mRNA_H-akashiwo_Contig121.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig121.21.1
Unique NamemRNA_H-akashiwo_Contig121.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig121.21.1 vs. uniprot
Match: A0A7S3UUV6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUV6_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.180e-31
Identity = 65/154 (42.21%), Postives = 101/154 (65.58%), Query Frame = 1 
Query:  103 GLNCALNNADKEAKGKCNGIGFEIIEEDSGAAAKFVIFAGSDVWSREVDMTEASYNSWQTAEVSFDQQQNSSECGGATARISLSQLAGGDYLVDYDMDVDLNKASQDDAKAIFFGVTDTATEAGHRIRNVAINTS---RAEPNTTISSPPPVTL 555
            GL+C L   D+E  G C G+GFEIIE D+   ++FV+F G +VW+  ++ T  SYN+W+ AE+ F Q    S+CG  +A I + +   G+Y +DYD+ +DLN+ASQ  AKA+FFG+T  +++A H +RN+A+N++    A P T ++    VT+
Sbjct:    2 GLSCVLRYGDRELDGNCLGVGFEIIELDNQTHSEFVVFQGDEVWTETLNHTHTSYNTWEKAEMEFFQ----SDCG-TSAFIKMDE---GEYFLDYDIRLDLNRASQTGAKAVFFGMTTNSSDAEHMVRNIAVNSTIDATATPTTALADATTVTV 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig121.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UUV6_HETAK1.180e-3142.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig121contigH-akashiwo_Contig121:1533772..1535090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size570
Hectar predicted targeting categoryother localisation
Exons3
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.5051892-CDS-H-akashiwo_Contig121:1533772..15339141681387121.5051892-CDS-H-akashiwo_Contig121:1533772..1533914Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1533773..1533914 -
1681387121.5213687-CDS-H-akashiwo_Contig121:1534425..15345441681387121.5213687-CDS-H-akashiwo_Contig121:1534425..1534544Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1534426..1534544 -
1681387121.5314603-CDS-H-akashiwo_Contig121:1534784..15350901681387121.5314603-CDS-H-akashiwo_Contig121:1534784..1535090Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1534785..1535090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig121.21.1prot_H-akashiwo_Contig121.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig121 1533773..1535090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig121.21.1

>prot_H-akashiwo_Contig121.21.1 ID=prot_H-akashiwo_Contig121.21.1|Name=mRNA_H-akashiwo_Contig121.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=189bp
GFSSDGGSAIVTFEYFIKKANDSLGHKLGFYYGGGLNCALNNADKEAKGK
CNGIGFEIIEEDSGAAAKFVIFAGSDVWSREVDMTEASYNSWQTAEVSFD
QQQNSSECGGATARISLSQLAGGDYLVDYDMDVDLNKASQDDAKAIFFGV
TDTATEAGHRIRNVAINTSRAEPNTTISSPPPVTLEGGA
