDGGWKPVAYASKVNSETEGKYGITELECLAVVWAIKLFRPYLYGRKFTIL-SDHAALKWLMTSPNLTGKLHRWALTLQEFDFDVQYRPGSTNVVADALSR 161
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A6A3HAH6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HAH6_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.460e-35 Identity = 70/150 (46.67%), Postives = 103/150 (68.67%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W++E ++AF +K LT+ P+L D+ LPF V TDASK+G+GA L+QERDG + +AY S++N+ + Y + +LE AV +A+ F+ YL+ K T++ TDH+AL+ LM N T +L RW L L +FDF++Q+ G NV+ADALSR
Sbjct: 351 WTSEQEQAFERIKAILTTKPLLIYPDFRLPFRVVTDASKVGLGACLMQERDGGWKPVAYASKVNSETEGKYGITELECLAVVWAIKLFRPYLYGRKFTIL-TDHAALKWLMTSPNLTGKLHRWALTLQEFDFDVQYRPGSTNVVADALSR 499
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A7D9K8X7_PARCT (Transposon Ty3-G Gag-Pol poly (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K8X7_PARCT) HSP 1 Score: 139 bits (349), Expect = 3.300e-35 Identity = 77/150 (51.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W C +AF TLK LTS PIL D++LPFE+ TDAS G+G L Q +DG R IAY A+RNYS + E A+ + KF+ YL K VI TDH ALR LM+IK+P+ RLARW L L +DF I++ SGK N+ ADALSR
Sbjct: 400 WDESCAKAFHTLKSCLTSAPILAYPDFSLPFELNTDASSTGIGFALCQTQDGKSRAIAYGGCDLNTAERNYSTTEREALAIVEGIKKFRNYLHDRK-FVIHTDHHALRWLMSIKDPSGRLARWALLLQQYDFTIEYRSGKQNLDADALSR 548
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A3B1JJM2_ASTMX (Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1JJM2_ASTMX) HSP 1 Score: 138 bits (348), Expect = 4.760e-35 Identity = 72/151 (47.68%), Postives = 101/151 (66.89%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSRL 453
W+ ECQ+AF +K+AL + P+L +++ PF++QTDAS G+GAVL Q DG++ V+AY SRL A+RNYS + E AV +A+ K++ YL TVI TDHSAL + N PT+RL RW + L FDF +Q+ GK N++ D LSR+
Sbjct: 894 WTQECQKAFEDIKQALITAPVLTPPNFSEPFQIQTDASDQGLGAVLSQGTDGLEHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVI-TDHSALSWVFNHPKPTSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRI 1043
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A6A4F5A2_9STRA (RT_RNaseH domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4F5A2_9STRA) HSP 1 Score: 138 bits (347), Expect = 6.150e-35 Identity = 70/150 (46.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W+ E + AF +K LT+ P+L D+ LPF V TDASK+G+GA L+QERDG + +AY S++N+ + Y + +LE AV +A+ F+ YL+ K T++ TDH+AL+ LM+ N T +L RW L L +FDF++Q+ G NV+ADALSR
Sbjct: 630 WTPERERAFERIKAILTTKPLLVYPDFRLPFRVVTDASKVGLGACLMQERDGGWKPVAYASKVNSETEGKYGITELECLAVVWAIKLFRPYLYGRKFTIL-TDHAALKWLMSSANLTGKLHRWALTLQEFDFDVQYRPGNTNVVADALSR 778
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: UPI001C4C04F4 (uncharacterized protein LOC121929090 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4C04F4) HSP 1 Score: 137 bits (346), Expect = 8.600e-35 Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQER-DGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
W+ CQEAF TLKRALTS P+L D+ PF + TDAS G+GAVL+QE DG + + S+ + + N+S+ + E A+ +AL K K Y+W + T ++TDH+ALR L +++ +L RW ++L DFDFEIQH++G +NV+AD LSR
Sbjct: 873 WTEGCQEAFDTLKRALTSDPVLMAPDFDKPFTIATDASDRGIGAVLMQEGPDGFLHPVLFLSKKLSARESNWSIPEKECYAIVYALDKLKPYVWGRQFT-LQTDHAALRWLHSVQGANKKLLRWSVSLQDFDFEIQHVAGASNVVADCLSR 1022 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1226.1.1 >prot_H-akashiwo_Contig1226.1.1 ID=prot_H-akashiwo_Contig1226.1.1|Name=mRNA_H-akashiwo_Contig1226.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=151bp WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERback to top mRNA from alignment at H-akashiwo_Contig1226:75878..76330+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1226.1.1 ID=mRNA_H-akashiwo_Contig1226.1.1|Name=mRNA_H-akashiwo_Contig1226.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1226:75878..76330+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1226:75878..76330+ >mRNA_H-akashiwo_Contig1226.1.1 ID=mRNA_H-akashiwo_Contig1226.1.1|Name=mRNA_H-akashiwo_Contig1226.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1226:75878..76330+ (Heterosigma akashiwo CCMP452)back to top |