mRNA_H-akashiwo_Contig1210.12.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.290e-10 Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNS-VYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
+++F++++ KL I + + ++ L+ IGN L+S V PT+ V VLAY V S+ E M T+T+LQCF+ADEEM+S +RY + +L +++NTH
Sbjct: 517 VSEFMIIIMKLVICLATMAATYLGLDATIGNELHSFVGPTIFVG-VLAYLVASVFAELFSMTTATILQCFIADEEMYSPAERYADNDLKDFVNTH 610
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S4TAG2_9STRA (Choline transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TAG2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.500e-10 Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHESEHV 300
++DFV+L+ KLFI +TS + FL++ + LN ++ + + +++Y M E GM ST+LQCF+ADEEMF +DR+ L + I++ E +H
Sbjct: 546 VSDFVLLIGKLFIVVTSTIGAYFFLDYHYSDELNGLWLSTMLVCLISYATAEMFNEVFGMAISTILQCFVADEEMFLPEDRFAPGSLAQTIDSTEEKHT 644
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 6.010e-10 Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 1 VIADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
V+ DFV+ + KL I + +A ++FL++ + ++L S V V+AY+V S LGM T T+LQCF+ADEEMF +DRY +L ++++ H
Sbjct: 525 VVTDFVVFIMKLVIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAH 619
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 9.360e-8 Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSV-YPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
++ F+M++A+LF+++ +A + LE + + L S+ YPT +T LAY V + ETL M+ ST+LQCF+ADEEMF+ + + L EYI+ H
Sbjct: 511 VSQFIMIIAELFMTLGAATLCYFLLEIYMADQLTSLLYPT-AMTAALAYCVSKIFVETLSMVISTILQCFIADEEMFNGH--FAKGSLKEYIDKH 602
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S2V489_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V489_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.860e-7 Identity = 31/92 (33.70%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYIN 279
+ ++V+ + K+ I++ + F F+ ++ + + L+ +Y T +LAYFV M E GM T+LQCF+ADEEM+ +R+ +L IN
Sbjct: 278 VGNYVLFIGKMVITLLATFLAFLVMDSTMSDKLHGLYAPTIFTFILAYFVSLMFVEVFGMAIYTILQCFVADEEMYEPAERFATGDLATTIN 369
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S2Y2B5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.010e-6 Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYIN 279
+ ++++ + KL I++ + F F+ L+ + + L+ +Y + T +LAYFV M E GM T+LQCF+ADEEMF+ +R+ +L IN
Sbjct: 512 VGNYILFIGKLVITVVTTFLAFLVLDSM-EDELHGLYGPIIFTFLLAYFVALMFVEVFGMAIYTILQCFVADEEMFAPAERFATGDLSTTIN 602
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.050e-6 Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 67 FIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
++FL+ + +L S V V+AY+V S LGM T T+LQCF+ADEEMF +DRY +L ++++ H
Sbjct: 603 YVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAH 675
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S1VN07_9STRA (Choline transporter-like protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VN07_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.390e-6 Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHE 288
++ V+ + KLFIS + + + +G L SV V V +++YF+ M + M ST+LQCF+ADEEMF Y E EL ++I+ ++
Sbjct: 576 VSGLVLFVGKLFISSVTTILSYFVIVEYVGEELYSVAGPVVVVFIISYFISDMFMDIFDMGISTILQCFVADEEMFDGDTCYAEGELQKWIDNYD 670
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S0C3F8_9STRA (Choline transporter-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3F8_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 3.590e-6 Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 16 VMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHESEHVK 303
++ + KLFI F ++ + I +LNSVY + V ++A+F+ M + M ST+L CF+ADEEMFS + + +L ++I+ ++S+ K
Sbjct: 301 IVFIGKLFIVSVITFGSYVLMNEYIEEDLNSVYGPLLVIFLMAWFISDMFMDVFQMGISTILHCFIADEEMFSGDQCFAQGQLKDWIDQYDSKSEK 396
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: D7FRZ5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ5_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 4.040e-6 Identity = 30/95 (31.58%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 1 VIADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
++ +FV+ + LF+ + + +++ ++ I + LNS+ +T VLAY+ M+T GM +T+LQCF+ADEE+F ++ E +L +++ H
Sbjct: 376 ILGEFVLNVMTLFVCVVTTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPSQQFAENDLRGWVDKH 470 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1210.12.1 >prot_H-akashiwo_Contig1210.12.1 ID=prot_H-akashiwo_Contig1210.12.1|Name=mRNA_H-akashiwo_Contig1210.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=171bp MLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTback to top mRNA from alignment at H-akashiwo_Contig1210:343717..344724- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1210.12.1 ID=mRNA_H-akashiwo_Contig1210.12.1|Name=mRNA_H-akashiwo_Contig1210.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-akashiwo_Contig1210:343717..344724- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1210:343717..344724- >mRNA_H-akashiwo_Contig1210.12.1 ID=mRNA_H-akashiwo_Contig1210.12.1|Name=mRNA_H-akashiwo_Contig1210.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig1210:343717..344724- (Heterosigma akashiwo CCMP452)back to top |