mRNA_H-akashiwo_Contig1226.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1226.1.1
Unique NamemRNA_H-akashiwo_Contig1226.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: D6X3E7_TRICA (RNA-directed DNA polymerase n=1 Tax=Tribolium castaneum TaxID=7070 RepID=D6X3E7_TRICA)

HSP 1 Score: 149 bits (375), Expect = 3.850e-39
Identity = 73/151 (48.34%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSRL 453
            W++E QEAF+ +K AL S PIL   +++ PF VQ DAS +G+GA+LLQE DG+++++AY S+  + A++NYSV + E  AV FA+ KF+ ++  ++ T I TDH++L  L  +K PT RLARW   L+ FDF+++H+ GK NV+ DALSR+
Sbjct:  133 WTSEAQEAFLKIKNALVSAPILNSPNFSRPFIVQCDASDIGLGALLLQEIDGIEKIVAYASKTLSKAEKNYSVTEREALAVIFAVEKFRPFIEGTRFT-IPTDHNSLTWLFRLKEPTGRLARWIARLSQFDFDLRHIKGKLNVVPDALSRI 282          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: L7LUN9_RHIPC (RNA-directed DNA polymerase n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LUN9_RHIPC)

HSP 1 Score: 146 bits (368), Expect = 9.540e-38
Identity = 80/150 (53.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W  E QEAF  L  A+     LRL D T PF VQTDAS LG+GAVLLQE DGV + +A+ SR   PA++NYSV + E  A+ FAL KF  YL  +K  V++TDHSAL  LM ++ P  RLARW L +  +DF +Q+  G  NV+ADALSR
Sbjct:  480 WGPEQQEAFCRLSSAIAETAQLRLPDLTRPFVVQTDASDLGLGAVLLQEYDGVLQPLAFASRSLVPAEKNYSVTEKECLAIVFALRKFDVYLDGTK-FVVQTDHSALSWLMRLREPAGRLARWALLIQHYDFAVQYRKGSTNVVADALSR 628          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: L7MLI7_RHIPC (RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MLI7_RHIPC)

HSP 1 Score: 144 bits (362), Expect = 5.990e-37
Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W  E QEAF  L  A+     L+L D T PF VQTDAS LG+GAVLLQE DGV + +A+ SR   PA++NYSV + E  A+ FAL KF  YL  +K  V++TDH+AL  LM ++ P  RLARW L +  +DF +Q+  G  NV+ADALSR
Sbjct:  413 WGPEQQEAFCRLSSAIAETAQLKLPDLTRPFVVQTDASDLGLGAVLLQEYDGVLQPLAFASRSLIPAEKNYSVTERECLAIVFALRKFDVYLDGTK-FVVQTDHNALSWLMRLREPAGRLARWALLIQHYDFSVQYRKGSTNVVADALSR 561          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: UPI0009010E91 (uncharacterized protein LOC104899361 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009010E91)

HSP 1 Score: 142 bits (358), Expect = 2.000e-36
Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   13 CQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSRL 453
            C +AF TLK+ALTS PI++  DW+LPFE+  DAS   VG VL Q ++G   VIAY SR    AQRNY+  + E+ AV FA  KF+ YL  +K  V+ TDHSA+R LM+ K+   RL RW L L +FDFE++   G  NV+AD LSRL
Sbjct:  329 CTKAFETLKKALTSAPIVQAPDWSLPFELMCDASDFSVGVVLGQRKEGRLHVIAYASRTLDDAQRNYATTEKEMLAVVFAFDKFRSYLTCNKA-VVYTDHSAVRYLMSKKDAKPRLIRWVLLLQEFDFEMKEKKGTENVVADHLSRL 474          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A6A3DXB1_9STRA (RT_RNaseH_2 domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DXB1_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.570e-36
Identity = 69/150 (46.00%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W++E ++AF  +K  LT+ P+L   D+ LPF V TDASK+G+GA L+QERDG  + +AY S++N+  +  Y + +LE  AV +A+  F+ YL+  K T++ +DH+AL+ LM   N T +L RW L L +FDF++Q+  G  NV+ADALSR
Sbjct:   13 WTSEQEQAFERIKAILTTKPLLIYPDFRLPFRVVTDASKVGLGACLMQERDGGWKPVAYASKVNSETEGKYGITELECLAVVWAIKLFRPYLYGRKFTIL-SDHAALKWLMTSPNLTGKLHRWALTLQEFDFDVQYRPGSTNVVADALSR 161          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A6A3HAH6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HAH6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.460e-35
Identity = 70/150 (46.67%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W++E ++AF  +K  LT+ P+L   D+ LPF V TDASK+G+GA L+QERDG  + +AY S++N+  +  Y + +LE  AV +A+  F+ YL+  K T++ TDH+AL+ LM   N T +L RW L L +FDF++Q+  G  NV+ADALSR
Sbjct:  351 WTSEQEQAFERIKAILTTKPLLIYPDFRLPFRVVTDASKVGLGACLMQERDGGWKPVAYASKVNSETEGKYGITELECLAVVWAIKLFRPYLYGRKFTIL-TDHAALKWLMTSPNLTGKLHRWALTLQEFDFDVQYRPGSTNVVADALSR 499          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A7D9K8X7_PARCT (Transposon Ty3-G Gag-Pol poly (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K8X7_PARCT)

