mRNA_H-akashiwo_Contig1216.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1216.2.1
Unique NamemRNA_H-akashiwo_Contig1216.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A1Y1HZL1_KLENI (Hemerythrin domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HZL1_KLENI)

HSP 1 Score: 161 bits (408), Expect = 3.760e-45
Identity = 97/250 (38.80%), Postives = 142/250 (56.80%), Query Frame = 1
Query:   28 PSSSVIRRVSKWQDEVMLIPHEAFRMYMGWME--VAVTSFHPTLTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDMESVFVDA-----EGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEK-LRSEMPAPIRFLNGRFWDRAWRKKSLGAIRSIIADEDPE 753
            P+S VI  V+ W D  +L PHE  R  +  ME  + V  F  T    AWK   FF+WYNDWFYP +  HHD EE +FFPA++  C   P+ + +ADHEELIR +++IR ME  F        E   ++     +EL+Q+V      + EH A EE+    ++ E  T K     L+ QII+  GLSGNA + P ++++++ WAG + VEK  R+ +PAPI+FL   FW   + KK++  +  +  + DP+
Sbjct:   13 PTSIVIPVVTHWSDASLLTPHEPIRNDLARMERLLQVPFFDGT---QAWKVKAFFKWYNDWFYPNVHHHHDIEETIFFPAVKARCDVIPE-RMAADHEELIRMLDEIRAMELRFKPLKRGAPEPSLSERRLVAEELRQKVAHLATELREHIAEEERFFTPVIKEKFT-KEEHHQLVDQIIKAAGLSGNAKMGPWVVHSMYKWAGKDYVEKEFRAGIPAPIKFLFDHFWYPKYLKKAVRGLDVLELEADPK 257          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A813GJC9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GJC9_POLGL)

HSP 1 Score: 127 bits (320), Expect = 1.770e-31
Identity = 82/241 (34.02%), Postives = 131/241 (54.36%), Query Frame = 1
Query:   31 SSSVIRRVSKWQDEVMLIPHEAFRMYMGWMEVAVTSFHPTLTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDMESV-FVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSEM-PAPIRFLNGRFWDRAWRKKSLGAIRSIIADED 747
            +S V+ R   WQ+E +L+PHE  R  MG +  AV          AWK      WY D+FY  +  HH+ EE+++FP L+   G  P AK +ADH EL+R M+++RDM +   +   G+  ++ A V+E   +V  F + M++H A EE+++ ++L E G       A+++QI+    L      LP +L+    WAG+E  E   +E+ P PIR L   FW   ++++ LG + S+  + D
Sbjct:   92 TSRVLPRPIGWQEEGILLPHEGIRFMMGELSEAVRVMDAKA---AWKWENLATWYQDYFYDVVHHHHEGEEQIYFPWLQ-TRGTIP-AKIAADHPELMRAMDELRDMLATGALKPAGERAELLAKVRE---RVAAFVEDMHQHLAEEEELIPKLLREGGFTHEEEGAIVEQIMASLSLDTLKKTLPVVLHGFKLWAGEERAEAFVAELLPLPIRLLYQNFWSVDFQQRHLGLVASLPEEVD 324          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A813FLF0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FLF0_POLGL)

HSP 1 Score: 129 bits (325), Expect = 5.260e-31
Identity = 85/241 (35.27%), Postives = 132/241 (54.77%), Query Frame = 1
Query:   31 SSSVIRRVSKWQDEVMLIPHEAFRMYMGWMEVAVTSFHPTLTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDM-ESVFVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSE-MPAPIRFLNGRFWDRAWRKKSLGAIRSIIADED 747
            +S V+ R   WQ+E +L+PHE  R  MG +  AV          AWK      WY D+FY  +     +EE ++FP L+   G  P AK SADH EL+R M+++RDM  S  +   G+  ++ A   +L+++V  F + M++H A EE+++ ++L E G  +    A + QII+  GL GN   LP +L+    WAG+E  E   +E +P PIR L   FW   ++++ LG + S+  + D
Sbjct:  285 TSRVLPRPVGWQEEGILLPHEGIRFLMGELSEAVRVMDAKA---AWKWENLATWYQDYFYDVVHXXXXSEELIYFPWLQ-TKGTIP-AKISADHPELMRAMDELRDMLASGALKPAGERAELLA---KLRERVAAFVEDMHQHLAEEEEVIPKLLREGGFTQEEEGACVGQIIESLGLDGNKKSLPVMLHGFKLWAGEERAEAFVAEHLPPPIRLLYQNFWSADFQQRHLGLVASLPEEVD 517          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A813KYT6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KYT6_POLGL)

