mRNA_H-akashiwo_Contig1225.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1225.2.1
Unique NamemRNA_H-akashiwo_Contig1225.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A6V1VJZ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VJZ2_HETAK)

HSP 1 Score: 493 bits (1269), Expect = 1.310e-168
Identity = 242/264 (91.67%), Postives = 253/264 (95.83%), Query Frame = 1
Query:   34 FFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYSFTDVFTKPQNK 825
            F GYDLERDRVAKTIKVTAASKIAHILDQHGLQDVH+KFTPCA GVHMSADSSSE+ DL LYQALVGAFMFVKEFRPDIN+SVG+LSRFL CPNADHMD ALYLAGYLRRTPG+GMVFGGSRDYRIRI+SDSDHGNCPD+GRSTSGIAVF GDSLIIHKSKLQHITTL APEAELVALVLSICEARWVRAMLW+LV AR RMQA+TDCMAVVHMANHQK LQRTRHLNIKRHFLHDEVSEERLSVEHIPGKY+FTDVFTKPQN+
Sbjct:  458 FVGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINFSVGKLSRFLACPNADHMDAALYLAGYLRRTPGKGMVFGGSRDYRIRIISDSDHGNCPDSGRSTSGIAVFAGDSLIIHKSKLQHITTLGAPEAELVALVLSICEARWVRAMLWQLVGARDRMQAYTDCMAVVHMANHQKGLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYNFTDVFTKPQNR 721          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A7S3Y431_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y431_HETAK)

HSP 1 Score: 412 bits (1059), Expect = 9.400e-142
Identity = 195/252 (77.38%), Postives = 228/252 (90.48%), Query Frame = 1
Query:   34 FFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKY 789
            F GYD+ERDR AKTIKVTAASK+A +L+ HGL +VH K+TPCA GVH+S+DSS +RVD+  YQ+LVGAF F++EFRPDI+++VG+LS+FLV PN DHMD ALYLAGYLRRT  +GMVFGG+RDY +R+VSDSDHGNCPDTGRSTSG+ VFVG SLI+HKSKLQHITTLSA EAELVALVL+ICEA+WV +MLWEL+R RG ++A+TDCMAVVHMANHQKHLQRTRHLNIKRHFL DEVSE+RLSVEHIPGK+
Sbjct:  129 FVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGKF 380          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A7S4DC66_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC66_HETAK)

HSP 1 Score: 412 bits (1059), Expect = 5.800e-139
Identity = 195/252 (77.38%), Postives = 228/252 (90.48%), Query Frame = 1
Query:   34 FFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKY 789
            F GYD+ERDR AKTIKVTAASK+A +L+ HGL +VH K+TPCA GVH+S+DSS +RVD+  YQ+LVGAF F++EFRPDI+++VG+LS+FLV PN DHMD ALYLAGYLRRT  +GMVFGG+RDY +R+VSDSDHGNCPDTGRSTSG+ VFVG SLI+HKSKLQHITTLSA EAELVALVL+ICEA+WV +MLWEL+R RG ++A+TDCMAVVHMANHQKHLQRTRHLNIKRHFL DEVSE+RLSVEHIPGK+
Sbjct:  326 FVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGKF 577          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A7S3Y454_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y454_HETAK)

HSP 1 Score: 412 bits (1059), Expect = 9.710e-137
Identity = 195/252 (77.38%), Postives = 228/252 (90.48%), Query Frame = 1
Query:   34 FFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKY 789
            F GYD+ERDR AKTIKVTAASK+A +L+ HGL +VH K+TPCA GVH+S+DSS +RVD+  YQ+LVGAF F++EFRPDI+++VG+LS+FLV PN DHMD ALYLAGYLRRT  +GMVFGG+RDY +R+VSDSDHGNCPDTGRSTSG+ VFVG SLI+HKSKLQHITTLSA EAELVALVL+ICEA+WV +MLWEL+R RG ++A+TDCMAVVHMANHQKHLQRTRHLNIKRHFL DEVSE+RLSVEHIPGK+
Sbjct:  502 FVGYDIERDRAAKTIKVTAASKVAQVLEAHGLGEVHPKYTPCAPGVHLSSDSSGQRVDVNTYQSLVGAFQFIREFRPDISFAVGKLSKFLVSPNLDHMDAALYLAGYLRRTASKGMVFGGARDYTVRVVSDSDHGNCPDTGRSTSGLGVFVGGSLIVHKSKLQHITTLSAAEAELVALVLAICEAKWVCSMLWELLRVRGLVRAYTDCMAVVHMANHQKHLQRTRHLNIKRHFLKDEVSEDRLSVEHIPGKF 753          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A6V1TGB8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TGB8_HETAK)

