mRNA_H-akashiwo_Contig1215.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1215.5.1
Unique NamemRNA_H-akashiwo_Contig1215.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1215.5.1 vs. uniprot
Match: A0A7S3URF0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URF0_HETAK)

HSP 1 Score: 216 bits (550), Expect = 5.470e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 PAGHLLETEGKMAGKLAGLLKLTGGAGDPLKTTYLLPTSIQPSTEKMIPFVLLMVALQAMPLLKADADLGSLVQKSDKCPFDGGALAAGFATIMCQFPHSCAATFFRYT 327
            PAGHLLETEGKMAGKLAGLLKLTGGAGDPLKTTYLLPTSIQPSTEKMIPFVLLMVALQAMPLLKADADLGSLVQKSDKCPFDGGALAAGFATIMCQFPHSCAATFFRYT
Sbjct:   70 PAGHLLETEGKMAGKLAGLLKLTGGAGDPLKTTYLLPTSIQPSTEKMIPFVLLMVALQAMPLLKADADLGSLVQKSDKCPFDGGALAAGFATIMCQFPHSCAATFFRYT 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1215.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3URF0_HETAK5.470e-70100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1215contigH-akashiwo_Contig1215:116549..117946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size331
Hectar predicted targeting categoryother localisation
Exons3
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387123.4326906-CDS-H-akashiwo_Contig1215:116548..1166011681387123.4326906-CDS-H-akashiwo_Contig1215:116548..116601Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1215 116549..116601 +
1681387123.4442513-CDS-H-akashiwo_Contig1215:116923..1170711681387123.4442513-CDS-H-akashiwo_Contig1215:116923..117071Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1215 116924..117071 +
1681387123.453013-CDS-H-akashiwo_Contig1215:117818..1179441681387123.453013-CDS-H-akashiwo_Contig1215:117818..117944Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1215 117819..117944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1215.5.1prot_H-akashiwo_Contig1215.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1215 116549..117944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1215.5.1

>prot_H-akashiwo_Contig1215.5.1 ID=prot_H-akashiwo_Contig1215.5.1|Name=mRNA_H-akashiwo_Contig1215.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
PAGHLLETEGKMAGKLAGLLKLTGGAGDPLKTTYLLPTSIQPSTEKMIPF
VLLMVALQAMPLLKADADLGSLVQKSDKCPFDGGALAAGFATIMCQFPHS
CAATFFRYT
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mRNA from alignment at H-akashiwo_Contig1215:116549..117946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1215.5.1 ID=mRNA_H-akashiwo_Contig1215.5.1|Name=mRNA_H-akashiwo_Contig1215.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-akashiwo_Contig1215:116549..117946+ (Heterosigma akashiwo CCMP452)
CCGGCGGGCCATCTGCTGGAGACAGAGGGGAAGATGGCCGGGAAATTGGC
AGGGTGAGCTGCAAGCACTTTTGATTTGAATTATTGTTGCTTGCTGTAAT
TCAATAACATTGTATATCTCCACAACTAAACTGTATTAGAAACTACTTTA
TAAACATACCATCCACATTCGAATAAATTGAAAAAACATAACCGACATCC
TTTCTTGGAAAAGGCGCCAAGGGCTTAAGAGGGCTTGTCTATTTTGTTTT
TTGAAGCATAGCAACCTCGTTGTTGTACTGAAGTTGTACATAATTTTTAT
AGTATTTTGTCTAACATAGAAAGAAGACCACTTCATTGTTGCACCTGCCT
GCTTTTATCTCTCCACAATTGCCAGACTGCTGAAGTTGACAGGGGGCGCT
GGGGACCCGCTAAAGACTACATACCTACTCCCAACTTCAATCCAGCCTAG
CACTGAGAAGATGATTCCTTTTGTGTTGCTAATGGTTGCATTGCAAGCAA
TGCCCTTACTAAAAGCTGATGCGGTATGCCGTAATAAGCACATATAGTAT
TATACATATTATGCTCTGAATTCTTTGTGCCGTGTTTTTGTTCTATCAAA
CATTTTACTGTGCATCCTTGAGGATCCTCTTTATGAGCATGGAATCTCTC
TCCCTCTCTTCTCTCTCTGGAGATTGTTCTTCATAATTTTCCAGCCTTTG
GTGGAATTCATACTCATCTTTGTTTTTTTGTAGTCTTGTTCTTGTTACTG
CCGCGACAGCTGTCATTGCTATATCACTAATAATGTGCAAAACTGTAGAA
AAGACACACTGATGAGTCACAAGATGGGTGGTTTGTTTCCTGTCTTGGGC
CCCTGTCTATCCAAATTTTATACCTTCTTTTGATGAGAATGGGATCGAGT
ACCAGACAATATATATATTGGTATGATCTCTTTCTCGCTTCCTTTTATTG
GGAGTAGGGACGAGTAATAGCGTGCGTGCAACGAGCAGGCCAATCTATAA
GCACTTGATATGAATTCATTCCTCAGGACAGCCAGGGATAATTCTGAAGA
GGCCAGTCTCTTCTTTGGTTGAAATATATTTATAGCTTCATAAGTTCCAG
ATACATTGTAATGACACTGACCTCAATATGCAATGATAAAATGGTTCTCA
CTATTTCTACTACTAATGTAGGAACAGTACTCACCACTTGTTCCAAAGCT
ATCACAACTTTCTTATGTTGGTTCCATTTTTTACCAACCCTTTCTCCTTC
ACGGTCATAAATAATGACAGGATTTGGGATCTCTTGTTCAAAAATCAGAT
AAATGCCCTTTTGATGGTGGAGCCCTTGCAGCTGGATTTGCAACAATAAT
GTGCCAGTTCCCACATTCTTGCGCTGCAACTTTCTTCCGCTACACAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1215:116549..117946+

>mRNA_H-akashiwo_Contig1215.5.1 ID=mRNA_H-akashiwo_Contig1215.5.1|Name=mRNA_H-akashiwo_Contig1215.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig1215:116549..117946+ (Heterosigma akashiwo CCMP452)
CCGGCGGGCCATCTGCTGGAGACAGAGGGGAAGATGGCCGGGAAATTGGC
AGGACTGCTGAAGTTGACAGGGGGCGCTGGGGACCCGCTAAAGACTACAT
ACCTACTCCCAACTTCAATCCAGCCTAGCACTGAGAAGATGATTCCTTTT
GTGTTGCTAATGGTTGCATTGCAAGCAATGCCCTTACTAAAAGCTGATGC
GGATTTGGGATCTCTTGTTCAAAAATCAGATAAATGCCCTTTTGATGGTG
GAGCCCTTGCAGCTGGATTTGCAACAATAATGTGCCAGTTCCCACATTCT
TGCGCTGCAACTTTCTTCCGCTACACA
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