mRNA_H-akashiwo_Contig1218.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1218.13.1
Unique NamemRNA_H-akashiwo_Contig1218.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: K0RET7_THAOC (Mitogen-activated protein kinase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RET7_THAOC)

HSP 1 Score: 64.7 bits (156), Expect = 5.170e-10
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   16 YLFRDIKPANILLNEDCSLKVCDFGLARVVPARHLDPRAPAPAAPP 153
            ++ RD+KPANILLNEDCSLK+CDFGLAR++ + +L P + +P+  P
Sbjct:  172 FIHRDLKPANILLNEDCSLKICDFGLARIIQSSNLVPPSQSPSLRP 217
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A1Z5KEI1_FISSO (Mitogen-activated protein kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEI1_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 4.690e-9
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   13 SYLFRDIKPANILLNEDCSLKVCDFGLARVVPARH 117
            S + RD+KPANILLNEDCSLK+CDFGLAR+V + H
Sbjct:  217 SVIHRDLKPANILLNEDCSLKICDFGLARMVSSEH 251
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: I2CQW2_NANGC (Mitogen-activated protein kinase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQW2_NANGC)

HSP 1 Score: 60.8 bits (146), Expect = 1.210e-8
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   25 RDIKPANILLNEDCSLKVCDFGLARVVPARHLDPRAPAP 141
            RD+KPANILLNEDCSLK+CDFGLARVV   H    APAP
Sbjct:  231 RDLKPANILLNEDCSLKLCDFGLARVV-NHHCVRAAPAP 268
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A4D9CMP4_9STRA (Mitogen-activated protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMP4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-8
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   25 RDIKPANILLNEDCSLKVCDFGLARVVPARHLDPRAPAP 141
            RD+KPANILLNEDCSLK+CDFGLARVV   H    APAP
Sbjct:  517 RDLKPANILLNEDCSLKLCDFGLARVV-NHHCVRAAPAP 554
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A7S1ZXK6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZXK6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.220e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   13 SYLFRDIKPANILLNEDCSLKVCDFGLARVV 105
            S + RD+KPANILLNEDCSLK+CDFGLAR+V
Sbjct:  158 SVIHRDLKPANILLNEDCSLKICDFGLARIV 188
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A7S2Y3N5_9STRA (Mitogen-activated protein kinase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y3N5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.270e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   13 SYLFRDIKPANILLNEDCSLKVCDFGLARVV 105
            S + RD+KPANILLNEDCSLK+CDFGLAR+V
Sbjct:  431 SVIHRDLKPANILLNEDCSLKICDFGLARIV 461
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A7S3PXS5_9STRA (Mitogen-activated protein kinase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXS5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.280e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   13 SYLFRDIKPANILLNEDCSLKVCDFGLARVV 105
            S + RD+KPANILLNEDCSLK+CDFGLAR+V
Sbjct:  378 SVIHRDLKPANILLNEDCSLKICDFGLARIV 408
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A7S4RF34_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RF34_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.290e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   13 SYLFRDIKPANILLNEDCSLKVCDFGLARVV 105
            S + RD+KPANILLNEDCSLK+CDFGLAR+V
Sbjct:  520 SVIHRDLKPANILLNEDCSLKICDFGLARIV 550
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A7S4REH2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4REH2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.330e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   13 SYLFRDIKPANILLNEDCSLKVCDFGLARVV 105
            S + RD+KPANILLNEDCSLK+CDFGLAR+V
Sbjct:  520 SVIHRDLKPANILLNEDCSLKICDFGLARIV 550
[Close]
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Match: A0A7S1G0L1_9STRA (Mitogen-activated protein kinase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0L1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.360e-8
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:   25 RDIKPANILLNEDCSLKVCDFGLARVV 105
            RD+KPANILLNEDC+LK+CDFGLARVV
Sbjct:  149 RDLKPANILLNEDCTLKICDFGLARVV 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1218.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0RET7_THAOC5.170e-1058.70Mitogen-activated protein kinase (Fragment) n=1 Ta... [more]
A0A1Z5KEI1_FISSO4.690e-974.29Mitogen-activated protein kinase n=2 Tax=Fistulife... [more]
I2CQW2_NANGC1.210e-876.92Mitogen-activated protein kinase (Fragment) n=1 Ta... [more]
A0A4D9CMP4_9STRA1.220e-876.92Mitogen-activated protein kinase n=1 Tax=Nannochlo... [more]
A0A7S1ZXK6_9STRA2.220e-880.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2Y3N5_9STRA2.270e-880.65Mitogen-activated protein kinase (Fragment) n=1 Ta... [more]
A0A7S3PXS5_9STRA2.280e-880.65Mitogen-activated protein kinase n=1 Tax=Chaetocer... [more]
A0A7S4RF34_9STRA2.290e-880.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4REH2_9STRA2.330e-880.65Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1G0L1_9STRA4.360e-888.89Mitogen-activated protein kinase (Fragment) n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1218contigH-akashiwo_Contig1218:352276..354484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0RET7
PFAMsPkinase
Model size305
Max annot lvl2836|Bacillariophyta
KEGG koko:K04371
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.48e-11
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota,2XA9W@2836|Bacillariophyta
EC2.7.11.24
DescriptionSerine/Threonine protein kinases, catalytic domain
Cds size303
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387124.0555258-CDS-H-akashiwo_Contig1218:352275..3523271681387124.0555258-CDS-H-akashiwo_Contig1218:352275..352327Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1218 352276..352327 -
1681387124.065992-CDS-H-akashiwo_Contig1218:353429..3536051681387124.065992-CDS-H-akashiwo_Contig1218:353429..353605Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1218 353430..353605 -
1681387124.0755937-CDS-H-akashiwo_Contig1218:354409..3544841681387124.0755937-CDS-H-akashiwo_Contig1218:354409..354484Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1218 354410..354484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1218.13.1prot_H-akashiwo_Contig1218.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1218 352276..354484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1218.13.1