HSP 1 Score: 343 bits (881), Expect = 2.440e-112
Identity = 170/263 (64.64%), Postives = 203/263 (77.19%), Query Frame = 1
Query:   34 FFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGG--SRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYSFTDVFTKP 816
            F G DL RDR A+TIKVT  +KIA +L++HGL++ H KFTPCA GV MS DS+SE+ D+  YQ LVG   F++EFR D  ++VG LSR+L CPN DH + A YLAGYLRRT   GMVFGG     Y IRIV+DSDHG CPDT RSTSG++V++G SLIIHKSKLQH+ TLS+ EAELVAL+L++CEA+WVR ML  L R R  M A+TD MAVV MAN Q+HLQRTRHLNIKRHFL DEV+E RLSV H+ GK +  D+FTKP
Sbjct:  281 FVGLDLSRDREARTIKVTCETKIAQLLERHGLENAHKKFTPCAPGVQMSRDSTSEKADIDEYQKLVGGLQFIREFRADTAFAVGRLSRYLSCPNKDHQEAAEYLAGYLRRTADMGMVFGGRGGNPYEIRIVTDSDHGMCPDTARSTSGVSVYIGHSLIIHKSKLQHLVTLSSAEAELVALILAVCEAKWVRGMLTALTRRRPHMTAYTDSMAVVQMANQQQHLQRTRHLNIKRHFLKDEVAEGRLSVRHVRGKENTADIFTKP 543          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A7S4DE91_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE91_HETAK)

HSP 1 Score: 155 bits (392), Expect = 1.120e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1
Query:   34 FFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSV 282
            F GYDLERDRVAKTIKVTAASKIAHILDQHGLQDVH+KFTPCA GVHMSADSSSE+ DL LYQALVGAFMFVKEFRPDIN+SV
Sbjct:  458 FVGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHMKFTPCAPGVHMSADSSSEKADLQLYQALVGAFMFVKEFRPDINFSV 540          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A438ICH9_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ICH9_VITVI)

HSP 1 Score: 151 bits (382), Expect = 1.470e-38
Identity = 93/274 (33.94%), Postives = 144/274 (52.55%), Query Frame = 1
Query:    7 QVQVLAHLSFFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQA-HTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYSFTDVFTKPQNK 825
            +++ L  L +F   +E  R  K I ++       IL   G         P    + +S DS     D   Y+ LVG  +++   RPDI YSV  LSRF+  P   HM+VAL +  YL+ +PG+G+ F    D  +R  SDSD   CP + RST+G  VF+G SLI  ++K Q   +LS+ +AE  A+  + C+  W+R++L +L     ++   + D  A +H+A +    +RTRH+ +  HF+HD++ +  +  +HI       DVFTKP  K
Sbjct:  276 RIKDLGDLKYF-LGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNIKLS-DSGELLKDPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEVALCVLRYLKNSPGQGLFFPSQNDLSLRAFSDSDWAGCPISRRSTTGYCVFLGSSLISWRTKRQKTVSLSSAKAECRAMTGTCCKLSWLRSLLKDLRILHPKLALLYCDNTAALHIAVNPVFHERTRHIEMDCHFIHDKIQDGSVVTKHIASTNQLADVFTKPLGK 547          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: UPI000B8C943D (uncharacterized protein LOC110818467 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C943D)

HSP 1 Score: 145 bits (365), Expect = 7.050e-38
Identity = 76/221 (34.39%), Postives = 123/221 (55.66%), Query Frame = 1
Query:  154 PCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWEL-VRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYSFTDVFTK 813
            P    + MS D      D+  Y+ L+G  +++   RPDI YSV  LS+FL  P   H+  AL +  Y++RTPG+G+ F  S   +I+  SD+D   CPDT RS +G  VF+G SLI  KSK Q + + S+ EAE  ++  + CE  W+  +L +L V+ +G    + D  A +H+A++  + +R +H+    HF+ +++ +  +   HI  +    D+ TK
Sbjct:   82 PMDPNIKMSKDDGELLSDITSYRRLIGKLLYLIISRPDICYSVNRLSQFLAAPRTSHLQAALRILQYIKRTPGQGLFFPSSSAIQIKAFSDADWATCPDTRRSITGFCVFLGSSLISWKSKKQQVVSRSSAEAEYRSMANTTCEIVWILKLLRDLKVQHQGPALLYCDNQAALHIASNPMYHERIKHIEFDCHFVREKIQDGTVKTMHISTRNQLADIITK 302          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: A0A836DGX9_9ROSI (Mitochondrial protein n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DGX9_9ROSI)

