mRNA_H-akashiwo_Contig1221.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1221.1.1
Unique NamemRNA_H-akashiwo_Contig1221.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 475 bits (1223), Expect = 1.730e-166
Identity = 229/310 (73.87%), Postives = 267/310 (86.13%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKALNAEIFE 930
            M+AVYVDDLV+S    +VV+  K S AS++++TD G L  ILGIKV RD RNKCF+LSQ SFI+DA++KFGLD+LPAC+TP+D T +LTPTPGFK+ L D+N YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYLKGTQSE LRLGGDLVLRA++D+DFC DR DGKSV+GY++ LGD+PIVW+SKLQ AVTTSTVEAEYLALRS +KDI WLR LL ++ CPQ EPTPVVEDNSAC+EWA DM+V+++ RHFHV YHLAKEQ++LGTIRM Y+KT DQ+ DI TKALNA  FE
Sbjct:   32 MVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 341          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 229 bits (583), Expect = 1.140e-70
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYL 453
            M+AVYVDDLV+S    ++V+  K S AS++N+TD G L  ILGIKV RD RNKCF+LSQ SFI+DA++KFGLD+LPAC+TP+D T +LTPTPGFK+ L D+N YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYL
Sbjct:  118 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 244 bits (623), Expect = 3.510e-70
Identity = 127/307 (41.37%), Postives = 189/307 (61.56%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDT--TANLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKALN 915
            +I+VYVDD+VL+S   S ++ +K + +  +N++D+G ++SILGIKV RD   +   LSQ SFI +A  KF +        P++     N+      + S  ++ ++RS+VGT+ W+A WT PE+A+++H L +  ++P      A+    RYL  T+ + + LGG L L AY DADFC +R+ G+S SG+ I LG SPI+W+S++Q  VT +T EAEY++LR+ + D+ WL+ LL  L   Q    P+ EDN ACI WA D  VS+  RH HV YH  KE +    I + YV T  Q+ D+FTK L+
Sbjct:  677 LISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: UPI00098DD449 (uncharacterized protein LOC109818890 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DD449)

HSP 1 Score: 201 bits (512), Expect = 1.510e-58
Identity = 115/311 (36.98%), Postives = 175/311 (56.27%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGG--DLVLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKALNAEIF 927
            ++ +YVDDL+ + + PS+    K      F +TD+G +   LGI+V +   N+  +++Q S+ +D + KF LD      TPM+    L+     +    D   Y+S+VG+L ++   TRP++ + V  + RY   P   H + A+R  RY+KGT S  L      D  L  Y+D+D+  D +D KS SG+V  +GD+   W SK Q  VT ST EAEY+A  S +    WLR+LL +L+ PQ EPT +  DN + I  A++ V   +++H H  YH  +E ++   ++M YVKT DQ+ DIFTK L  E+F
Sbjct:   68 IVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEVKQG--NEGIFITQESYAKDLLKKFKLDDANPVGTPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 373          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 197 bits (501), Expect = 9.560e-57
Identity = 112/309 (36.25%), Postives = 174/309 (56.31%), Query Frame = 1
Query:    4 IAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLT----PTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLV--LRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKAL 912
            I +YVDDL+++S   + +  +K      F + DLG +  ILGI+V  D+  K   L Q  +I D + +F         TP+D +  +T    P    + ++     +RS++G+L+++A  TRP++A  V +L RY  NP  +H++AA +  RYLKGT++  +  GG +   L AY+DAD+  DR+D +SVSG V+ML  +P+VW +  Q  V  ST EAEY+AL   +K+  W R LL +L   Q   T + EDN   I  AR+     +T+H  + YH  +E++  G I + Y+ T +Q+ D  TK L