HSP 1 Score: 139 bits (349), Expect = 3.300e-35
Identity = 77/150 (51.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W   C +AF TLK  LTS PIL   D++LPFE+ TDAS  G+G  L Q +DG  R IAY       A+RNYS  + E  A+   + KF+ YL   K  VI TDH ALR LM+IK+P+ RLARW L L  +DF I++ SGK N+ ADALSR
Sbjct:  400 WDESCAKAFHTLKSCLTSAPILAYPDFSLPFELNTDASSTGIGFALCQTQDGKSRAIAYGGCDLNTAERNYSTTEREALAIVEGIKKFRNYLHDRK-FVIHTDHHALRWLMSIKDPSGRLARWALLLQQYDFTIEYRSGKQNLDADALSR 548          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A3B1JJM2_ASTMX (Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1JJM2_ASTMX)

HSP 1 Score: 138 bits (348), Expect = 4.760e-35
Identity = 72/151 (47.68%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSRL 453
            W+ ECQ+AF  +K+AL + P+L   +++ PF++QTDAS  G+GAVL Q  DG++ V+AY SRL   A+RNYS  + E  AV +A+ K++ YL     TVI TDHSAL  + N   PT+RL RW + L  FDF +Q+  GK N++ D LSR+
Sbjct:  894 WTQECQKAFEDIKQALITAPVLTPPNFSEPFQIQTDASDQGLGAVLSQGTDGLEHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVI-TDHSALSWVFNHPKPTSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRI 1043          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: A0A6A4F5A2_9STRA (RT_RNaseH domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4F5A2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.150e-35
Identity = 70/150 (46.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQERDGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W+ E + AF  +K  LT+ P+L   D+ LPF V TDASK+G+GA L+QERDG  + +AY S++N+  +  Y + +LE  AV +A+  F+ YL+  K T++ TDH+AL+ LM+  N T +L RW L L +FDF++Q+  G  NV+ADALSR
Sbjct:  630 WTPERERAFERIKAILTTKPLLVYPDFRLPFRVVTDASKVGLGACLMQERDGGWKPVAYASKVNSETEGKYGITELECLAVVWAIKLFRPYLYGRKFTIL-TDHAALKWLMSSANLTGKLHRWALTLQEFDFDVQYRPGNTNVVADALSR 778          
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Match: UPI001C4C04F4 (uncharacterized protein LOC121929090 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4C04F4)

