mRNA_H-akashiwo_Contig1221.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1221.3.1
Unique NamemRNA_H-akashiwo_Contig1221.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A7S3Y0L7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0L7_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 2.720e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:    3 LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL
Sbjct:  370 LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 417
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A7S2DUA6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DUA6_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 1.770e-9
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:    3 LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            LRR  LE+ VR  GGL A VAE GGNLS G+RQLLC+ARA LRRA IL
Sbjct:   21 LRRSGLEAKVRQLGGLEAGVAEAGGNLSAGERQLLCMARALLRRASIL 68
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A7S4DD06_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD06_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 4.070e-9
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:    3 LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            L  V+L+  V+ QGGLGA+VAEGGGN SVGQRQLLCL RA L R  +L
Sbjct:  216 LAAVRLDGAVKAQGGLGASVAEGGGNWSVGQRQLLCLGRALLARHRVL 263
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A7S3Y5Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Z6_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 4.110e-9
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:    3 LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            L  V+L+  V+ QGGLGA+VAEGGGN SVGQRQLLCL RA L R  +L
Sbjct:  216 LAAVRLDGAVKAQGGLGASVAEGGGNWSVGQRQLLCLGRALLARHRVL 263
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A699YZC2_HAELA (ATP-binding cassette transporter (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YZC2_HAELA)

HSP 1 Score: 53.5 bits (127), Expect = 2.120e-7
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:    3 LRRVKLESVVRG-QGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            +RR  L   VRG  GGL A + EGG NLSVGQRQLLC+ARA LR + IL
Sbjct:   31 VRRASLTDFVRGLDGGLDAVIKEGGANLSVGQRQLLCMARALLRASRIL 79
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A836BXM2_9CHLO (ABC transporter domain-containing protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXM2_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 2.310e-7
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:    3 LRRVKLESVVRG-QGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            LR V+L   V    GGLGAA+A GGGNLSVGQRQL CLARA L+ A +L
Sbjct:  185 LRAVRLREAVGALPGGLGAAIAHGGGNLSVGQRQLFCLARALLQDAKVL 233
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BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.410e-7
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:    3 LRRVKLESVVRG-QGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            L  V++++ V+   GGL A VAEGGGNLSVGQRQLLCLARA L+R+ IL
Sbjct:  194 LEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQIL 242
[Close]
BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: A0A1V9XCM1_9ACAR (Canalicular multispecific organic anion transporter 1-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XCM1_9ACAR)

HSP 1 Score: 55.1 bits (131), Expect = 2.470e-7
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 LRRVKLESVVRGQGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            L R  L+    GQ GL   ++EGGGNLSVGQRQL+CLARA LR+  IL
Sbjct:  487 LERAHLKQYFEGQNGLETEISEGGGNLSVGQRQLVCLARAVLRKTRIL 534
[Close]
BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:    3 LRRVKLESVVRG-QGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            L  V++++ V+   GGL A VAEGGGNLSVGQRQLLCLARA L+R+ IL
Sbjct: 1259 LEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQIL 1307
[Close]
BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:    3 LRRVKLESVVRG-QGGLGAAVAEGGGNLSVGQRQLLCLARAALRRAPIL 146
            L  V++++ V+   GGL A VAEGGGNLSVGQRQLLCLARA L+R+ IL
Sbjct: 1290 LEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQIL 1338
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1221.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y0L7_HETAK2.720e-19100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2DUA6_9EUKA1.770e-970.83Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4DD06_HETAK4.070e-966.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y5Z6_HETAK4.110e-966.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A699YZC2_HAELA2.120e-763.27ATP-binding cassette transporter (Fragment) n=1 Ta... [more]
A0A836BXM2_9CHLO2.310e-765.31ABC transporter domain-containing protein n=2 Tax=... [more]
D8LSW5_ECTSI2.410e-765.31ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1V9XCM1_9ACAR2.470e-760.42Canalicular multispecific organic anion transporte... [more]
D8LSW3_ECTSI2.490e-765.31Multidrug resistance-associated protein-like prote... [more]
D8LSW4_ECTSI2.490e-765.31Multidrug resistance-associated protein-like prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1221contigH-akashiwo_Contig1221:116036..117241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387125.043333-CDS-H-akashiwo_Contig1221:116035..1161881681387125.043333-CDS-H-akashiwo_Contig1221:116035..116188Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1221 116036..116188 -
1681387125.0539057-CDS-H-akashiwo_Contig1221:117217..1172411681387125.0539057-CDS-H-akashiwo_Contig1221:117217..117241Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1221 117218..117241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1221.3.1prot_H-akashiwo_Contig1221.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1221 116036..117241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1221.3.1