Sbjct:   67 ICLYVDDLLIASPDMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A2N9GQ59_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GQ59_FAGSY)

HSP 1 Score: 206 bits (525), Expect = 2.010e-56
Identity = 117/305 (38.36%), Postives = 176/305 (57.70%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGD--LVLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKA 909
            ++ +YVDD++++ D  S +  LKA  +  F + DLG L   LG+++T    +  FYL+QA +  D +S+ GL       TP++  A LTP+ G    LPD   YR +VG+L ++   TRP++++ VH++ ++ S P   H+ A  R  RYLKGT    L       L LRAY+DAD+  D  D +S +GY  +LG S I W SK Q+ V  S+ EAEY AL     ++ WLR LL DL    +  TP+  DN + I+ AR+ V   +T+H  +  HL +  L  G++++ +V + DQL DIFTK+
Sbjct:  849 LLLLYVDDMIITGDDLSGIQELKAFLSQNFEMKDLGHLSYFLGLEITSS--DDGFYLTQAKYTSDLLSRAGLTDHKILDTPIELNARLTPSSG--ELLPDPTLYRQLVGSLVYLTV-TRPDISYAVHQVSQFMSAPRSTHYAAVLRILRYLKGTLFHGLHFSAQSPLTLRAYSDADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADTTSELLWLRWLLQDLGVSTSSATPIYCDNRSAIQIARNDVFHERTKHIEIDCHLVRHHLLQGSLQLIFVSSHDQLADIFTKS 1148          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A2N9GUM2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GUM2_FAGSY)

HSP 1 Score: 206 bits (525), Expect = 2.090e-56
Identity = 117/305 (38.36%), Postives = 176/305 (57.70%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGD--LVLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKA 909
            ++ +YVDD++++ D  S +  LKA  +  F + DLG L   LG+++T    +  FYL+QA +  D +S+ GL       TP++  A LTP+ G    LPD   YR +VG+L ++   TRP++++ VH++ ++ S P   H+ A  R  RYLKGT    L       L LRAY+DAD+  D  D +S +GY  +LG S I W SK Q+ V  S+ EAEY AL     ++ WLR LL DL    +  TP+  DN + I+ AR+ V   +T+H  +  HL +  L  G++++ +V + DQL DIFTK+
Sbjct:  888 LLLLYVDDMIITGDDLSGIQELKAFLSQNFEMKDLGHLSYFLGLEITSS--DDGFYLTQAKYTSDLLSRAGLTDHKILDTPIELNARLTPSSG--ELLPDPTLYRQLVGSLVYLTV-TRPDISYAVHQVSQFMSAPRSTHYAAVLRILRYLKGTLFHGLHFSAQSPLTLRAYSDADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADTTSELLWLRWLLQDLGVSTSSATPIYCDNRSAIQIARNDVFHERTKHIEIDCHLVRHHLLQGSLQLIFVSSHDQLADIFTKS 1187          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A6A3Q978_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q978_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.170e-56
Identity = 111/311 (35.69%), Postives = 180/311 (57.88%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPT--PGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDL--VLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKALNAE 921
            ++ +YVDD++++S   +V+  +KA  A +F I DLG    ILGI++  D+  +   +SQ ++    I KFG +    C TP++   NLT    P  + +   S  YRS+VG+L ++A  TRP+++  V KL R+  NP  KH++A  +  RYL  T+   +   G L   L AY++AD+  +R+D +SVSG ++ML  +P+VW S  Q  V  S+ EAEY+AL   +K+  W+RHLL D+   Q   T + EDN   +  A+++    +T+H  + YH  +E++    + + YV T +QL D  TK L+++
Sbjct:  498 IVCLYVDDMLIASRQKAVIASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGVNLTKADEPQTEEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSNADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRHLLKDIGTEQVGVTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSTEVELEYVDTKNQLADFMTKGLSSK 808          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.870e-56
Identity = 108/313 (34.50%), Postives = 176/313 (56.23%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLT----PTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDL--VLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKALNAE 921
