mRNA_H-akashiwo_Contig122.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig122.10.1
Unique NamemRNA_H-akashiwo_Contig122.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig122.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig122contigH-akashiwo_Contig122:805245..810866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.6593716-CDS-H-akashiwo_Contig122:805244..8053641681387124.6593716-CDS-H-akashiwo_Contig122:805244..805364Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 805245..805364 -
1681387124.6784441-CDS-H-akashiwo_Contig122:810806..8108661681387124.6784441-CDS-H-akashiwo_Contig122:810806..810866Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig122 810807..810866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig122.10.1prot_H-akashiwo_Contig122.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig122 805245..810866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig122.10.1

>prot_H-akashiwo_Contig122.10.1 ID=prot_H-akashiwo_Contig122.10.1|Name=mRNA_H-akashiwo_Contig122.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
APAAGGKPPRRPKRPSGRRALLGQSWVAQELSVSRQGLNHRCFHSRTHCC
HEHTEIVEK*
back to top

mRNA from alignment at H-akashiwo_Contig122:805245..810866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig122.10.1 ID=mRNA_H-akashiwo_Contig122.10.1|Name=mRNA_H-akashiwo_Contig122.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5622bp|location=Sequence derived from alignment at H-akashiwo_Contig122:805245..810866- (Heterosigma akashiwo CCMP452)
GCACCGGCGGCGGGCGGGAAGCCCCCGCGGCGACCGAAGCGCCCGTCGGG
CCGCCGTGCCGTGGTGAGGCCTTTCGGCAGGGGGGAAGGAACGGGGGGGG
GCCGGTGCCGAGTCGGCAACTAACTGCGAGCGTGGGAACGGGGGGGCCGG
TGCCGAGTCGGCAACCGCGAGCGTGCGTCCCGGTGTGGGGAGGGGGGGTC
TGGGGAGCTGGTTGTCTGGGCAACGGTCGTTGTTGTATAGATGTGGCGGG
GGCTGGAGTAAGAAGGTGCAGCGAGTAGCATCGCACGAAGGCAGTGGGCT
CAGCTGGGCGGTGATCACGGGCGGCGGTGGAGATCTGGGGGACGGAGCTC
CAAAATTGCACAAGAAGCTGCTGTGGGAACACCGTGGCAACGGGAAGAGC
TGTGCAAGAACAAGCTGGCTCTACTTGGCAGGTATTGTGTTTGGCACGCA
GTGCGAGGAGTTTGGCTCTGGTTGCTGTGTTCAAGCAACACTGAAATCTA
GGCTAGTTTTTCGGGGGGCATCTACGTTTTTTCATATACAATGCCTCCCC
CCGTTGCATGGCAACACGCTTCACTGCCACTGTACATGCGGCCAAATTCT
GGCAACCTCATCGGAGCATCACGGTCGGTATGGGAGTGACCTTGGCTACT
CCTGCAGTCTTTGTGACCGTTGGGTGATGTTCCAGTAGTTCATGGCGCTG
CCTGACTTCATACTTTTCTTCCTCGGGACTCTTTCTTCCAGCCTTTCCAT
CTCAGCAACAACGAAGTAACCCAGCGGTGAAAAAAAAGTTCTGGCTCTAT
GAAATGCCAGCCAGGCCAAAAACAGAGAGTGCAGCGCAGCACCCCATTCA
AGCCACTACCGGCCCACCATTCAAAGCTCCATACCAGTGGCTTCAGCAGC
CCACCGAACCCATTCAGCCACCCGCTCCCGCCGAAACCACTGTCGCCTCG
CCACCGTACAGCTCCTTCTTGGCTGTTGCCCCAAAAGCCAATCCCATCAG
GTGGTGGGTACCTCGCCCTTCAAAGGTCTGAAAATGGGAAAGTGCTCACA