>prot_H-akashiwo_Contig1221.3.1 ID=prot_H-akashiwo_Contig1221.3.1|Name=mRNA_H-akashiwo_Contig1221.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
LCAGSSLRAWCAGRGVWARPWPRAGATSAWASASCSASRGPRSAGRPSSV
GAGGPGRG*
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mRNA from alignment at H-akashiwo_Contig1221:116036..117241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1221.3.1 ID=mRNA_H-akashiwo_Contig1221.3.1|Name=mRNA_H-akashiwo_Contig1221.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-akashiwo_Contig1221:116036..117241- (Heterosigma akashiwo CCMP452)
CTTTGCGCAGGGTCAAGCTTGAGAGTGAGCCTTGTTGTTGGTGCATCTAC
TGCTATCACAGCACCACACCAGCCAACGCCCCCCCCCCCCTCCTCCTCCT
CCTCCTCCCCTCCAAAAATGAATAATTTTATTTTTTCATCTGCATCTGTC
CAGATGATACACTCTCGACGTGCGGGAAGGAGAAGAAGCACTCGTTGATG
GATATGGGTTGTTAGAAGAAGCACCTACGGTAGAGATGAAGGAGAAGAAG
CACTCGTCGATGGATATATAGGTTGTTGGAAGAAGTACCTACGGTAGAGA
TAACTGAAAGAGGGCGATGAGGCCAAAGGGCAATAGAGCATGTAGGGTCA
ACGGCAGCTGGAACTTCGGTTAGTCAGTAGCCAGACTTGGTCCAGCGAAG
TGCTCAGATATCAAGGCAGCCTGCAAATAGACGGTGGTTGTGTGGCTCAG
GATGTGAAGGGGCGCATTGCAAGTAGAACGTAGGGGAAAAGAATACTGTG
ATCACTTTTTGGTTTGTTTTTTTATATATCTCTAGAACGCCATAGTCTTT
CATTTTTCTTCTTCCGTGATCCGTTCGTGCAATATCAAGCACACCTTACA
TTCAATATATAGCTTCACCTCGCTATGGTCAGAGCAATAGTCCTTTCATT
CCAAGCCACAGGGTAAGCTTGTGCTCTAGTAATGCAGGAGAGAAATATTG
TGTGTGTATACAACATGGTGAAAATTTTTGAGGGGTGTCCAGGAATCCTA
AGGCTTGGCACCTTGTTGATAAAGGGTCACCAAACGACCTGAAATATTCA
GTAATAAACATTTCGTTGGATTATATTTATGCTCATACTCAATGGAAAGT
AACCACATGGTGAAAATTTATCGGCCTGCTTTTCAGCACCATTTTCAAAC
ACCCAAGATGTTGCCCGACATCGGGAAAAGTGACAAGCAGAGTCCGGCAC
CGCATCAGTCGGTGCGCCGCGGCGCAGACCTCTCCGCAGGGCCCCCACCC
GCGCGCCAAGCGCCCCCGCCCCCCCCACCCACCCGGGCGGGGGCGGGCCC
CAGGCGTGGTGCGCGGGCAGGGGGGTCTGGGCGCGGCCGTGGCCGAGGGC
GGGGGCAACCTCAGCGTGGGCCAGCGCCAGCTGCTCTGCCTCGCGCGGGC
CGCGCTCCGCCGGGCGCCCATCCTCGGTGGGTGCGGGCGGGCCGGGGCGG
GGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1221:116036..117241-

>mRNA_H-akashiwo_Contig1221.3.1 ID=mRNA_H-akashiwo_Contig1221.3.1|Name=mRNA_H-akashiwo_Contig1221.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1221:116036..117241- (Heterosigma akashiwo CCMP452)
CTTTGCGCAGGGTCAAGCTTGAGAGCGTGGTGCGCGGGCAGGGGGGTCTG
GGCGCGGCCGTGGCCGAGGGCGGGGGCAACCTCAGCGTGGGCCAGCGCCA
GCTGCTCTGCCTCGCGCGGGCCGCGCTCCGCCGGGCGCCCATCCTCGGTG
GGTGCGGGCGGGCCGGGGCGGGGGTGA
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