mRNA_H-akashiwo_Contig122.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig122.9.1
Unique NamemRNA_H-akashiwo_Contig122.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig122.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig122contigH-akashiwo_Contig122:681095..681936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size578
Hectar predicted targeting categorysignal peptide
Exons2
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.6089194-CDS-H-akashiwo_Contig122:681094..6812301681387124.6089194-CDS-H-akashiwo_Contig122:681094..681230Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 681095..681230 -
1681387124.619246-CDS-H-akashiwo_Contig122:681494..6819101681387124.619246-CDS-H-akashiwo_Contig122:681494..681910Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 681495..681910 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.6291883-UTR-H-akashiwo_Contig122:681910..6819361681387124.6291883-UTR-H-akashiwo_Contig122:681910..681936Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig122 681911..681936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig122.9.1prot_H-akashiwo_Contig122.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig122 681095..681910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig122.9.1

>prot_H-akashiwo_Contig122.9.1 ID=prot_H-akashiwo_Contig122.9.1|Name=mRNA_H-akashiwo_Contig122.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=184bp
MGLHPQSTCLISMLLVSLQCVSSFMVYRGTLPPTFRPAQFEKQDERLLSS
MLCSDRGLKTELWAQLSNSPEEGDAIFEGDFELKEMSARDASRNLENWIE
RHFQSQRDAGNDDPRGTYSDPIIILQQMQDWAIAARFRSTKTVKRVLFAL
DQEDVIQGISCTEVITKEGAGSAEFKVRFHSGN*
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mRNA from alignment at H-akashiwo_Contig122:681095..681936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig122.9.1 ID=mRNA_H-akashiwo_Contig122.9.1|Name=mRNA_H-akashiwo_Contig122.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=842bp|location=Sequence derived from alignment at H-akashiwo_Contig122:681095..681936- (Heterosigma akashiwo CCMP452)
TTGTTGTTGATTCTCCATTCTATACGATGGGCCTGCACCCACAATCCACA
TGCTTGATCAGCATGCTGCTGGTGTCACTACAATGCGTAAGCTCGTTCAT
GGTTTATAGGGGAACGCTCCCACCCACCTTCAGGCCAGCTCAATTTGAAA
AACAAGATGAGCGGTTACTTTCTTCAATGTTGTGTAGCGACCGCGGTTTA
AAGACAGAGCTTTGGGCGCAGCTCTCCAACTCACCTGAAGAGGGCGACGC
TATATTTGAGGGGGACTTCGAGCTCAAAGAAATGAGCGCAAGGGATGCCA
GCAGAAACTTGGAAAATTGGATCGAACGCCACTTCCAGTCTCAAAGAGAT
GCAGGTAATGATGACCCCAGAGGCACATACAGCGACCCAATCATCATCCT
CCAACAAATGCAAGACTGGGCAATTGCAGCACGATTCAGGAGGTATGACC
AGCCATGACTGCCATCGAATACATAAAAATAAATGCAAAAGTGTTGATTT
TCACTAGCATTTTTTAATTCTTCTATATTTTTTTGTTTTTGATAAATTGT
TATGCCCTTCACATCCTGAGGCATGTATTCTCACCAGCTGACAGCATGTA
CATGTTGCGCAATGCTCCACGCCACAAAAAGAGACGTGCACTGGAACATC
GAACCCAGTACAGATTTTCCCCTCTCTCCTCCTGTGTGGCTGTACATCAC
TGGCAGTACCAAAACCGTGAAAAGGGTTCTTTTTGCTCTGGACCAAGAAG
ATGTTATCCAAGGCATCAGTTGCACAGAAGTGATCACCAAAGAAGGAGCC
GGAAGCGCAGAGTTCAAGGTGAGATTTCACAGTGGCAATTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig122:681095..681936-

>mRNA_H-akashiwo_Contig122.9.1 ID=mRNA_H-akashiwo_Contig122.9.1|Name=mRNA_H-akashiwo_Contig122.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=552bp|location=Sequence derived from alignment at H-akashiwo_Contig122:681095..681936- (Heterosigma akashiwo CCMP452)
ATGGGCCTGCACCCACAATCCACATGCTTGATCAGCATGCTGCTGGTGTC
ACTACAATGCGTAAGCTCGTTCATGGTTTATAGGGGAACGCTCCCACCCA
CCTTCAGGCCAGCTCAATTTGAAAAACAAGATGAGCGGTTACTTTCTTCA
ATGTTGTGTAGCGACCGCGGTTTAAAGACAGAGCTTTGGGCGCAGCTCTC
CAACTCACCTGAAGAGGGCGACGCTATATTTGAGGGGGACTTCGAGCTCA
AAGAAATGAGCGCAAGGGATGCCAGCAGAAACTTGGAAAATTGGATCGAA
CGCCACTTCCAGTCTCAAAGAGATGCAGGTAATGATGACCCCAGAGGCAC
ATACAGCGACCCAATCATCATCCTCCAACAAATGCAAGACTGGGCAATTG
CAGCACGATTCAGGAGTACCAAAACCGTGAAAAGGGTTCTTTTTGCTCTG
GACCAAGAAGATGTTATCCAAGGCATCAGTTGCACAGAAGTGATCACCAA
AGAAGGAGCCGGAAGCGCAGAGTTCAAGGTGAGATTTCACAGTGGCAATT
GA
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