            ++ +YVDD++++S   +V+  +KA  A +F I D+G    ILGI++  D+  +   +SQ ++    I KFG +    C TP++    LT    P      +   S  YRS+VG+L ++A  TRP+++  V KL R+  NP  KH++A  +  RYL  T+   +   G L   L AY+DAD+  +R+D +SVSG ++M+  +P+VW S  Q  V  S+ EAEY+AL   +K+  W+R LL D+   Q   T   EDN   +  A+++     T+H  + YH  +E++ +  + + YV T +QL D  TK L+++
Sbjct:   73 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLNDIGAEQVGATVRYEDNQGAMALAKNVGYQAHTKHIDIRYHFIREKVVINEVELEYVDTKNQLADFMTKGLSSK 385          
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Match: A0A507DR08_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR08_9FUNG)

HSP 1 Score: 204 bits (519), Expect = 3.970e-56
Identity = 118/319 (36.99%), Postives = 186/319 (58.31%), Query Frame = 1
Query:    4 IAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTP--TPGFKSSL-PDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLV-LRAYTDADFCQDRNDGKSVSGYVIMLGDS-PIVWASKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQ-----AEPTPVVEDNSACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIFTKALNAEIFE 930
            I+VYVDDL++ +   S ++ +KAS  + FN T+LG ++  LG++V RD      YL Q S++ D + +FG+       TPMD T  L P      K+S  P    YR +VG+L ++   TRP++A  V  L R+ SNP P+H +AA+R  RYL+GT +  L +GG+ V L  Y+DAD+  +  D +S++GY+  +G++ P+ WASK Q  V  S+ EAEY+AL    ++  WLR LL +L  P+     A  T + +DN +CI  A + V   +T+H  + +H  ++ ++   I + Y+ T++ + D  TK L A  F+
Sbjct:  417 ISVYVDDLLIFAKNKSEMSSIKASLHNEFNTTNLGKVNHYLGMRVRRDYTRHVIYLDQESYVNDILERFGMQDCKPVNTPMDQT-KLEPYEVENTKTSPNPQEGEYREIVGSLMYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETTWLRSLLQELQIPEYLDENARSTTIYKDNQSCISLAMNPVHHARTKHIDIRHHFIRDHVD-KEIHLEYLPTAEMVADSLTKPLPAPAFK 733          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.730e-16673.87Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK1.140e-7072.85Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK3.510e-7041.37Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI00098DD4491.510e-5836.98uncharacterized protein LOC109818890 n=1 Tax=Cajan... [more]
A0A6A3JMT1_9STRA9.560e-5736.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GQ59_FAGSY2.010e-5638.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GUM2_FAGSY2.090e-5638.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q978_9STRA2.170e-5635.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4F359_9STRA2.870e-5634.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DR08_9FUNG3.970e-5636.99DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1221contigH-akashiwo_Contig1221:37218..38147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35725.K2R9C2
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size930
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.82e-52
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota
Descriptionretrotransposon
Cds size930
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387125.1355898-CDS-H-akashiwo_Contig1221:37217..381471681387125.1355898-CDS-H-akashiwo_Contig1221:37217..38147Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1221 37218..38147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1221.1.1prot_H-akashiwo_Contig1221.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1221 37218..38147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1221.1.1

