mRNA_H-akashiwo_Contig1219.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1219.2.1
Unique NamemRNA_H-akashiwo_Contig1219.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A7S3UWJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWJ0_HETAK)

HSP 1 Score: 145 bits (365), Expect = 8.460e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG
Sbjct:   73 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 142
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853F0D0_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F0D0_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 9.700e-22
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVGGSDGTL Y++N G  ++P++E  T  ++PFDGIDVG YS P   D D DGDLDLV+G
Sbjct:   49 DIDGDGDLDLVVGGSDGTLKYYQNTGITSNPTYEVKTGDSNPFDGIDVGDYSAPTLADIDGDGDLDLVMG 118
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: F0XZM5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZM5_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 8.630e-20
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG   GTL Y++N GS  SPS+E +T   SPFDGIDVG +S PAF D D DGDLDLVVG
Sbjct:  100 DLDGDGDLDLVVGEKYGTLYYYENVGSAASPSYEAVTGTASPFDGIDVGLHSAPAFADVDGDGDLDLVVG 169
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853F349_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F349_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 9.690e-20
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG  +GTL Y++N G+ +SP++E  T   +PF+GIDVG YS P   D D DGDLDLVVG
Sbjct:   11 DIDGDGDLDLVVGEKNGTLKYYQNTGTTSSPAYEAKTGDDNPFNGIDVGYYSTPTLADIDGDGDLDLVVG 80
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853EZW7_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853EZW7_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 1.890e-19
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG S+GTL Y++N G+ +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG
Sbjct:  118 DIDGDGDLDLVVGESNGTLKYYQNTGTTSSPAYEAKTGGNNPFNGIDVGGYSTPNLADIDGDGDLDLVVG 187
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853EY73_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853EY73_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 2.540e-19
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG SDGTL Y++N G+ ++P++E  T  ++PF+GIDVG YS P  +D D DGDLDLVVG
Sbjct:  456 DIDGDGDLDLVVGESDGTLKYYQNTGTTSNPAYEAKTGDSNPFNGIDVGDYSAPILVDIDGDGDLDLVVG 525
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853F1T4_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F1T4_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 2.580e-19
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG +DGTL Y++N G+ +SP++E  T G +PF+GIDVG YS P   D D DGDLDLVVG
Sbjct:  422 DIDGDGDLDLVVGENDGTLKYYQNTGTTSSPAYEAKTGGNNPFNGIDVGGYSTPNLADIDGDGDLDLVVG 491
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853F054_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F054_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 4.850e-19
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG SDGTL Y++N G+ ++P++E  T   +PF+GIDVG+YS P   D D DGDLDLVVG
Sbjct:  566 DIDGDGDLDLVVGESDGTLKYYQNTGTTSNPAYEAKTGDDNPFNGIDVGRYSAPVLADIDGDGDLDLVVG 635
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853F6S3_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F6S3_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 1.240e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG SDGTL Y++N G+ ++P++E  T  ++PF+GIDVG YS P   D D DGDLDLVVG
Sbjct:  914 DIDGDGDLDLVVGESDGTLKYYQNTGTTSNPAYEAKTGDSNPFNGIDVGDYSKPTLADIDGDGDLDLVVG 983
[Close]
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Match: A0A853F465_9GAMM (VCBS repeat-containing protein n=1 Tax=Candidatus Thiodubiliella endoseptemdiera TaxID=2738886 RepID=A0A853F465_9GAMM)

HSP 1 Score: 87.4 bits (215), Expect = 1.680e-18
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGKYSVPAFIDYDDDGDLDLVVG 210
            D+D DGDLD VVG SDG L Y++N G+ ++P++E  T  ++PFDGIDVG YS P   D D DGDLDLVVG
Sbjct:  458 DIDGDGDLDLVVGKSDGILKYYQNTGTTSNPAYEAKTGDSNPFDGIDVGDYSSPTLADIDGDGDLDLVVG 527
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1219.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UWJ0_HETAK8.460e-43100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A853F0D0_9GAMM9.700e-2261.43VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
F0XZM5_AURAN8.630e-2065.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A853F349_9GAMM9.690e-2058.57VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853EZW7_9GAMM1.890e-1961.43VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853EY73_9GAMM2.540e-1960.00VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853F1T4_9GAMM2.580e-1961.43VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853F054_9GAMM4.850e-1960.00VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853F6S3_9GAMM1.240e-1860.00VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]
A0A853F465_9GAMM1.680e-1860.00VCBS repeat-containing protein n=1 Tax=Candidatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1219contigH-akashiwo_Contig1219:17919..18128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009033457.1
PFAMsEphrin_rec_like
Model size210
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.74e-19
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
Cds size210
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.50007-CDS-H-akashiwo_Contig1219:17918..181281681387124.50007-CDS-H-akashiwo_Contig1219:17918..18128Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1219 17919..18128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1219.2.1prot_H-akashiwo_Contig1219.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1219 17919..18128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1219.2.1

>prot_H-akashiwo_Contig1219.2.1 ID=prot_H-akashiwo_Contig1219.2.1|Name=mRNA_H-akashiwo_Contig1219.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
DVDDDGDLDWVVGGSDGTLSYFKNEGSKTSPSFEEITDGTSPFDGIDVGK
YSVPAFIDYDDDGDLDLVVG
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mRNA from alignment at H-akashiwo_Contig1219:17919..18128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1219.2.1 ID=mRNA_H-akashiwo_Contig1219.2.1|Name=mRNA_H-akashiwo_Contig1219.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig1219:17919..18128- (Heterosigma akashiwo CCMP452)
GATGTAGATGATGATGGTGATCTTGACTGGGTTGTTGGTGGCTCCGATGG
CACCCTTTCGTACTTTAAGAACGAAGGAAGCAAGACTAGTCCTTCTTTTG
AGGAAATCACCGATGGTACTAGCCCATTTGATGGCATTGATGTTGGCAAA
TACAGTGTACCTGCTTTCATTGATTACGATGATGATGGTGATCTTGATCT
GGTGGTGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1219:17919..18128-

>mRNA_H-akashiwo_Contig1219.2.1 ID=mRNA_H-akashiwo_Contig1219.2.1|Name=mRNA_H-akashiwo_Contig1219.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig1219:17919..18128- (Heterosigma akashiwo CCMP452)
GATGTAGATGATGATGGTGATCTTGACTGGGTTGTTGGTGGCTCCGATGG
CACCCTTTCGTACTTTAAGAACGAAGGAAGCAAGACTAGTCCTTCTTTTG
AGGAAATCACCGATGGTACTAGCCCATTTGATGGCATTGATGTTGGCAAA
TACAGTGTACCTGCTTTCATTGATTACGATGATGATGGTGATCTTGATCT
GGTGGTGGGC
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