>prot_H-akashiwo_Contig1218.13.1 ID=prot_H-akashiwo_Contig1218.13.1|Name=mRNA_H-akashiwo_Contig1218.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
MLCLSYLFRDIKPANILLNEDCSLKVCDFGLARVVPARHLDPRAPAPAAP
PSARRRAPRRPAARACRPPGPPPAAAAAPAPSAEPAARGAAAAASLPPPA
P
back to top

mRNA from alignment at H-akashiwo_Contig1218:352276..354484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1218.13.1 ID=mRNA_H-akashiwo_Contig1218.13.1|Name=mRNA_H-akashiwo_Contig1218.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2209bp|location=Sequence derived from alignment at H-akashiwo_Contig1218:352276..354484- (Heterosigma akashiwo CCMP452)
ATGTTGTGCTTGTCCTATTTGTTCAGAGACATAAAACCGGCAAACATTCT
ACTGAATGAAGACTGCTCTTTGAAGGTAATTTTGCCTAGTGTGCTTGAGA
CTTTGACCTGCGATTGCTTTTACTCTTCAAATTTCATTTTGGACATATTT
GCTGTGAAGAGGTATATATATAAGCCTTTTGATCTGAAGCACAACCTTTT
TGTAAAAAAAAAGAAGAAGAACCACTTGTACTTCTCAAATTTCATTTTGG
ATACATTAGATGCGAAAGGGTCAGATCATGGTGAGCAGCCTTTTGAAGTG
AAGCACAAACCTTTTTGGTAAAAAAAGAACCACAGTTCAAAGCCTCAAGT
AACCTATCGTAAACTGTTTAAGTCTTCAAAAAAGGATCACTTTTAGTCTC
ACCCTTCAACTAAACTGTGGTTTTGCCTCTTATTAAGGTTGGGATCATAA
GAAGCTTTTTGATACCCCCAACAGGCAATAACCACGGCGAGGCAAAAGGC
ACTTGCTCCCCCCCCCTCCCCCCGCCGCGCTCGCGGAGGCGGTGCCAAAA
CGGTCCGACCTCCGACCCCTCCCTTTTTCCCTATCGGTGCCCGGGGCGGT
GCCCCGCCCGCGGCCCCCCCTTCCACGCGGCGCCCGCCGCCGCCGGAACG
AGCGTCAAGGCCCCGCGCCTTGCGATGATGATACACGCACGAGTTAAAAC
GAGAGTAGATGGTGGTGGATGACAACATTATTTACTGTTTTGAAACCGTT
CCCGGCATGGTGGAGAACACTGTTGTTCTGAAATCCTTCCCGGCACCTTT
TCCCCGAGCGGTCGCCCGCCTTCTTCTTCTTCTTCCTCCTCCGCCAGGTC
TCCCCGCCTTCTTCCTCCTCCCCCGCCAGGTCTGCGACTTCGGCCTGGCC
CGCGTGGTCCCCGCCCGGCACCTGGACCCCCGCGCCCCGGCACCCGCCGC
GCCCCCCAGCGCCCGCCGCCGCGCCCCCCGCCGCCCCGCCGCCCGCGCCT
GCCGCCCGCCCGGCCCGCCGCCCGCCGCCGCCGCCGCCCCCGCCCCCTCT
GCGGAGTGAGCGGCCGCGGTGGTTGGGGTATATGCGATGTTGTTACATAG
