mRNA_H-akashiwo_Contig1219.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1219.6.1
Unique NamemRNA_H-akashiwo_Contig1219.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A7S3UWJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWJ0_HETAK)

HSP 1 Score: 213 bits (542), Expect = 2.640e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 FGDVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQT 312
            FGDVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQT
Sbjct:   71 FGDVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQT 174          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853F1T4_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F1T4_9GAMM)

HSP 1 Score: 134 bits (337), Expect = 1.270e-33
Identity = 71/148 (47.97%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD VVG +DGTL Y++N G+ +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG   GTL +++NT           S+ +YE +TG +NP+NGI     S+P + DIDGDG  DL++ + + G +  Y N+
Sbjct:  422 DIDGDGDLDLVVGENDGTLKYYQNTGTTSSPAYEAKTGGNNPFNGIDVGGYSTPNLADIDGDGDLDLVVGKDDGTLKYYQNTGT--------TSNPTYEAKTGDSNPFNGIDVVNYSSPILVDIDGDGDLDLVVGE-NDGTLKYYQNT 560          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853F206_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F206_9GAMM)

HSP 1 Score: 134 bits (336), Expect = 1.830e-33
Identity = 70/147 (47.62%), Postives = 98/147 (66.67%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYIN 447
            D+D DGDLD VVG S+GTL Y++N G+ ++P++E  T G++PF+ IDVG YS P   D D DGDLDLVVG  +GTL +++NT           S+ +YE +TG +NP++GI   G SAP + DIDGDG  DL++ + + G +  Y N
Sbjct:  714 DIDGDGDLDLVVGESNGTLKYYQNTGTTSNPAYEAKTGGSNPFNSIDVGNYSKPTLADIDGDGDLDLVVGEQNGTLKYYQNTGT--------TSNPAYEAKTGGDNPFDGIDVGGYSAPTLADIDGDGDLDLVIGE-TDGTLKYYYN 851          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853EYX0_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853EYX0_9GAMM)

HSP 1 Score: 132 bits (333), Expect = 4.940e-33
Identity = 70/148 (47.30%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD VVG  +GTL Y++N G+ +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG  +GTL +++NT++         S+ +YE +TG +NP+NGI    +S+P + DIDGDG  DL++ + + G +  Y N+
Sbjct: 2416 DIDGDGDLDLVVGERNGTLKYYQNTGTTSSPAYEAKTGGNNPFNGIDVGGYSSPTLADIDGDGDLDLVVGENNGTLKYYQNTSS--------TSNPAYEAKTGDSNPFNGIDVGYSSSPTLADIDGDGDLDLVVGE-NYGTLKYYQNT 2554          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853EZS9_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853EZS9_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 5.910e-33
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD V+G + GTL Y++N G+ +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG  +GTL +++NT           S+ +YE +TG +NP+NGI     S P + DIDGDG  DL++ +  +G +  Y N+
Sbjct:    3 DIDGDGDLDLVMGEAYGTLKYYQNTGTTSSPAYEAKTGGNNPFNGIDVGGYSTPTLADIDGDGDLDLVVGEQNGTLKYYQNTGT--------TSNPAYEAETGDSNPFNGIDVGRYSKPTLADIDGDGDLDLVVGE-RNGTLKYYQNT 141          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853F890_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F890_9GAMM)

HSP 1 Score: 130 bits (326), Expect = 6.470e-33
Identity = 71/148 (47.97%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD +VG  DGTL Y++N GS +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG   GTL +++NT           S+ +YE +TG +NP+NGI    +S+P + DIDGDG  DL++ +  +G +  Y N+
Sbjct:   21 DIDGDGDLD-LVGKDDGTLKYYQNTGSTSSPAYEAKTGGNNPFNGIDVGIYSAPTLADIDSDGDLDLVVGENDGTLKYYQNTGT--------TSNPAYEAKTGDDNPFNGINAGYSSSPILVDIDGDGDLDLVVGE-RNGTLKYYQNT 158          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853EY84_9GAMM (VCBS repeat-containing protein n=2 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853EY84_9GAMM)

HSP 1 Score: 132 bits (331), Expect = 9.100e-33
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD VVG S+GTL Y++N G+ ++P++E  T  ++PF+GIDVG  + P   D D DGDLDLVVG  +GTL +++NT+          S+ +YE +TG +NP+NGI   G S P + DIDGDG  DL++ + S+G +  Y N+
Sbjct:  886 DIDGDGDLDLVVGESNGTLKYYQNTGTTSNPAYEAKTGDSNPFNGIDVGNAATPTLADIDSDGDLDLVVGENNGTLKYYQNTST--------TSNPTYEAKTGDSNPFNGIDVGGYSTPNLADIDGDGDLDLVMGE-SNGTLKYYQNT 1024          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853EY73_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853EY73_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 1.220e-32
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD VVG  +GTL Y++N G+ +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG   GTL +++NT           S+ +YE + G +NP+NGI    +S P + DIDGDG  DL++ + S G +  Y N+
Sbjct:  285 DIDGDGDLDLVVGEQNGTLKYYQNTGTTSSPAYEVKTGGNNPFNGIDVGGYSTPNLADIDGDGDLDLVVGKDDGTLKYYQNTGT--------TSNPTYEAKIGDSNPFNGIDVGYHSTPTLADIDGDGDLDLVVGE-SDGTLKYYQNT 423          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: F0YR92_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YR92_AURAN)

