mRNA_H-akashiwo_Contig1222.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1222.1.1
Unique NamemRNA_H-akashiwo_Contig1222.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1222.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1222contigH-akashiwo_Contig1222:32789..33450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size662
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387125.512795-UTR-H-akashiwo_Contig1222:32788..328121681387125.512795-UTR-H-akashiwo_Contig1222:32788..32812Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1222 32789..32812 +
1681387125.5296924-UTR-H-akashiwo_Contig1222:33166..334501681387125.5296924-UTR-H-akashiwo_Contig1222:33166..33450Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1222 33167..33450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387125.521444-CDS-H-akashiwo_Contig1222:32812..331661681387125.521444-CDS-H-akashiwo_Contig1222:32812..33166Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1222 32813..33166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1222.1.1prot_H-akashiwo_Contig1222.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1222 32813..33166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1222.1.1

>prot_H-akashiwo_Contig1222.1.1 ID=prot_H-akashiwo_Contig1222.1.1|Name=mRNA_H-akashiwo_Contig1222.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
MGHNRERKFILTVVERLQRPSSDGDKKDGKHEWRTFSRSKEFDSLSDCIH
CIQQQVVPCGQQYSKTSQFGTSTMETVSVEIHNDREVMFSSTSISFWGAT
FEELLYRLQQQLYFQNS*
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mRNA from alignment at H-akashiwo_Contig1222:32789..33450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1222.1.1 ID=mRNA_H-akashiwo_Contig1222.1.1|Name=mRNA_H-akashiwo_Contig1222.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=662bp|location=Sequence derived from alignment at H-akashiwo_Contig1222:32789..33450+ (Heterosigma akashiwo CCMP452)
GAACACGAGGAGCTTGGAGTGAAAATGGGCCATAACCGGGAACGGAAATT
CATACTGACGGTCGTGGAAAGACTACAGCGTCCATCGTCTGATGGAGACA
AAAAAGATGGCAAACACGAGTGGAGAACCTTCTCAAGATCCAAAGAGTTT
GATTCCCTGAGCGACTGCATACACTGTATTCAACAGCAAGTGGTTCCATG
CGGTCAACAATATAGTAAAACTTCTCAGTTTGGCACAAGCACCATGGAGA
CAGTATCAGTGGAAATCCACAATGATCGCGAAGTGATGTTCTCTAGCACC
TCCATAAGTTTCTGGGGAGCAACTTTTGAAGAGCTACTGTATCGATTACA
GCAACAGCTGTACTTTCAAAACTCGTAGCAGGCAAGCACTTATGTGCTGA
GAACGACCACGGGTGGTGGGGTACATATATCTTGTTTGTAACTTCATGAC
TACACACATCTTTCATGCGCTGCTACATTCGTGATTGCGCTGTCACAGCT
TTGGAGCTGTTACAGCTTCTTCTGCCAAAGTGCATGCTTTGGAGAAGGTT
TTGTATTATTTACTGATACATTGAAATGAATGTGACTACTATTGCTGGTG
GTATGAAAGTACAGTTCGTCTTCCAGCAAATAATGCTACCTCTTCCCACA
GCAGCTACTGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1222:32789..33450+

>mRNA_H-akashiwo_Contig1222.1.1 ID=mRNA_H-akashiwo_Contig1222.1.1|Name=mRNA_H-akashiwo_Contig1222.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1222:32789..33450+ (Heterosigma akashiwo CCMP452)
ATGGGCCATAACCGGGAACGGAAATTCATACTGACGGTCGTGGAAAGACT
ACAGCGTCCATCGTCTGATGGAGACAAAAAAGATGGCAAACACGAGTGGA
GAACCTTCTCAAGATCCAAAGAGTTTGATTCCCTGAGCGACTGCATACAC
TGTATTCAACAGCAAGTGGTTCCATGCGGTCAACAATATAGTAAAACTTC
TCAGTTTGGCACAAGCACCATGGAGACAGTATCAGTGGAAATCCACAATG
ATCGCGAAGTGATGTTCTCTAGCACCTCCATAAGTTTCTGGGGAGCAACT
TTTGAAGAGCTACTGTATCGATTACAGCAACAGCTGTACTTTCAAAACTC
GTAG
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