TGATTTCTTTTTGCGCGTGCGCCTGGTCGGTTGGTGCTCGTTCGAGAAGT
GTTGGACGGAGCGTGTCGAGTGGCATGACGCACAGCAACGGTCTACTGTC
ACCAGAGCGGTAGCGTTACCCCTTGTTGCCAGCCACGGGGAACCTGGTGG
TGTTGTTTGGCTAACATCTTGGTGGAAGGGACATGGCCGATAGCACGGAG
AGGGGGCGACAACAAGTCATCGACCAGAGACGGGAATGCTCATGATGCTT
TTCTACTTCTTCCTCCTCCATGTTTGATTGTGCCTATACCTCCTTCTATT
TTTCTTGTGGTTATGTGTTGCACATTGAAGTCCAGACACATGGTATTGAC
GTTAGTGTGCAGAGGGTCCCATCATTATCATGGAAGGCTACAATGCATTG
CCATTGTCAGGCCAGCATTTTGTTGAGAACATCATCGTCGAAGTTTGATT
ATAATCGAAGTTTAGTAGTAAGAATAATATAAGGAAAATGCACATAAGTA
TATATAATTTTACTGAAAATGTTGTGATGAGTGTGTGTGTTGAGGTTTTA
TGGTGCTGGTGTTTGATGGTGCTTGCTCAGAGGGTGTGTTGGGCTGCTGG
TGCAGGGGTATCATCTGCAGAAAAAGTTGTTGCTGGGCTCATCACAACCG
CACACCTTGTGATGTCGCTCTGAGTGGGCTGTTGCTGCAATGATATGCTG
CTGCTGCTGCTGCGTACGCTGTCGCGCAAACCCTTGTTTTGTTTTTTGAA
AGATGTTTGTCTGTCATTTAATATAACTAGTATTATTCACAGTGCCCTCA
TTTCCATTCTTGTTGGCATGTCCTGTGATTTGGATACCTTGCCCCCCTTT
CACGATTGCAGTGGTTTTCGTTCAAAGAAGTCGAGATGCGGTGCTATAGA
GCACTGGAAGTCTGCAGCCGCTGCCAGATCGGCCAGGCAGCAGCCTCTCT
CTTTCGCGTTCCGGTTGTCGCTGCGTCACGCAGAGCCGGCCGCACCATCC
GCCAGTGCCCGGACCCCCCTCTCTCCCCGGCGCACTTCCTTCCCGCGCGC
TGCACAGACCCGCGGCCCGCGGGGCGGCGGCGGCGGCGTCGCTACCTCCA
CCCGCACCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1218:352276..354484-

>mRNA_H-akashiwo_Contig1218.13.1 ID=mRNA_H-akashiwo_Contig1218.13.1|Name=mRNA_H-akashiwo_Contig1218.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig1218:352276..354484- (Heterosigma akashiwo CCMP452)
ATGTTGTGCTTGTCCTATTTGTTCAGAGACATAAAACCGGCAAACATTCT
ACTGAATGAAGACTGCTCTTTGAAGGTCTGCGACTTCGGCCTGGCCCGCG
TGGTCCCCGCCCGGCACCTGGACCCCCGCGCCCCGGCACCCGCCGCGCCC
CCCAGCGCCCGCCGCCGCGCCCCCCGCCGCCCCGCCGCCCGCGCCTGCCG
CCCGCCCGGCCCGCCGCCCGCCGCCGCCGCCGCCCCCGCCCCCTCTGCGG
AACCCGCGGCCCGCGGGGCGGCGGCGGCGGCGTCGCTACCTCCACCCGCA
CCG
back to top