AAACTACACCGTTGCACGTGGTTGGGTCCATGAGCGAGGAATGAAGCACG
CACTAGCTGATTTTTACCTGAAAGAGTGTAAGAGCGTGCGTGCAGTTCAT
ATATAGCAAACGGAGCTCACCCGAGATCCAAGACCATGCCAAATCCACCC
ACAGGATGATTTATTATTACCTATAACTTACTTGGCGCATTTTAACGTCT
GACTAGATAGACTGCCATCCCTGATCACTCAGTTTGGCGCCTCCATCACC
ATGATTACAGCAGGTAGATATATGAAGATTTTTATTGATCAGAAAAAAAA
GAAAAAAAAACGATCCTAACAACACCCCATGCTATGGCAGCTATGCCTGT
ATTTCGGGGACTCCGCCCCCCACGGCTGGCTCTACATCAGCCACCAGCCT
TCTTCAGGCTATACGTTGAGTGTTGATGTGTTATGGGGATTGACTACAGC
TCTCCTCAGCAGAAGATGAAAAAGTCGTCAGTAAAGATGATTTTCTGCTC
TCACTGAAATTTCAATTCTGATGACAAAAAAACAGATCCATCAATATGAA
TGATTTTTCCTCTTAAGATCCCAGCTCGCTGTGTCTTGTTGTTATACATG
AAACTACTTTTTTGATCCGCGGGGGTAAAAACATACTTTGTCGGGCCAAA
TCTGGGTGAATTGTTTTTTCATCTTCCCGTGAGTTACCATTAAAATAGGG
TGTGGCATAAATCAGCAGGATGTCAAAGACCTTTCGGCGTTATTAAGATT
GTCACCCTCGGATTTCAGTTTGATGCCCTGGAATTTCAGAAAATTCTTTG
GAAATTTAGAAATTTCTTATTCCAGAACAATTGGAGTTCGTTCGAGTTCA
CGTTTGAACACTTCAGCTTGAAACTGGAATACAGAGATGCACAAAGCACC
TCTCACCCAGCAACAAGCTGCCGTTGCTTAACCATGACACGAACGCTATG
GAAGTGAGTGGGTGCGGACAGTGATGCTGAATGCAGGAGGCGTCTCCTGC
ATCCAACAACATTGATGCTTGACCACACACCACCACGATCGTGGATGTAT
GCAGAGGGTCATCCGGCAATGCCGAGAGACCGATGCTCAAACCATGTAAA
ATCATGTTTCATCAACAAATCAAACCCGCACACTTTTTCTTTTTAAGTGG
GCTCAGCTAGCTTATGTTCTAGGAAAAGAAGAAGAAATTTCTTTGGGCGG
CAGAAAAGCAGTATGATGATGATGCCATAGGTCATTCTTCGTACGAAGTA
CATGCAAGAAGGAAAAGGGCGGCTCCTTCTATTGCATAGCACGGTTAGCG
CATAGTTGTACGAAGTATATGTACCATGAAGGAAAATTTGAGGTGCCATA
CTGGGACTAGTTGCTCTCTGCACTAGCTACCACTTTATGCTGTATATTTG
ATCCACCATCATTAATGGGCCTTTCTGTACTCCTTAACATATAAAAATAT
TTTCACTTTGTACGTTCGGGAGGCAAAATTTTATTTTGAATTGACCCGAC
TTAAGAGTTTCTACTAGTCTTGAAGAGGGTGGCAGCTGCGCTGGCTGGTA
AGTGGGGGAAATTATATGAGAAGGTGATGCGCTGGGTGAGAATCAGATTG
CAGTTTGCACTGATTCGGGCGGTGGACCTGAGGTGTCGGGGGTCTAGGGT
GAGGTTTCATGGGGCAGGGTTCAGTGATGGAGCAGGGCTATGCAGGGTGT
TTTAGGGTGTGGGCTTATCTTCTTTACTGTAGGCGTGGTGTGAAGTAGTA
TAGTATAGTTGGGTTGGATTACTTGTTATTATTATGATTGTGTTGTGTTG
TGTTGTTGTTGCTCTTGATGATGATCATGATCATTCCACAGCAGGTTTTT
CTTAACTATAACTCCGTATCGTCTTGAATTGACTTTATCCATCAAACCCA
AGCACTATGAAGTACTTGTATCCATAAATGGTCCCGTATGTGTTCTTACC
ACGCAACTGTTAGATGAATCGCACCCAAACCCGTGACACTACTAACCTGG
ATCCGTGCCACTCGTTAGTTTCCAAATCCTTTAAAACTACCTGCCCCCTT
GGCGAGTGATACTAATTCGTACCCAAAATCCATTAAACTACCAGCCCCCT
AGGCGAGTGATACTGATTAGTACTACCCGAATCATTTAAAACTACCTGCC
CCCTTGGCGAGAGATACTGTTTCGTACCCAAAATCCATGAAACTACCATC
CCCCTAGGCGAGTGATACTGATCAGGACCGTTGCTCATTTTAGTGATTGA
AACACGTGGCTATAGAAAATATATATAAGCGCCACGAGTTTAGAAGTTTC
ACAGCCCCAGTTTGAACACAGCAAAGGCTTTCATGAAAGTTCAGTCTTAC
CGTAGTCACCAAACTAGATTGTAAAAACAGGCATTTTGCTTGTACCCACT
TGGGTCAAAAATAGCATTGCTAACCCTTGGCGACAAAGAGAAAGTTTGCC
TCCCTTGATCAATCCAGAAATCCAACAGTGCCCTCGGGTGGTGCCCGAGG