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mRNA from alignment at H-akashiwo_Contig121:1533772..1535090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig121.21.1 ID=mRNA_H-akashiwo_Contig121.21.1|Name=mRNA_H-akashiwo_Contig121.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1319bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1533772..1535090- (Heterosigma akashiwo CCMP452)
GGCTTCAGTAGCGATGGCGGCAGTGCAATCGTCACATTCGAATACTTCAT
CAAAAAAGCGAATGATTCATTGGGCCACAAGCTGGGGTTCTACTACGGGG
GAGGCTTGAATTGTGCTCTCAACAATGCAGATAAAGAAGCAAAAGGGAAG
TGCAACGGCATTGGTTTCGAAATAATTGAAGAGGACAGCGGCGCTGCTGC
GAAATTTGTGATTTTTGCAGGCAGTGATGTTTGGTCCAGAGAGGTTGACA
TGACTGAAGCCTCGTACAACTCCTGGCAGACTGCCGAGGTTTCTTTTGAC
CAGCAGGTGATTCAAAACCACAGCTTCTTGTTATCCCTGTGGCAATCTGA
GCCCGAAGTGCTTTTTAACGCAGTTTGGTCCTCATCAGCACTCAACCCTC
CTCCTTTCTAAATCAGAGTGCCATGCCTGTATGTATTATATGATGTATCT
GAAGATCCTCTTTTTGTTATTGAGACCTCATGTGCTCCGTGGGTTCTTCC
CCCCCCGCCCGCCTGCCGCCGCGGTGGGGGCGCGTGGGCGGCGCAGCAAA
ACTCCAGCGAATGCGGCGGCGCGACAGCCAGGATCTCCCTGTCGCAGCTG
GCGGGAGGGGACTACCTTGTAGACTACGACATGGATGTAGACCTGAACAA
GGCCTCCCAAGACGAGTGGGTCCCCACACCGCCAACCCTCCCCTTTCGCA
CACTGTGAAGGCGTCCCCTCCAGTAAGTTGAGGAAGTCAGAGGTGCTGCA
CCTCTCTCCATCCAGCCAATCATCAAGTGCGGCAAGCACATGTCATGGGA
GACTCGGTGTAGCATATATACACAGCCAAGGGGATAATAACTCAACGAGG
ATAGTCGCCCGGCCTCCACATGCGGTCCCTTCCACTTGGAGGCCCCACTT
CTTGCCTCTTATCTTGTTCACCAGCGAAAAACTTCAGAAAGAAAACAATC
TGCATCTGCTGAAGCATCGCACGCATATACCCTGTTTCAAACAAACCTCT
GTCCTCTCTACCCTACCACAAAAGAAAGAAAGAAAAAAGGAAAAGCAGCG
CTCATGATGCTCTGGGTAAGGAAACAGCAGTGCTAGCCCATGTGGCCGGT
GCACCTTGGCCTCACGCGATGCCAGTAAAGCGCAAGTGCCCCTCCCCCAC
TTTTTTAAGTTCTCCCGCCCGGGCAGCGCCAAGGCCATTTTCTTCGGCGT
CACGGACACGGCGACGGAAGCTGGGCACCGCATCCGGAACGTCGCCATCA
ATACCAGCCGGGCCGAACCCAATACGACCATCTCCTCGCCGCCCCCCGTG
ACCCTGGAGGGTGGCGCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig121:1533772..1535090-

>mRNA_H-akashiwo_Contig121.21.1 ID=mRNA_H-akashiwo_Contig121.21.1|Name=mRNA_H-akashiwo_Contig121.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=567bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1533772..1535090- (Heterosigma akashiwo CCMP452)
GGCTTCAGTAGCGATGGCGGCAGTGCAATCGTCACATTCGAATACTTCAT
CAAAAAAGCGAATGATTCATTGGGCCACAAGCTGGGGTTCTACTACGGGG
GAGGCTTGAATTGTGCTCTCAACAATGCAGATAAAGAAGCAAAAGGGAAG
TGCAACGGCATTGGTTTCGAAATAATTGAAGAGGACAGCGGCGCTGCTGC
GAAATTTGTGATTTTTGCAGGCAGTGATGTTTGGTCCAGAGAGGTTGACA
TGACTGAAGCCTCGTACAACTCCTGGCAGACTGCCGAGGTTTCTTTTGAC
CAGCAGCAAAACTCCAGCGAATGCGGCGGCGCGACAGCCAGGATCTCCCT
GTCGCAGCTGGCGGGAGGGGACTACCTTGTAGACTACGACATGGATGTAG
ACCTGAACAAGGCCTCCCAAGACGACGCCAAGGCCATTTTCTTCGGCGTC
ACGGACACGGCGACGGAAGCTGGGCACCGCATCCGGAACGTCGCCATCAA
TACCAGCCGGGCCGAACCCAATACGACCATCTCCTCGCCGCCCCCCGTGA
CCCTGGAGGGTGGCGCT
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