mRNA_H-akashiwo_Contig1210.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1210.12.1
Unique NamemRNA_H-akashiwo_Contig1210.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.290e-10
Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNS-VYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
            +++F++++ KL I + +    ++ L+  IGN L+S V PT+ V  VLAY V S+  E   M T+T+LQCF+ADEEM+S  +RY + +L +++NTH
Sbjct:  517 VSEFMIIIMKLVICLATMAATYLGLDATIGNELHSFVGPTIFVG-VLAYLVASVFAELFSMTTATILQCFIADEEMYSPAERYADNDLKDFVNTH 610          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S4TAG2_9STRA (Choline transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TAG2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.500e-10
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHESEHV 300
            ++DFV+L+ KLFI +TS    + FL++   + LN ++ +  +  +++Y    M  E  GM  ST+LQCF+ADEEMF  +DR+    L + I++ E +H 
Sbjct:  546 VSDFVLLIGKLFIVVTSTIGAYFFLDYHYSDELNGLWLSTMLVCLISYATAEMFNEVFGMAISTILQCFVADEEMFLPEDRFAPGSLAQTIDSTEEKHT 644          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.010e-10
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 VIADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
            V+ DFV+ + KL I + +A   ++FL++ + ++L S    V    V+AY+V S     LGM T T+LQCF+ADEEMF  +DRY   +L ++++ H
Sbjct:  525 VVTDFVVFIMKLVIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAH 619          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 9.360e-8
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSV-YPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
            ++ F+M++A+LF+++ +A   +  LE  + + L S+ YPT  +T  LAY V  +  ETL M+ ST+LQCF+ADEEMF+    + +  L EYI+ H
Sbjct:  511 VSQFIMIIAELFMTLGAATLCYFLLEIYMADQLTSLLYPT-AMTAALAYCVSKIFVETLSMVISTILQCFIADEEMFNGH--FAKGSLKEYIDKH 602          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S2V489_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V489_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.860e-7
Identity = 31/92 (33.70%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYIN 279
            + ++V+ + K+ I++ + F  F+ ++  + + L+ +Y     T +LAYFV  M  E  GM   T+LQCF+ADEEM+   +R+   +L   IN
Sbjct:  278 VGNYVLFIGKMVITLLATFLAFLVMDSTMSDKLHGLYAPTIFTFILAYFVSLMFVEVFGMAIYTILQCFVADEEMYEPAERFATGDLATTIN 369          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S2Y2B5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-6
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYIN 279
            + ++++ + KL I++ + F  F+ L+ +  + L+ +Y  +  T +LAYFV  M  E  GM   T+LQCF+ADEEMF+  +R+   +L   IN
Sbjct:  512 VGNYILFIGKLVITVVTTFLAFLVLDSM-EDELHGLYGPIIFTFLLAYFVALMFVEVFGMAIYTILQCFVADEEMFAPAERFATGDLSTTIN 602          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-6
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   67 FIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
            ++FL+  +  +L S    V    V+AY+V S     LGM T T+LQCF+ADEEMF  +DRY   +L ++++ H
Sbjct:  603 YVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAH 675          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S1VN07_9STRA (Choline transporter-like protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VN07_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-6
Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    4 IADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHE 288
            ++  V+ + KLFIS  +    +  +   +G  L SV   V V  +++YF+  M  +   M  ST+LQCF+ADEEMF     Y E EL ++I+ ++
Sbjct:  576 VSGLVLFVGKLFISSVTTILSYFVIVEYVGEELYSVAGPVVVVFIISYFISDMFMDIFDMGISTILQCFVADEEMFDGDTCYAEGELQKWIDNYD 670          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: A0A7S0C3F8_9STRA (Choline transporter-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3F8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.590e-6
Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   16 VMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHESEHVK 303
            ++ + KLFI     F  ++ +   I  +LNSVY  + V  ++A+F+  M  +   M  ST+L CF+ADEEMFS    + + +L ++I+ ++S+  K
Sbjct:  301 IVFIGKLFIVSVITFGSYVLMNEYIEEDLNSVYGPLLVIFLMAWFISDMFMDVFQMGISTILHCFIADEEMFSGDQCFAQGQLKDWIDQYDSKSEK 396          
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Match: D7FRZ5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.040e-6
Identity = 30/95 (31.58%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 VIADFVMLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLTETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTH 285
            ++ +FV+ +  LF+ + +   +++ ++  I + LNS+     +T VLAY+   M+T   GM  +T+LQCF+ADEE+F    ++ E +L  +++ H
Sbjct:  376 ILGEFVLNVMTLFVCVVTTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPSQQFAENDLRGWVDKH 470          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1210.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835Z6J7_9STRA3.290e-1042.11Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7S4TAG2_9STRA4.500e-1037.37Choline transporter-like protein n=2 Tax=Ditylum b... [more]