HSP 1 Score: 143 bits (361), Expect = 2.080e-37
Identity = 83/266 (31.20%), Postives = 139/266 (52.26%), Query Frame = 1
Query:   19 LAHLSFF-GYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYSFTDVFTK 813
            L  L FF G ++ R +    I ++       ILD  G         P      +S D      +   Y+ LVG  +++   RPDI YSV  LS+F+  P   H D AL +  YL++ PG G+++  +   ++R   D++  NCP T RST+G  VF+GDSLI  K++ Q  T+ S+ EAE  ++  + CE  W+R++  EL      ++ + D  A +H+A +  + +RT+H+ I  H + +++   ++  + IP ++   D+FTK
Sbjct:   27 LGKLKFFLGLEVARSKAG--IVISQRKYTLEILDDVGFLGAKPVDFPMEQNSKLSNDQGEILKNAASYRRLVGRLIYLTITRPDITYSVNILSQFMHEPRIPHWDAALRVVKYLKKNPGNGLLYSSNSPLQLRAYCDANWANCPMTRRSTTGFCVFLGDSLISWKTRKQKTTSRSSAEAEYRSMAAATCELTWLRSLFEELQVHFKPIELYCDNQAALHIAANPVYHERTKHIEIDCHVVREKIQAGKIVTKFIPSQFQLADIFTK 290          
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Match: UPI0007C160AF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Prunus mume TaxID=102107 RepID=UPI0007C160AF)

HSP 1 Score: 144 bits (362), Expect = 6.780e-37
Identity = 92/276 (33.33%), Postives = 140/276 (50.72%), Query Frame = 1
Query:    7 QVQVLAHLSFFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKFTPCALGVHMS--ADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRFLVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPDTGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVRAMLWEL-VRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVSEERLSVEHIPGKYSFTDVFTKPQNK 825
            +++ L  L +F   +E  R  K I V+       IL  +G     L   P    +  +  +D      D   Y+ LVG  +++   RPDI YSV  LSRF+  P   HMD AL +  YL+ TPG+G++F       +    DSD   CP T  ST+G  VF+G+SLI  ++K Q   +LS+ EAE  A+  + CE  W+R +L +L + + G    + D  A +H+A +    +RTRH+ +  HF+HD++ +  +S  H+       D F KP  K
Sbjct:   95 RIKDLGDLKYF-LGIEVSRSKKGIYVSQRKYALEILKDYGF----LGARPIDFPMEEAKLSDKGELLKDPQKYRRLVGRLLYLTITRPDITYSVHVLSRFMHQPRLPHMDAALQVVRYLKSTPGQGLLFQSDNKLDLITYCDSDWAGCPITRLSTTGYCVFLGNSLISRRTKRQRTVSLSSAEAEYRAMASTCCEVTWLRFLLQDLHLPSSGASCMYCDNQAALHIAANPVFHERTRHIEMDCHFIHDKILDGTISTWHVNSSQQLADTFAKPLGK 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1225.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1VJZ2_HETAK1.310e-16891.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y431_HETAK9.400e-14277.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DC66_HETAK5.800e-13977.38Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y454_HETAK9.710e-13777.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1TGB8_HETAK2.440e-11264.64Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DE91_HETAK1.120e-3991.57Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A438ICH9_VITVI1.470e-3833.94Retrovirus-related Pol polyprotein from transposon... [more]
UPI000B8C943D7.050e-3834.39uncharacterized protein LOC110818467 n=1 Tax=Caric... [more]
A0A836DGX9_9ROSI2.080e-3731.20Mitochondrial protein n=1 Tax=Salix suchowensis Ta... [more]
UPI0007C160AF6.780e-3733.33uncharacterized mitochondrial protein AtMg00810-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1225contigH-akashiwo_Contig1225:337987..338811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog981085.XP_010095761.1
PFAMsCLU_N,TPR_12,eIF3_p135
Model size825
Max annot lvl35493|Streptophyta
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-35
EggNOG OGsCOG2801@1|root,KOG1839@1|root,KOG0017@2759|Eukaryota,KOG1839@2759|Eukaryota,37HWS@33090|Viridiplantae,3G83W@35493|Streptophyta,4JF31@91835|fabids
DescriptionClustered mitochondria protein
Cds size825
COG categoryL
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387126.0900557-CDS-H-akashiwo_Contig1225:337986..3388111681387126.0900557-CDS-H-akashiwo_Contig1225:337986..338811Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1225 337987..338811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1225.2.1prot_H-akashiwo_Contig1225.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1225 337987..338811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1225.2.1

