mRNA_H-akashiwo_Contig121.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig121.19.1
Unique NamemRNA_H-akashiwo_Contig121.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig121.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig121contigH-akashiwo_Contig121:1531945..1532419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size427
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.4426334-UTR-H-akashiwo_Contig121:1531944..15320681681387121.4426334-UTR-H-akashiwo_Contig121:1531944..1532068Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig121 1531945..1532068 +
1681387121.4724102-UTR-H-akashiwo_Contig121:1532359..15324191681387121.4724102-UTR-H-akashiwo_Contig121:1532359..1532419Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig121 1532360..1532419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.4527009-CDS-H-akashiwo_Contig121:1532068..15323101681387121.4527009-CDS-H-akashiwo_Contig121:1532068..1532310Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1532069..1532310 +
1681387121.462447-CDS-H-akashiwo_Contig121:1532358..15323591681387121.462447-CDS-H-akashiwo_Contig121:1532358..1532359Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1532359..1532359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig121.19.1prot_H-akashiwo_Contig121.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig121 1532069..1532359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig121.19.1

>prot_H-akashiwo_Contig121.19.1 ID=prot_H-akashiwo_Contig121.19.1|Name=mRNA_H-akashiwo_Contig121.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=81bp
MCHQLLVRSTTNIVVVDVLLVCGSQIFVLERLGLWNLATPALSAFGFFSA
KKEVLLCNNLILQTATTIHQQHLPPCEEQV*
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mRNA from alignment at H-akashiwo_Contig121:1531945..1532419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig121.19.1 ID=mRNA_H-akashiwo_Contig121.19.1|Name=mRNA_H-akashiwo_Contig121.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=475bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1531945..1532419+ (Heterosigma akashiwo CCMP452)
GATGATAATAATACATAGAGAGACGTATATCAATAATATCTATGATTTGC
TATTACTTGCTGCCCATGGTGATaAAAAAATAATGATATATGATATTTTG
CGGTCATGATGACGGTGTGGCTACATGTGCCACCAATTATTAGTGCGCAG
CACAACAAATATTGTTGTTGTTGATGTGCTGCTGGTTTGTGGGTCTCAAA
TTTTTGTTCTTGAAAGACTTGGTCTTTGGAATTTAGCCACACCAGCCCTG
TCTGCCTTTGGCTTCTTCAGCGCAAAGAAAGAAGTGCTCCTCTGCAATAA
CTTAATATTGCAAACCGCCACCACCATACATCAGCAACACCTTCCACCTT
GTGAGGAGCAAGTATAGTAGCAGACAACTAACAACGCGACAAAGATCCCC
CAGCTGCCCAGAAGATGCGCCCCCCAGACTTCTCGTCGCCGCTGGCTGGA
CAAGAACAACGAGGGCCCTCACAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig121:1531945..1532419+

>mRNA_H-akashiwo_Contig121.19.1 ID=mRNA_H-akashiwo_Contig121.19.1|Name=mRNA_H-akashiwo_Contig121.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=243bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1531945..1532419+ (Heterosigma akashiwo CCMP452)
ATGTGCCACCAATTATTAGTGCGCAGCACAACAAATATTGTTGTTGTTGA
TGTGCTGCTGGTTTGTGGGTCTCAAATTTTTGTTCTTGAAAGACTTGGTC
TTTGGAATTTAGCCACACCAGCCCTGTCTGCCTTTGGCTTCTTCAGCGCA
AAGAAAGAAGTGCTCCTCTGCAATAACTTAATATTGCAAACCGCCACCAC
CATACATCAGCAACACCTTCCACCTTGTGAGGAGCAAGTATAA
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