HSP 1 Score: 128 bits (321), Expect = 5.990e-30
Identity = 80/240 (33.33%), Postives = 129/240 (53.75%), Query Frame = 1
Query:   31 SSSVIRRVSKWQDEVMLIPHEAFRMYMGWMEVAVTSFHPTLTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDM-ESVFVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSEMPAPIRFLNGRFWDRAWRKKSLGAIRSIIADED 747
            +S V+     WQ+E +L+PHE  R  MG +  A           AWK      WY D+FY  +    ++EE+++FP L+   G  P AK SADH EL+R M+++RDM  S  +   GD  ++ A   +L+++V  F + M++H A EE+++ ++L E G  +    A + QI+Q   +      LP +L+    WAG+E  E   +E+P PIR L   FW   ++++ LG + S+  + D
Sbjct: 1186 TSRVLPHPVGWQEEGILLPHEGIRFLMGELSEAA----------AWKWENLATWYQDYFYDVVHHXXESEEQIYFPWLQ-TRGAIP-AKISADHPELMRAMDELRDMLASGALKPAGDRAELLA---KLRERVAAFVEDMHQHLAEEEELIPKLLREGGFTQEEEGACVGQIMQSLSMDALKKSLPAMLHGFKLWAGEERAEAFVAELPPPIRLLYQNFWSADFQQRHLGLVASLPEEVD 1410          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A813F961_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F961_POLGL)

HSP 1 Score: 123 bits (308), Expect = 8.370e-30
Identity = 84/241 (34.85%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   31 SSSVIRRVSKWQDEVMLIPHEAFRMYMGWMEVAVTSFHPTLTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDM-ESVFVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSE-MPAPIRFLNGRFWDRAWRKKSLGAIRSIIADED 747
            +S V+     WQ+E +L+PHE  R  M  +  AV       T   W+      WY D+FY  +  H+D+EE + FP L+   G  P AK  ADH EL+R M+++RDM  S      G+  ++ A   +L+++V  F + M++H A EE+++ ++L E G  +    A + QII+  GL GN   LP +L+ L  WAG+E  E   +E +P PIR L   FW   ++ + LG + S+  + D
Sbjct:   83 TSRVLPHPVGWQEEGILLPHEGIRFLMEELSEAVRVMDAKAT-RKWEN--LSTWYQDYFYDVVHHHYDSEELIDFPWLQ-TKGAIP-AKILADHPELMRTMDELRDMLASGSFKPAGERAELLA---KLRERVAAFVEDMHQHLAEEEEVIPKLLGEGGFTQEKEGAAVGQIIESLGLDGNKKSLPVMLHGLKLWAGEERAEAFVAEHLPLPIRLLYRTFWSADFQHRHLGLVASLPEEVD 315          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A813DTW5_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DTW5_POLGL)

HSP 1 Score: 119 bits (299), Expect = 1.940e-28
Identity = 83/238 (34.87%), Postives = 125/238 (52.52%), Query Frame = 1
Query:   40 VIRRVSKWQDEVMLIPHEAFRMYMGWMEVAVTSFHPTLTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDM-ESVFVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSE-MPAPIRFLNGRFWDRAWRKKSLGAIRSIIADED 747
            V+ R   WQ+E +L PHE  R  MG +  AV      +   AWK      WY D+FY  +         +FFP L+   G  P AK SADH EL+R M+++RDM  S  +   G+  ++ A    L+++V  F + M++H A EE+++ ++L E    +     +  QII+  GL GN   LP +L+ L  WAG+E  E   +E +P PIR L   FW   ++++ LG + S+ A  D
Sbjct:   93 VLPRPVGWQEEGILFPHEGLRFLMGELSEAVRVMDAKV---AWKWENLATWYQDYFYDVVHXXXXXXXVIFFPWLQ-TRGAIP-AKISADHPELMRTMDELRDMFASGALKPAGERAELLAR---LRERVAAFVEDMHQHLAEEEEVIPKLLREGNFTQEEEAPVTGQIIESLGLDGNKKSLPVMLHGLKLWAGEERAEAFVAEHLPLPIRLLYQHFWKPDFQERHLGLLASLPAGVD 322          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A7R9WC07_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WC07_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.110e-22
Identity = 66/202 (32.67%), Postives = 104/202 (51.49%), Query Frame = 1
Query:   61 WQDEVMLIPHEAFRMYMGWMEVAVTSFHPTLTG-HAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDMESVFVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSEMPAPI 663
            W D  +LIPHEA R  M  ME +V +   +L    AWK   F +WY ++FY ++ +HHD EEEL+FP +     + P+ K +  H EL+  M+ I+      +  + D     + +  L++ V DF   M  H   EE++V  +L  + T +   + ++Q+I+Q+GG+      LP IL A+  WA  E        MP P+
Sbjct:   69 WADIGLLIPHEAIRREMTGMERSVDAMPESLDATSAWKGKYFARWYIEYFYQSVHDHHDNEEELYFPWIA-TKADLPE-KLTQSHVELVEAMDVIKGHCETILKKDDDGYDCASEIAGLKKSVPDFVSNMRAHLKEEEEVVPTLLRTHFTHQEE-EEVVQKILQKGGMDEVRAFLPSILLAMKEWAAPEFYNDFVGSMPPPV 267          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: A0A813FGL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FGL6_POLGL)