>prot_H-akashiwo_Contig1225.2.1 ID=prot_H-akashiwo_Contig1225.2.1|Name=mRNA_H-akashiwo_Contig1225.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=275bp
LIQVQVLAHLSFFGYDLERDRVAKTIKVTAASKIAHILDQHGLQDVHLKF
TPCALGVHMSADSSSERVDLGLYQALVGAFMFVKEFRPDINYSVGELSRF
LVCPNADHMDVALYLAGYLRRTPGEGMVFGGSRDYRIRIVSDSDHGNCPD
TGRSTSGIAVFVGDSLIIHKSKLQHITTLSAPEAELVALVLSICEARWVR
AMLWELVRARGRMQAHTDCMAVVHMANHQKHLQRTRHLNIKRHFLHDEVS
EERLSVEHIPGKYSFTDVFTKPQNK
back to top

mRNA from alignment at H-akashiwo_Contig1225:337987..338811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1225.2.1 ID=mRNA_H-akashiwo_Contig1225.2.1|Name=mRNA_H-akashiwo_Contig1225.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=825bp|location=Sequence derived from alignment at H-akashiwo_Contig1225:337987..338811- (Heterosigma akashiwo CCMP452)
TTAATTCAAGTACAAGTTCTTGCCCACCTCTCATTTTTTGGCTATGATCT TGAGCGTGATCGGGTGGCCAAGACCATCAAGGTCACTGCTGCCAGCAAAA TTGCTCACATTCTCGACCAGCACGGTCTCCAGGATGTACACTTGAAGTTC ACACCTTGTGCTCTTGGGGTTCATATGTCTGCTGACTCCTCCTCTGAGAG GGTGGATCTTGGGCTGTACCAAGCCCTTGTTGGGGCTTTTATGTTTGTCA AGGAGTTCCGGCCTGACATCAACTATTCTGTTGGCGAGCTCTCCAGGTTC CTGGTCTGTCCCAATGCTGACCACATGGATGTGGCTCTCTATCTCGCTGG TTATCTGCGCCGCACGCCGGGGGAGGGCATGGTGTTTGGTGGGTCGCGTG ACTACCGCATCAGGATTGTCAGTGATAGTGATCATGGCAATTGCCCGGAC ACTGGCAGATCTACCTCTGGCATAGCCGTGTTCGTTGGCGACTCCCTCAT CATCCACAAGTCCAAGCTCCAGCACATCACCACCTTGAGTGCTCCCGAGG CGGAGCTGGTCGCTCTTGTTCTTTCCATTTGCGAGGCCAGGTGGGTGCGC GCCATGCTCTGGGAGCTGGTCAGGGCTCGGGGTCGCATGCAGGCACACAC TGATTGCATGGCTGTTGTCCACATGGCGAACCACCAGAAGCACCTGCAGC GCACCCGGCATCTCAACATTAAGAGGCATTTTCTGCATGATGAGGTCTCT GAGGAGCGTCTGTCTGTTGAGCACATCCCTGGCAAGTACAGTTTCACTGA TGTTTTTACCAAGCCGCAGAACAAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1225:337987..338811-

>mRNA_H-akashiwo_Contig1225.2.1 ID=mRNA_H-akashiwo_Contig1225.2.1|Name=mRNA_H-akashiwo_Contig1225.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=825bp|location=Sequence derived from alignment at H-akashiwo_Contig1225:337987..338811- (Heterosigma akashiwo CCMP452)
TTAATTCAAGTACAAGTTCTTGCCCACCTCTCATTTTTTGGCTATGATCT
TGAGCGTGATCGGGTGGCCAAGACCATCAAGGTCACTGCTGCCAGCAAAA
TTGCTCACATTCTCGACCAGCACGGTCTCCAGGATGTACACTTGAAGTTC
ACACCTTGTGCTCTTGGGGTTCATATGTCTGCTGACTCCTCCTCTGAGAG
GGTGGATCTTGGGCTGTACCAAGCCCTTGTTGGGGCTTTTATGTTTGTCA
AGGAGTTCCGGCCTGACATCAACTATTCTGTTGGCGAGCTCTCCAGGTTC
CTGGTCTGTCCCAATGCTGACCACATGGATGTGGCTCTCTATCTCGCTGG
TTATCTGCGCCGCACGCCGGGGGAGGGCATGGTGTTTGGTGGGTCGCGTG
ACTACCGCATCAGGATTGTCAGTGATAGTGATCATGGCAATTGCCCGGAC
ACTGGCAGATCTACCTCTGGCATAGCCGTGTTCGTTGGCGACTCCCTCAT
CATCCACAAGTCCAAGCTCCAGCACATCACCACCTTGAGTGCTCCCGAGG
CGGAGCTGGTCGCTCTTGTTCTTTCCATTTGCGAGGCCAGGTGGGTGCGC
GCCATGCTCTGGGAGCTGGTCAGGGCTCGGGGTCGCATGCAGGCACACAC
TGATTGCATGGCTGTTGTCCACATGGCGAACCACCAGAAGCACCTGCAGC
GCACCCGGCATCTCAACATTAAGAGGCATTTTCTGCATGATGAGGTCTCT
GAGGAGCGTCTGTCTGTTGAGCACATCCCTGGCAAGTACAGTTTCACTGA
TGTTTTTACCAAGCCGCAGAACAAG
back to top