mRNA_H-akashiwo_Contig1219.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1219.3.1
Unique NamemRNA_H-akashiwo_Contig1219.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 200 bits (508), Expect = 2.770e-57
Identity = 94/114 (82.46%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    7 PQNYRPVSVLPTLATTFERVLMPQLSAFLLPHIPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRALFV 348
            P+NYRP+SVLPTLATTFERVLMPQL++FL+ HIP  QF F+PDTGTLDVG +LADQI++AL+A+KDVRLVALDF+GAFDKVWWRGLL+HLWAVGVR+KAY+LFESYLSDRALFV
Sbjct:  384 PKNYRPISVLPTLATTFERVLMPQLASFLIEHIPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLSDRALFV 497          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 187 bits (475), Expect = 1.820e-53
Identity = 87/107 (81.31%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    7 PQNYRPVSVLPTLATTFERVLMPQLSAFLLPHIPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYL 327
            P+NYRP+SVLPTLATTFERVLMPQL++FL+ HIP  QF F+PDTGTLDVG +LADQI++AL+A+KDVRLVALDF+GAFDKVWWRGLL+HLWAVGVR+KAY+LFESYL
Sbjct:  384 PKNYRPISVLPTLATTFERVLMPQLASFLIEHIPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYL 490          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A7S3Y8J9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J9_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 3.750e-21
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  193 AKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRALFV 348
            A+KDVRLV LDFKGA DKVWWRGLL+HLWAVGVR+KA+KL +SYLSDRALFV
Sbjct:    1 ARKDVRLVELDFKGACDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFV 52          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A7S3Y8U8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U8_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 4.920e-18
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1
Query:  214 VALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRALFV 348
            VALDFKGAFDKVWWRGLL+HLWAVGVR+KA+KL +SYLSDRALFV
Sbjct:    1 VALDFKGAFDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFV 45          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A821XHH9_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821XHH9_9NEOP)

HSP 1 Score: 79.0 bits (193), Expect = 2.930e-14
Identity = 51/149 (34.23%), Postives = 81/149 (54.36%), Query Frame = 1
Query:    1 TDPQNYRPVSVLPTLATTFERVLMPQLSAFLLPH--IPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRALFVASVMVRSQSMWASSPAYRRAPSGLLFFLTFL 441
            T+P NYRP+S+LPT++   E+++  +L  +L  +  I + Q+ F   + TL   A L   I Q + +KK V  V +D K AFD V    LL  L  +G++ +A KLF+SYLS+R   V     +S  +  +    + +  G L FL ++
Sbjct:  546 TEPGNYRPISILPTISKILEKIIYSRLDTYLQTNNFIFKRQYGFRSKSSTLSATADLVSDIKQNIDSKKMVLGVFIDLKKAFDTVSHNLLLKKLECIGIKDRALKLFKSYLSNRTQIVKIGNAQSSEIPITCGVPQGSILGPLLFLIYI 694          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A6J1N3M6_BICAN (uncharacterized protein LOC112046957 n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1N3M6_BICAN)

HSP 1 Score: 78.6 bits (192), Expect = 3.880e-14
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 PQNYRPVSVLPTLATTFERVLMPQLSAFL--LPHIPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDR 336
            P NYRP+SVLP ++  FE+V+  +L ++L  + ++  +Q+ F   + TL     L  +I   + AKK    + +D K AFD V  + LL  L  +G+  KAYK+FESYL+DR
Sbjct:  522 PSNYRPISVLPVMSKIFEKVIYNRLESYLNSINYLYPKQYGFRSKSNTLSATVDLVTKIKNNIDAKKIALGIFIDLKKAFDTVSHKILLKKLQDIGITDKAYKIFESYLTDR 633          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A8J9YV55_BRALA (SLC22A5 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YV55_BRALA)

HSP 1 Score: 77.0 bits (188), Expect = 1.380e-13
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    4 DPQNYRPVSVLPTLATTFERVLMPQLSAFLLPH--IPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRALFVASVMVRSQSMWASSPAYRRAPSG 417
            +P  YRP+ +L  ++   E  +  QL  +LL +  I + QF F P   T D+  +L+   + AL    +VR +ALD KGAFDKVW  GL S L + G+  K      SYL +R++    V++  QS   ++P     P G
Sbjct:  606 NPAMYRPILLLSNISKVMEPAVQAQLHKYLLQNKLISDRQFGFRPHQSTADILTILSQHWSNALDRGYEVRHIALDIKGAFDKVWHNGLCSKLKSKGISGKLLTWISSYLLNRSM---KVVLSGQSS-TTTPINASVPLG 741          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: UPI001E2701EB (uncharacterized protein K02A2.6-like n=3 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E2701EB)

HSP 1 Score: 75.1 bits (183), Expect = 6.680e-13
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    4 DPQNYRPVSVLPTLATTFERVLMPQLSAFLLPH--IPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDR 336
            DP NYRPVSVLP ++  FER+L  +L+ +L     +  +Q+ F   + TL     L  +I   +  K     + +D K AFD V    LL  L  +G+R +A+K+FESYL +R
Sbjct: 1124 DPNNYRPVSVLPVISKIFERILYKRLNTYLSEKQFLISQQYGFRSKSSTLTAAIDLVTEIRSQIDKKNFALGIFIDLKKAFDTVSHGKLLLKLGNIGIRGRAFKIFESYLQNR 1236          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A8J9YR33_BRALA (Hypp5830 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YR33_BRALA)