D8LIJ7_ECTSI6.010e-1040.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6V2WBV2_HETAK9.360e-841.05Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2V489_9STRA1.860e-733.70Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A7S2Y2B5_9STRA1.010e-635.87Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A6H5L007_9PHAE1.050e-641.10Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S1VN07_9STRA1.390e-634.74Choline transporter-like protein n=2 Tax=Grammatop... [more]
A0A7S0C3F8_9STRA3.590e-633.33Choline transporter-like protein n=1 Tax=Proboscia... [more]
D7FRZ5_ECTSI4.040e-631.58Choline transporter-like protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1210contigH-akashiwo_Contig1210:343717..344724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIJ7
PFAMsCholine_transpo
Model size759
Max annot lvl2759|Eukaryota
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.75e-09
EggNOG OGsKOG1362@1|root,KOG1362@2759|Eukaryota
Descriptioncholine transmembrane transporter activity
Cds size513
COG categoryH
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387122.4952202-UTR-H-akashiwo_Contig1210:343716..3439441681387122.4952202-UTR-H-akashiwo_Contig1210:343716..343944Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1210 343717..343944 -
1681387122.5449827-UTR-H-akashiwo_Contig1210:344706..3447241681387122.5449827-UTR-H-akashiwo_Contig1210:344706..344724Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1210 344707..344724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387122.5089478-CDS-H-akashiwo_Contig1210:343944..3443841681387122.5089478-CDS-H-akashiwo_Contig1210:343944..344384Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1210 343945..344384 -
1681387122.5276058-CDS-H-akashiwo_Contig1210:344633..3447061681387122.5276058-CDS-H-akashiwo_Contig1210:344633..344706Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1210 344634..344706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1210.12.1prot_H-akashiwo_Contig1210.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1210 343945..344706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1210.12.1

>prot_H-akashiwo_Contig1210.12.1 ID=prot_H-akashiwo_Contig1210.12.1|Name=mRNA_H-akashiwo_Contig1210.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=171bp
MLMAKLFISMTSAFFMFIFLEHIIGNNLNSVYPTVCVTMVLAYFVCSMLT
ETLGMMTSTLLQCFLADEEMFSAQDRYVEKELLEYINTHESEHVKEDHRL
YTPHRKPSLAHTGKRPSVVYGEGGEMERGSSRRTSFMRQMTGFVGSSRRV
DAPGGSGAAAPAPAREEDDV*
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mRNA from alignment at H-akashiwo_Contig1210:343717..344724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1210.12.1 ID=mRNA_H-akashiwo_Contig1210.12.1|Name=mRNA_H-akashiwo_Contig1210.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-akashiwo_Contig1210:343717..344724- (Heterosigma akashiwo CCMP452)
GTGATTGCCGATTTTGTGATGCTCATGGCAAAGCTCTTCATCTCTATGAC AAGCGCTTTTTTCATGTTCATTTTCCTGGAGCACATCATTGGTAAGTGTT GCTCATTTTGATCATCATCAATGAAATATATATACTGGCACATGAGCATC AATACTCAAAGCTGCGAGAAGAAGAAGACCAAACCAATTATTTCTTGCCT GGAGGAACACATCTGGTTGTGTAGGAGCATTCTGAGTATCATTTCCCAGA CCAAAACGAATTAAATGGGTTTAAATTAAAGATCTGCTTGCACCCTTTGA TGCCTTTCCACGCTCTATCTCCTTGAACAAATGTTCACAGGAAACAACCT GAACTCTGTCTACCCGACGGTGTGCGTCACCATGGTGCTGGCCTACTTTG TGTGCTCCATGCTCACGGAGACCCTGGGCATGATGACGTCCACCCTGCTG CAGTGCTTCCTAGCGGATGAGGAGATGTTCTCCGCGCAGGACCGGTACGT GGAGAAGGAGCTGCTGGAGTACATCAACACGCACGAGTCGGAGCACGTGA AGGAGGACCACCGCCTGTACACGCCGCACCGGAAGCCCTCGCTGGCGCAC ACGGGCAAGCGGCCCAGCGTGGTCTACGGCGAGGGGGGCGAGATGGAACG GGGCAGCAGCCGCCGGACCAGCTTCATGCGCCAGATGACGGGCTTTGTGG GGTCGTCCCGCCGGGTGGATGCACCGGGTGGCAGCGGAGCTGCGGCGCCG GCGCCGGCCAGGGAGGAGGATGATGTCTAGTAGTACCCCCCCCTTGACAT TCCATGAGAAAGAGATGATTCATCACAGCAATGTGCCTTTGCTGCTGCTC AGCACAGTCAATGATGAGAAAACGACAAGAAAGGCTTTCCAAGCAACCAA ACCAACCAACCGAGTGCTGTTGTTAGGGGTGGTGGTACTTTTATTTAGTG TTGTTGCTGTTTGGGACTTTTGGTGGCTTCTTCATCTTCTGTTGCTGTGA TGATGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1210:343717..344724-

>mRNA_H-akashiwo_Contig1210.12.1 ID=mRNA_H-akashiwo_Contig1210.12.1|Name=mRNA_H-akashiwo_Contig1210.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig1210:343717..344724- (Heterosigma akashiwo CCMP452)
ATGCTCATGGCAAAGCTCTTCATCTCTATGACAAGCGCTTTTTTCATGTT
CATTTTCCTGGAGCACATCATTGGAAACAACCTGAACTCTGTCTACCCGA
CGGTGTGCGTCACCATGGTGCTGGCCTACTTTGTGTGCTCCATGCTCACG
GAGACCCTGGGCATGATGACGTCCACCCTGCTGCAGTGCTTCCTAGCGGA
TGAGGAGATGTTCTCCGCGCAGGACCGGTACGTGGAGAAGGAGCTGCTGG
AGTACATCAACACGCACGAGTCGGAGCACGTGAAGGAGGACCACCGCCTG
TACACGCCGCACCGGAAGCCCTCGCTGGCGCACACGGGCAAGCGGCCCAG
CGTGGTCTACGGCGAGGGGGGCGAGATGGAACGGGGCAGCAGCCGCCGGA
CCAGCTTCATGCGCCAGATGACGGGCTTTGTGGGGTCGTCCCGCCGGGTG
GATGCACCGGGTGGCAGCGGAGCTGCGGCGCCGGCGCCGGCCAGGGAGGA
GGATGATGTCTAG
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