HSP 1 Score: 98.6 bits (244), Expect = 1.450e-21
Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 1
Query:  163 AWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKSSADHEELIRRMNDIRDME-SVFVDAEGDFTKITAAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEKLRSEM------PAPI-RFLNGR 681
            AWK      WY D+FY  +  HHD+EE+++FP L+   G  P AK SADH EL+R M+++RDM  S  +   G+  ++ A   +L+++V  F + +++H A EE+++ ++L E G  +    A + QII+  GL GN   LP +L+    WA +E  E   +E       PAP+ + L+GR
Sbjct:   16 AWKWENLATWYQDYFYDVVHHHHDSEEQIYFPWLQ-TKGAIP-AKISADHPELMRAMDELRDMPASGALKPAGERAELLA---KLRERVAAFVEDIHQHLAEEEELIPKLLKEGGFTQEEEGARVGQIIESLGLDGNKKSLPVMLHGFKLWAVEERAEAFVAEHLPPPPHPAPLPKLLDGR 191          
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Match: X6MFD1_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MFD1_RETFI)

HSP 1 Score: 75.5 bits (184), Expect = 2.760e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  397 AAVQELQQQVKDFRKLMNEHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYALHSWAGDEGVEK-LRSEMPAPIRFLNGRFWDRAWR 702
            A + EL +   +F + + +H + EE+    +L E        D ++QQII+  GL GNAL LP +LYA+HSWAG E ++K +   +P PI++LN   W   WR
Sbjct:   25 AFIDELVRNFDEFLRDLEDHLSEEERFTPGLLEEGKFTLQEHDQIVQQIIRDQGLGGNALSLPLMLYAMHSWAGVEDLDKYMMPNIPGPIKYLNKNSWFPKWR 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1216.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A1Y1HZL1_KLENI3.760e-4538.80Hemerythrin domain-containing protein n=1 Tax=Kleb... [more]
A0A813GJC9_POLGL1.770e-3134.02Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813FLF0_POLGL5.260e-3135.27Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813KYT6_POLGL5.990e-3033.33Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813F961_POLGL8.370e-3034.85Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A813DTW5_POLGL1.940e-2834.87Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7R9WC07_9STRA1.110e-2232.67Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A813FGL6_POLGL1.450e-2136.46Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
X6MFD1_RETFI2.760e-1338.83Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1216contigH-akashiwo_Contig1216:210181..210933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog235985.BBPN01000001_gene1345
PFAMsHemerythrin
Model size753
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.65e-07
EggNOG OGsCOG3945@1|root,COG3945@2|Bacteria,2IIV6@201174|Actinobacteria,2NIP3@228398|Streptacidiphilus
DescriptionHemerythrin HHE cation binding domain
Cds size753
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387123.9852836-CDS-H-akashiwo_Contig1216:210180..2109331681387123.9852836-CDS-H-akashiwo_Contig1216:210180..210933Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1216 210181..210933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1216.2.1prot_H-akashiwo_Contig1216.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1216 210181..210933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1216.2.1