HSP 1 Score: 73.2 bits (178), Expect = 2.980e-12
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    4 DPQNYRPVSVLPTLATTFERVLMPQLSAFLLPH--IPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRAL 342
            DP NYRP+S+L  ++   E ++   L   +  +  I ++QF F     T D    +   +  A   +++ RL+ LD   AFD+VW RGL++ L A+GV     K FE+YL+DR L
Sbjct:  406 DPNNYRPISLLCIISKVMEAIINKALWQHIDKNSLISDKQFGFRAGHSTADALTYVTQHLHDAKDKRQESRLICLDISRAFDRVWHRGLIAKLKAIGVDGHVLKWFENYLADREL 520          
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Match: A0A2P2HZB6_9CRUS (Pol-like protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2HZB6_9CRUS)

HSP 1 Score: 71.2 bits (173), Expect = 1.370e-11
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   13 NYRPVSVLPTLATTFERVLMPQLSAFLLPH--IPEEQFVFIPDTGTLDVGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAKAYKLFESYLSDRALFV 348
            +YRP+++L T+   FE+++  +L  FL  +  +   Q  F     T+DV   L + I Q++ A +    V LD KGA+DKVW RGLL  L  +G+    +K  ++YLS+R  FV
Sbjct:  518 SYRPITLLSTIGKLFEKMICRRLDFFLEKNRRLGSFQTGFRKGLSTIDVLLRLQNNIRQSIDASRYCIAVYLDLKGAYDKVWHRGLLYKLSKLGIFGNMFKWIKAYLSERKFFV 631          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1219.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8N4_HETAK2.770e-5782.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8Z6_HETAK1.820e-5381.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8J9_HETAK3.750e-2184.62Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y8U8_HETAK4.920e-1888.89Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A821XHH9_9NEOP2.930e-1434.23Hypothetical protein n=1 Tax=Pieris macdunnoughi T... [more]
A0A6J1N3M6_BICAN3.880e-1439.29uncharacterized protein LOC112046957 n=1 Tax=Bicyc... [more]
A0A8J9YV55_BRALA1.380e-1335.00SLC22A5 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
UPI001E2701EB6.680e-1338.05uncharacterized protein K02A2.6-like n=3 Tax=Melit... [more]
A0A8J9YR33_BRALA2.980e-1235.65Hypp5830 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A2P2HZB6_9CRUS1.370e-1136.84Pol-like protein (Fragment) n=1 Tax=Hirondellea gi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1219contigH-akashiwo_Contig1219:27122..27565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7029.ACYPI48020-PA
Model size444
Max annot lvl7029.ACYPI48020-PA|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.67e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size444
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.5369666-CDS-H-akashiwo_Contig1219:27121..275651681387124.5369666-CDS-H-akashiwo_Contig1219:27121..27565Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1219 27122..27565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1219.3.1prot_H-akashiwo_Contig1219.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1219 27122..27565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1219.3.1

>prot_H-akashiwo_Contig1219.3.1 ID=prot_H-akashiwo_Contig1219.3.1|Name=mRNA_H-akashiwo_Contig1219.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=148bp
TDPQNYRPVSVLPTLATTFERVLMPQLSAFLLPHIPEEQFVFIPDTGTLD
VGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWRGLLSHLWAVGVRAK
AYKLFESYLSDRALFVASVMVRSQSMWASSPAYRRAPSGLLFFLTFL*
back to top

mRNA from alignment at H-akashiwo_Contig1219:27122..27565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1219.3.1 ID=mRNA_H-akashiwo_Contig1219.3.1|Name=mRNA_H-akashiwo_Contig1219.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig1219:27122..27565- (Heterosigma akashiwo CCMP452)
ACAGACCCTCAAAACTATCGGCCTGTTTCAGTGCTGCCAACTCTGGCCAC TACATTTGAGAGGGTTCTCATGCCTCAACTGAGTGCGTTTCTGCTTCCAC ACATCCCAGAAGAACAGTTTGTGTTCATTCCTGACACAGGCACTCTGGAT GTGGGTGCCGTACTTGCAGACCAGATAGCTCAAGCACTGCAGGCTAAAAA AGATGTGCGGCTAGTTGCCCTTGATTTCAAGGGGGCTTTCGACAAGGTGT GGTGGCGTGGGCTTCTCTCACATCTTTGGGCTGTAGGGGTACGCGCCAAG GCCTACAAGCTCTTTGAGAGCTATCTCTCCGACAGGGCGCTCTTTGTTGC CTCTGTAATGGTGAGATCTCAGAGCATGTGGGCATCAAGTCCGGCGTACC GCAGGGCGCCATCTGGTCTTCTCTTCTTTTTGACCTTTTTGTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1219:27122..27565-

>mRNA_H-akashiwo_Contig1219.3.1 ID=mRNA_H-akashiwo_Contig1219.3.1|Name=mRNA_H-akashiwo_Contig1219.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig1219:27122..27565- (Heterosigma akashiwo CCMP452)
ACAGACCCTCAAAACTATCGGCCTGTTTCAGTGCTGCCAACTCTGGCCAC
TACATTTGAGAGGGTTCTCATGCCTCAACTGAGTGCGTTTCTGCTTCCAC
ACATCCCAGAAGAACAGTTTGTGTTCATTCCTGACACAGGCACTCTGGAT
GTGGGTGCCGTACTTGCAGACCAGATAGCTCAAGCACTGCAGGCTAAAAA
AGATGTGCGGCTAGTTGCCCTTGATTTCAAGGGGGCTTTCGACAAGGTGT
GGTGGCGTGGGCTTCTCTCACATCTTTGGGCTGTAGGGGTACGCGCCAAG
GCCTACAAGCTCTTTGAGAGCTATCTCTCCGACAGGGCGCTCTTTGTTGC
CTCTGTAATGGTGAGATCTCAGAGCATGTGGGCATCAAGTCCGGCGTACC
GCAGGGCGCCATCTGGTCTTCTCTTCTTTTTGACCTTTTTGTGA
back to top