HSP 1 Score: 137 bits (346), Expect = 8.600e-35
Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQER-DGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVIKTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR 450
            W+  CQEAF TLKRALTS P+L   D+  PF + TDAS  G+GAVL+QE  DG    + + S+  +  + N+S+ + E  A+ +AL K K Y+W  + T ++TDH+ALR L +++    +L RW ++L DFDFEIQH++G +NV+AD LSR
Sbjct:  873 WTEGCQEAFDTLKRALTSDPVLMAPDFDKPFTIATDASDRGIGAVLMQEGPDGFLHPVLFLSKKLSARESNWSIPEKECYAIVYALDKLKPYVWGRQFT-LQTDHAALRWLHSVQGANKKLLRWSVSLQDFDFEIQHVAGASNVVADCLSR 1022          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1226.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D6X3E7_TRICA3.850e-3948.34RNA-directed DNA polymerase n=1 Tax=Tribolium cast... [more]
L7LUN9_RHIPC9.540e-3853.33RNA-directed DNA polymerase n=1 Tax=Rhipicephalus ... [more]
L7MLI7_RHIPC5.990e-3752.00RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhi... [more]
UPI0009010E912.000e-3652.38uncharacterized protein LOC104899361 n=1 Tax=Beta ... [more]
A0A6A3DXB1_9STRA9.570e-3646.00RT_RNaseH_2 domain-containing protein n=3 Tax=Phyt... [more]
A0A6A3HAH6_9STRA2.460e-3546.67Reverse transcriptase domain-containing protein n=... [more]
A0A7D9K8X7_PARCT3.300e-3551.33Transposon Ty3-G Gag-Pol poly (Fragment) n=1 Tax=P... [more]
A0A3B1JJM2_ASTMX4.760e-3547.68Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=79... [more]
A0A6A4F5A2_9STRA6.150e-3546.67RT_RNaseH domain-containing protein n=1 Tax=Phytop... [more]
UPI001C4C04F48.600e-3547.02uncharacterized protein LOC121929090 n=1 Tax=Scelo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1226contigH-akashiwo_Contig1226:75878..76330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7070.TC012952-PA
PFAMsRVT_1,Retrotrans_gag,rve,zf-CCHC,zf-H2C2
Model size453
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.32e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta
DescriptionK02A2.6-like
Cds size453
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.1139083-CDS-H-akashiwo_Contig1226:75877..763301681387126.1139083-CDS-H-akashiwo_Contig1226:75877..76330Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1226 75878..76330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1226.1.1prot_H-akashiwo_Contig1226.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1226 75878..76330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1226.1.1

>prot_H-akashiwo_Contig1226.1.1 ID=prot_H-akashiwo_Contig1226.1.1|Name=mRNA_H-akashiwo_Contig1226.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=151bp
WSAECQEAFVTLKRALTSYPILRLSDWTLPFEVQTDASKLGVGAVLLQER
DGVKRVIAYTSRLNAPAQRNYSVFDLELSAVHFALAKFKGYLWLSKGTVI
KTDHSALRSLMNIKNPTNRLARWQLALADFDFEIQHLSGKANVIADALSR
L
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mRNA from alignment at H-akashiwo_Contig1226:75878..76330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1226.1.1 ID=mRNA_H-akashiwo_Contig1226.1.1|Name=mRNA_H-akashiwo_Contig1226.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1226:75878..76330+ (Heterosigma akashiwo CCMP452)
TGGAGTGCTGAGTGCCAAGAAGCATTTGTCACACTGAAGAGGGCGCTGAC CTCTTATCCGATCTTGAGGCTGTCGGACTGGACGTTGCCCTTTGAAGTAC AAACAGACGCCAGCAAGCTGGGAGTTGGTGCTGTGCTGTTGCAAGAGAGA GATGGAGTGAAGCGTGTGATAGCATACACTTCTAGGCTCAACGCGCCTGC ACAAAGGAACTACAGCGTATTCGATTTAGAGCTTTCAGCTGTGCATTTTG CTCTGGCTAAGTTCAAAGGATACCTCTGGCTTTCCAAGGGTACTGTGATC AAAACGGACCATTCAGCGTTGAGAAGCCTGATGAATATCAAAAACCCAAC CAACAGGCTAGCCAGGTGGCAGCTGGCACTCGCCGACTTCGACTTCGAGA TTCAGCACTTGTCTGGAAAGGCCAACGTCATCGCAGACGCACTGTCCAGA TTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1226:75878..76330+

>mRNA_H-akashiwo_Contig1226.1.1 ID=mRNA_H-akashiwo_Contig1226.1.1|Name=mRNA_H-akashiwo_Contig1226.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1226:75878..76330+ (Heterosigma akashiwo CCMP452)
TGGAGTGCTGAGTGCCAAGAAGCATTTGTCACACTGAAGAGGGCGCTGAC
CTCTTATCCGATCTTGAGGCTGTCGGACTGGACGTTGCCCTTTGAAGTAC
AAACAGACGCCAGCAAGCTGGGAGTTGGTGCTGTGCTGTTGCAAGAGAGA
GATGGAGTGAAGCGTGTGATAGCATACACTTCTAGGCTCAACGCGCCTGC
ACAAAGGAACTACAGCGTATTCGATTTAGAGCTTTCAGCTGTGCATTTTG
CTCTGGCTAAGTTCAAAGGATACCTCTGGCTTTCCAAGGGTACTGTGATC
AAAACGGACCATTCAGCGTTGAGAAGCCTGATGAATATCAAAAACCCAAC
CAACAGGCTAGCCAGGTGGCAGCTGGCACTCGCCGACTTCGACTTCGAGA
TTCAGCACTTGTCTGGAAAGGCCAACGTCATCGCAGACGCACTGTCCAGA
TTA
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