>prot_H-akashiwo_Contig1221.1.1 ID=prot_H-akashiwo_Contig1221.1.1|Name=mRNA_H-akashiwo_Contig1221.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=310bp
MIAVYVDDLVLSSDIPSVVTGLKASFASRFNITDLGPLDSILGIKVTRDL
RNKCFYLSQASFIRDAISKFGLDFLPACRTPMDTTANLTPTPGFKSSLPD
SNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRY
LKGTQSERLRLGGDLVLRAYTDADFCQDRNDGKSVSGYVIMLGDSPIVWA
SKLQTAVTTSTVEAEYLALRSGLKDIKWLRHLLVDLACPQAEPTPVVEDN
SACIEWARDMVVSRKTRHFHVLYHLAKEQLNLGTIRMHYVKTSDQLVDIF
TKALNAEIFE
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mRNA from alignment at H-akashiwo_Contig1221:37218..38147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1221.1.1 ID=mRNA_H-akashiwo_Contig1221.1.1|Name=mRNA_H-akashiwo_Contig1221.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=930bp|location=Sequence derived from alignment at H-akashiwo_Contig1221:37218..38147+ (Heterosigma akashiwo CCMP452)
ATGATCGCGGTGTATGTGGATGATCTGGTCCTGAGTAGCGATATTCCTTC TGTCGTTACTGGTCTCAAGGCCTCCTTTGCCTCGAGGTTCAACATCACCG ATCTGGGTCCTCTGGACTCAATTCTCGGCATCAAGGTGACCCGGGACCTT CGTAATAAGTGCTTTTATCTGAGTCAGGCTTCTTTCATCAGGGATGCCAT CTCCAAGTTCGGTTTGGACTTCCTTCCAGCTTGCCGCACTCCCATGGACA CCACCGCTAATTTAACTCCCACGCCTGGCTTCAAGTCTTCCTTGCCTGAT TCCAACAGGTATAGATCAATGGTTGGCACCCTGGCTTGGGTGGCCAACTG GACCCGGCCTGAGCTTGCTTTTACTGTGCACAAGCTTCAGAGATATCAAA GTAATCCTGAACCCAAGCATTTTGAGGCTGCCCAGAGAGCATTCAGGTAT CTCAAAGGCACCCAATCTGAGAGGCTGAGGCTTGGGGGGGACCTGGTCCT CCGTGCATACACTGATGCTGACTTCTGTCAGGACAGAAATGATGGCAAGT CTGTCTCTGGCTATGTTATCATGCTTGGGGACTCACCTATTGTATGGGCC TCAAAGCTTCAGACTGCAGTTACTACGTCCACTGTGGAGGCTGAGTATCT GGCACTGAGATCTGGGCTTAAGGACATAAAATGGCTGAGGCATCTTCTTG TGGACCTTGCATGCCCTCAGGCTGAACCTACACCAGTGGTTGAGGACAAC TCTGCCTGTATTGAGTGGGCAAGGGATATGGTTGTTTCCAGAAAGACCAG GCACTTCCATGTGTTGTACCATCTGGCTAAGGAGCAATTGAACCTTGGGA CCATCAGGATGCACTATGTCAAGACCAGTGACCAGTTGGTTGACATATTT ACCAAGGCTTTGAATGCAGAAATTTTTGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1221:37218..38147+

>mRNA_H-akashiwo_Contig1221.1.1 ID=mRNA_H-akashiwo_Contig1221.1.1|Name=mRNA_H-akashiwo_Contig1221.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=930bp|location=Sequence derived from alignment at H-akashiwo_Contig1221:37218..38147+ (Heterosigma akashiwo CCMP452)
ATGATCGCGGTGTATGTGGATGATCTGGTCCTGAGTAGCGATATTCCTTC
TGTCGTTACTGGTCTCAAGGCCTCCTTTGCCTCGAGGTTCAACATCACCG
ATCTGGGTCCTCTGGACTCAATTCTCGGCATCAAGGTGACCCGGGACCTT
CGTAATAAGTGCTTTTATCTGAGTCAGGCTTCTTTCATCAGGGATGCCAT
CTCCAAGTTCGGTTTGGACTTCCTTCCAGCTTGCCGCACTCCCATGGACA
CCACCGCTAATTTAACTCCCACGCCTGGCTTCAAGTCTTCCTTGCCTGAT
TCCAACAGGTATAGATCAATGGTTGGCACCCTGGCTTGGGTGGCCAACTG
GACCCGGCCTGAGCTTGCTTTTACTGTGCACAAGCTTCAGAGATATCAAA
GTAATCCTGAACCCAAGCATTTTGAGGCTGCCCAGAGAGCATTCAGGTAT
CTCAAAGGCACCCAATCTGAGAGGCTGAGGCTTGGGGGGGACCTGGTCCT
CCGTGCATACACTGATGCTGACTTCTGTCAGGACAGAAATGATGGCAAGT
CTGTCTCTGGCTATGTTATCATGCTTGGGGACTCACCTATTGTATGGGCC
TCAAAGCTTCAGACTGCAGTTACTACGTCCACTGTGGAGGCTGAGTATCT
GGCACTGAGATCTGGGCTTAAGGACATAAAATGGCTGAGGCATCTTCTTG
TGGACCTTGCATGCCCTCAGGCTGAACCTACACCAGTGGTTGAGGACAAC
TCTGCCTGTATTGAGTGGGCAAGGGATATGGTTGTTTCCAGAAAGACCAG
GCACTTCCATGTGTTGTACCATCTGGCTAAGGAGCAATTGAACCTTGGGA
CCATCAGGATGCACTATGTCAAGACCAGTGACCAGTTGGTTGACATATTT
ACCAAGGCTTTGAATGCAGAAATTTTTGAG
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