GCATTGTTGGATTTCTGGATTGATCAAGGGAGACAAACTTTCTCTCTGTC
CCCACGGGGTGCAAATATAGTTTTTTTCTTTGAATGTTCTTATTTTCCGC
CGACTGCTTTAGACAGAAATGAAAAGTGCATGAAAAATAGATTTCCAAGG
TATGGCCGTCTGTTTGTCCTCTCATTAAAACTTACTTGGCGCATTTTAAC
GTCTGCAGGGTTTTTGTCATCAGAATATAAGTTTCGGTGAAAGCGCACGT
CATGTTTGCTGGTGATTTTTCCATTTTCTGCTGAGGAGAGCTGTAGTCAC
TCCCCATCATCAACACTCAAGGTATAAGGCTGGTGGCTGATGTAGAGCCA
GCCGTGGGGTGGAGTCCCCGAAATGCAGGCATAGCTGCCACAGCATGGGG
TGTTGTTAGGATAGCTTCTTTTTTTTCCTGATCAAAAAAAAAATCACATC
TACCTGCTGTAATGATGGTGATGGAGGTGCCAAATTGAGTGATCAGTGGT
GGCAGTCTATCTAGTCAGACTTCAAAATGCACCAAGTAATAAGTTTTAGG
TAATAATGAAACTGGTCTTGACAAGCTGGGAAACTACACCAACTGTATCC
ATACCGCCCAGACGCGGCTCCCTAGTTTTCGGCCACCTATCCTCATTGAG
GTAGAGGCCTAATATAGGGTAACTGCGATGAAGGCGGGCCCTTGATCATA
CAAAGCCTACCCTGATGAACAGACCACTTGCCACAAATGTAATTACAGAG
CCGGTTGACTCTTGTCTATCGAAGATCGAGGTCTTAAACTATTCAGTGTT
GAGTTTATCTATATCTGGGGACAAGTGAGAGAAAAAACAGACGGCCAGAT
CTTGGAAAGCTAGTTTTTGTGCACTTTTTTCATTTCTGTCTATAGCAGTC
GGTAGAAAAGAAGAATATTCAAAGAAAAAAACACTTTTATGTTCAACAAC
AAGACACAGCGAGCTGGTATCTTTGCTGTGATTGGTGGATGGTCCAACAG
TAAAGGCTAAGGACAAATCATATAGGTGGATCTGTTTTTTGTCATCAGAA
TTGAAATTTCAGTGAGAGCAGGAAATCATGTTTGCTTACAATTTTTTCAT
TTTCTGCTGAGGAGAGCTGTTGTCATTCCCCATGATCACCACTCAAGGTA
GCCTGAACAAGGCTGGTGGCTGATGTAGAGCCAGCCGTGGGGTGAAGTCT
TCGAAATGCAGGCATAGCTGCCATAGAGTGGGGTGTTGTTAGGATAGCTT
TTTTTTTTCTCGTCAATACAAATGTTCACATATCTATATTACCTGCTGTG
GTGATGGTGATGAAGGTGCCAAACTGAGTGATCAGTGGTGGCAGTCTCTC
TAGTCAGACGTTAAAATGCGTCAAGTAAGTTTTAGGTAATAATGAATCTG
GTCTCGACAAGCTGGAAAACAATATCAACTGTATAAATAGAATGATGCGC
ATCAGTACATAGAAACAGGGGCTGTGTAGGATATCTGAAAAACATATATG
CCTTGCTTGGTCACAAGTGTGAGAGCGACCCAAAAGTGGGCGCCGTATCC
ATGGGTCATTAAGGCATTAAAATACTGGAGTCATTCGAAACGTCAACTTC
TACCCCAGAACAGACAATTCATTTAAGTGCCAGAAGGGCTGCTCTCAAAT
AGAGCACTGCAGGTGTTGTTTGCGCAGGTGTTGAAAATGATGGCTGGAGC
GCTAATATATACAGGCTGCATCAATAATATATGGGTTACAGTTATGGCAT
CACTAGTAAATTGCATCAAACTTCATTAATTTTGGAAAGCTCCAGCTGGT
TGTGAAAAAGGCATCGGATCAACCTGACCCAAGGTGTTTTTGTACTGTTT
CATTTTCCGGCATCGGATGCGTTGCCTTGCCATTACATTACATGAGTATT
TATGTGATTTTGTTGTGCGCATTTTATCTTCCCCCCCGCCCCCCTCCATT
AGCTTCTGGGGCAATCATGGGTCGCTCAAGAACTTTCAGTGTCAAGGCAG
GGATTGAACCATCGCTGCTTCCATAGCAGAACGCACTGTTGCCACGAGCA
TACTGAAATTGTTGAGAAGTAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig122:805245..810866-

>mRNA_H-akashiwo_Contig122.10.1 ID=mRNA_H-akashiwo_Contig122.10.1|Name=mRNA_H-akashiwo_Contig122.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig122:805245..810866- (Heterosigma akashiwo CCMP452)
GCACCGGCGGCGGGCGGGAAGCCCCCGCGGCGACCGAAGCGCCCGTCGGG
CCGCCGTGCCCTTCTGGGGCAATCATGGGTCGCTCAAGAACTTTCAGTGT
CAAGGCAGGGATTGAACCATCGCTGCTTCCATAGCAGAACGCACTGTTGC
CACGAGCATACTGAAATTGTTGAGAAGTAG
back to top