>prot_H-akashiwo_Contig1216.2.1 ID=prot_H-akashiwo_Contig1216.2.1|Name=mRNA_H-akashiwo_Contig1216.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=251bp
MVGFPPSAPPSSSVIRRVSKWQDEVMLIPHEAFRMYMGWMEVAVTSFHPT
LTGHAWKPAVFFQWYNDWFYPALIEHHDTEEELFFPALEEICGEFPKAKS
SADHEELIRRMNDIRDMESVFVDAEGDFTKITAAVQELQQQVKDFRKLMN
EHFAWEEKIVLQMLLENGTPKATVDALIQQIIQRGGLSGNALLLPGILYA
LHSWAGDEGVEKLRSEMPAPIRFLNGRFWDRAWRKKSLGAIRSIIADEDP
E
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mRNA from alignment at H-akashiwo_Contig1216:210181..210933-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1216.2.1 ID=mRNA_H-akashiwo_Contig1216.2.1|Name=mRNA_H-akashiwo_Contig1216.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=753bp|location=Sequence derived from alignment at H-akashiwo_Contig1216:210181..210933- (Heterosigma akashiwo CCMP452)
ATGGTCGGTTTTCCTCCATCAGCCCCGCCTTCCTCCAGTGTAATCAGGCG AGTGTCAAAGTGGCAAGATGAAGTTATGCTCATCCCGCACGAAGCATTCC GTATGTACATGGGGTGGATGGAAGTTGCCGTGACAAGCTTCCATCCGACA CTGACGGGCCATGCGTGGAAGCCAGCTGTCTTTTTCCAATGGTACAACGA CTGGTTCTACCCTGCCCTAATTGAGCATCATGATACCGAGGAGGAGCTCT TTTTCCCTGCTCTGGAGGAAATATGTGGGGAGTTTCCAAAAGCGAAATCA TCAGCGGATCATGAGGAGCTGATTCGCCGTATGAACGACATTAGAGACAT GGAGAGTGTGTTTGTTGACGCAGAAGGTGATTTCACAAAGATTACAGCAG CAGTTCAGGAACTTCAGCAACAGGTGAAAGATTTCCGTAAGCTTATGAAT GAACATTTTGCTTGGGAAGAAAAGATTGTTCTTCAGATGCTTCTGGAGAA TGGCACTCCCAAAGCGACAGTAGACGCACTCATTCAACAGATCATCCAGA GGGGAGGGCTGTCTGGCAATGCACTGCTTCTTCCCGGCATTTTATATGCG CTACACTCTTGGGCAGGAGATGAAGGTGTAGAAAAACTGAGATCAGAAAT GCCAGCTCCCATTCGCTTCTTGAACGGCAGATTTTGGGACCGTGCTTGGA GAAAGAAAAGCCTTGGTGCCATTCGCTCCATCATAGCCGATGAAGATCCA GAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1216:210181..210933-

>mRNA_H-akashiwo_Contig1216.2.1 ID=mRNA_H-akashiwo_Contig1216.2.1|Name=mRNA_H-akashiwo_Contig1216.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=753bp|location=Sequence derived from alignment at H-akashiwo_Contig1216:210181..210933- (Heterosigma akashiwo CCMP452)
ATGGTCGGTTTTCCTCCATCAGCCCCGCCTTCCTCCAGTGTAATCAGGCG
AGTGTCAAAGTGGCAAGATGAAGTTATGCTCATCCCGCACGAAGCATTCC
GTATGTACATGGGGTGGATGGAAGTTGCCGTGACAAGCTTCCATCCGACA
CTGACGGGCCATGCGTGGAAGCCAGCTGTCTTTTTCCAATGGTACAACGA
CTGGTTCTACCCTGCCCTAATTGAGCATCATGATACCGAGGAGGAGCTCT
TTTTCCCTGCTCTGGAGGAAATATGTGGGGAGTTTCCAAAAGCGAAATCA
TCAGCGGATCATGAGGAGCTGATTCGCCGTATGAACGACATTAGAGACAT
GGAGAGTGTGTTTGTTGACGCAGAAGGTGATTTCACAAAGATTACAGCAG
CAGTTCAGGAACTTCAGCAACAGGTGAAAGATTTCCGTAAGCTTATGAAT
GAACATTTTGCTTGGGAAGAAAAGATTGTTCTTCAGATGCTTCTGGAGAA
TGGCACTCCCAAAGCGACAGTAGACGCACTCATTCAACAGATCATCCAGA
GGGGAGGGCTGTCTGGCAATGCACTGCTTCTTCCCGGCATTTTATATGCG
CTACACTCTTGGGCAGGAGATGAAGGTGTAGAAAAACTGAGATCAGAAAT
GCCAGCTCCCATTCGCTTCTTGAACGGCAGATTTTGGGACCGTGCTTGGA
GAAAGAAAAGCCTTGGTGCCATTCGCTCCATCATAGCCGATGAAGATCCA
GAG
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