HSP 1 Score: 124 bits (311), Expect = 2.060e-32
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 FGDVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGK-----YSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLIL 408
            F D+D DGDLD VVG  DGTLSY++N GS  SPS+E +T   +PFDGIDVG      +S+PA  D D DGDLDLVVG   G LF+++N        G A S   Y   TG+ +P++ +    NSAPA+GD+DGDG  DL++
Sbjct:    8 FADLDGDGDLDLVVGYDDGTLSYYENVGSAASPSYEAVTGSANPFDGIDVGDDNVDYHSMPALADLDGDGDLDLVVGEYWGALFYYENV-------GSAASPT-YSAVTGNASPFDDVDVGRNSAPALGDLDGDGDLDLVV 140          
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Match: A0A853F6W2_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F6W2_9GAMM)

HSP 1 Score: 127 bits (319), Expect = 2.490e-32
Identity = 67/148 (45.27%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    7 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISYEEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS 450
            D+D DGDLD VVG  +GTL Y++N G+ ++P++E  T  ++PF+GID G  S P   D D DGDLDLVVG G+GTL +++NT           S+ +YE +TG +NP+NGI     S P + DIDGDG  DL++ +  +G +  Y N+
Sbjct:   87 DIDGDGDLDLVVGEENGTLKYYQNTGTTSNPTYEAKTGDSNPFNGIDAGSASSPTLADIDGDGDLDLVVGEGNGTLKYYQNTGT--------TSNPAYEVKTGDSNPFNGIDVRNYSTPTLADIDGDGDLDLVVGE-QNGTLKYYQNT 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1219.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UWJ0_HETAK2.640e-68100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A853F1T4_9GAMM1.270e-3347.97VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853F206_9GAMM1.830e-3347.62VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853EYX0_9GAMM4.940e-3347.30VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853EZS9_9GAMM5.910e-3346.62VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853F890_9GAMM6.470e-3347.97VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853EY84_9GAMM9.100e-3346.62VCBS repeat-containing protein n=2 Tax=Candidatus ... [more]
A0A853EY73_9GAMM1.220e-3247.30VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
F0YR92_AURAN2.060e-3250.35Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A853F6W2_9GAMM2.490e-3245.27VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1219contigH-akashiwo_Contig1219:225006..225455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009033457.1
PFAMsEphrin_rec_like
Model size450
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.83e-31
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
Cds size450
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.5771115-CDS-H-akashiwo_Contig1219:225005..2254551681387124.5771115-CDS-H-akashiwo_Contig1219:225005..225455Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1219 225006..225455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1219.6.1prot_H-akashiwo_Contig1219.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1219 225006..225455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1219.6.1

>prot_H-akashiwo_Contig1219.6.1 ID=prot_H-akashiwo_Contig1219.6.1|Name=mRNA_H-akashiwo_Contig1219.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
FGDVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDV
GKYSVPAFIDYDDDGDLDLVVGCGSGTLFFFKNTAARRLGEGRALSDISY
EEQTGSNNPYNGITTTGNSAPAVGDIDGDGQDDLILADGSSGEVSLYINS
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mRNA from alignment at H-akashiwo_Contig1219:225006..225455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1219.6.1 ID=mRNA_H-akashiwo_Contig1219.6.1|Name=mRNA_H-akashiwo_Contig1219.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig1219:225006..225455+ (Heterosigma akashiwo CCMP452)
TTTGGTGATGTAGATGATGATGGTGATCTTGACTGGGTTGTTGGTGGCTC TGATGGCACCCTTTCGTACTTTAAGAACGAAGGAAGCAAGACTAGTCCTT CTTTTGAGGAAATCACCGATGGTACTAGCCCATTTGATGGCATTGATGTT GGTAAATACAGTGTACCTGCTTTCATTGATTACGATGATGATGGTGATCT TGACCTGGTGGTGGGCTGCGGCAGTGGCACACTTTTCTTCTTCAAAAATA CTGCGGCTCGCCGTCTTGGCGAGGGTCGTGCACTTTCAGACATAAGCTAT GAAGAGCAGACAGGGTCCAATAACCCGTATAATGGCATCACAACTACAGG TAATAGTGCCCCTGCGGTAGGGGACATTGACGGTGACGGCCAAGATGATC TTATTCTTGCTGATGGTAGCTCTGGTGAGGTGTCACTGTACATCAACTCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1219:225006..225455+

>mRNA_H-akashiwo_Contig1219.6.1 ID=mRNA_H-akashiwo_Contig1219.6.1|Name=mRNA_H-akashiwo_Contig1219.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig1219:225006..225455+ (Heterosigma akashiwo CCMP452)
TTTGGTGATGTAGATGATGATGGTGATCTTGACTGGGTTGTTGGTGGCTC
TGATGGCACCCTTTCGTACTTTAAGAACGAAGGAAGCAAGACTAGTCCTT
CTTTTGAGGAAATCACCGATGGTACTAGCCCATTTGATGGCATTGATGTT
GGTAAATACAGTGTACCTGCTTTCATTGATTACGATGATGATGGTGATCT
TGACCTGGTGGTGGGCTGCGGCAGTGGCACACTTTTCTTCTTCAAAAATA
CTGCGGCTCGCCGTCTTGGCGAGGGTCGTGCACTTTCAGACATAAGCTAT
GAAGAGCAGACAGGGTCCAATAACCCGTATAATGGCATCACAACTACAGG
TAATAGTGCCCCTGCGGTAGGGGACATTGACGGTGACGGCCAAGATGATC
TTATTCTTGCTGATGGTAGCTCTGGTGAGGTGTCACTGTACATCAACTCT
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