mRNA_H-akashiwo_Contig1209.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1209.5.1
Unique NamemRNA_H-akashiwo_Contig1209.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A7S1H271_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H271_HEMAN)

HSP 1 Score: 108 bits (269), Expect = 4.770e-26
Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:    1 SDKDCPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEE-VSDSLAYVKFTSRF--------------SAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGDV 435
            SD++C CCSGK+YK+CC+ +      P S   +MRSRY AYA R  D ++ TTH TN +WR D+  W++  L F D + FL L V E +   SD   ++ F ++                 F K  ++   +A  +  F ERS+F+ E++G W YVEGDV
Sbjct:   56 SDEECVCCSGKSYKECCQKFHSGDSWPSSPLELMRSRYSAYAYRLPDWVIGTTHKTNVDWRADQTSWRRELLGFCDGFEFLGLEVLEEDAGESDKEYFITFLAKLRTLKQPTSTSKHVKQTFSKIKSQHQNDA-LNADFKERSRFLLEDEG-WMYVEGDV 213          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A356KFN4_9BACT (Zinc chelation protein SecC n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KFN4_9BACT)

HSP 1 Score: 103 bits (258), Expect = 1.100e-25
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGDVK 438
            CPC SG  YK CC P+  +G  PP AEA+MRSRY AYA   VD++L TTHP    W DD+ +W     AF+    F  L +    E  +  A+V F +  S           + G+D  F+ERS+F++E DG W Y  G+ +
Sbjct:   10 CPCHSGAKYKRCCRPF-HQGSAPPRAEALMRSRYAAYALGLVDYVLATTHPEGPNWEDDRAEWAAGVAAFSQSTSFDGLEILSSGE-GEGEAFVTFRASLS-----------KEGEDASFSERSRFLRE-DGRWLYHSGEPR 137          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A1W1E8G1_9ZZZZ (UPF0225 protein YchJ n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A1W1E8G1_9ZZZZ)

HSP 1 Score: 101 bits (251), Expect = 1.120e-24
Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGDVK 438
            CPC S   YK CC+ Y  KG   P+A  +MRSRY AYA     +I+KTTHP N+++ ++K++WK+  + F    +FL LN+ ++ E  D+ AY+ F +  S+   K               E+S+F+KE +G WYYV+G  K
Sbjct:   10 CPCGSSLKYKKCCQKY-HKGAVAPTAALLMRSRYSAYAVGDAAYIMKTTHPQNSDYTEEKIQWKEEIMQFCHHTQFLRLNITKIAE-GDTEAYISFKAHLSSGILK---------------EKSRFLKE-NGRWYYVDGIFK 133          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A432ST54_9PROT (Zinc chelation protein SecC n=1 Tax=Sulfurospirillum sp. TaxID=2053622 RepID=A0A432ST54_9PROT)

HSP 1 Score: 100 bits (250), Expect = 2.800e-24
Identity = 58/140 (41.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGD 432
            CPC SGK YK CC P+  KG  P  A  +M+SRY AYA  +  +ILKTTHP N ++ +D+  WK++  AF     FL L + +V+E  +  AYV FT+   +   K               ERS+FVKEE G W Y  G+
Sbjct:   28 CPCGSGKKYKKCCAPF-HKGAQPKDALTLMKSRYSAYAAGESGYILKTTHPDNVDFSEDRAAWKRSVDAFCKSTAFLGLEIVDVQEGVEE-AYVTFTAHLDSGDLK---------------ERSRFVKEE-GRWLYHSGE 149          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A2S9YEV7_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YEV7_9DELT)

HSP 1 Score: 95.5 bits (236), Expect = 2.660e-22
Identity = 55/140 (39.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGD 432
            CPC SG+ +K CC   L +G      EA+MRSRY AYA   V+++L TT P   + RDD+  W +    F+   RF  L V+EV  + D  A V F ++ S             G+D  F ERS FV+  DG W+YV G+
Sbjct:    8 CPCGSGRKFKRCCR-RLHQGTPAADPEALMRSRYSAYAVGAVEYLLDTTDPEGPQHRDDRAAWAEEIRRFSTLTRFQKLEVREVGPIVDDRAEVLFFAKLSR-----------EGQDVSFAERSVFVRR-DGRWFYVSGE 134          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A091AM67_9PROT (Zinc chelation protein SecC n=1 Tax=Sulfuricurvum sp. MLSB TaxID=1537917 RepID=A0A091AM67_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 5.750e-22
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGD 432
            CPC SGK YK CC+PY  KG  P +A  +MR+RY AYA    D+I+KTTHP N ++ +D+  WKK  L F+ +  F  L + E  +  ++ A+V F +    +  K               E+S+F+KE +G W Y  G+
Sbjct:    9 CPCHSGKKYKQCCQPY-HKGTVPATAVLLMRTRYSAYALGLADYIIKTTHPNNPDFTEDRADWKKNILHFSQDTVFEGLKIIEFID-GENEAFVTFEAALGNYAMK---------------EKSRFLKE-NGRWLYESGE 130          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A2H0VWG6_9BACT (Zinc chelation protein SecC n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34 TaxID=1973936 RepID=A0A2H0VWG6_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 1.090e-21
Identity = 54/139 (38.85%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEG 429
            CPCCSGK+Y+ CC+ Y D G+ PP+A  +MRSRY AYA  KV +I++TTHP +  +  D  KW+K    F +  RF+ L +   +    S   V F +              E G  F   E+S F K  DG W Y+ G
Sbjct:    3 CPCCSGKSYEQCCKLYHD-GMLPPTALDLMRSRYSAYALSKVSYIIETTHPQSPYFEKDVSKWEKGVRQFCNTTRFVKLEILHPKYPDPSDPTVHFIAYL------------EQGAPFQLNEKSHFEKL-DGKWLYLSG 127          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A1P8KQL6_9PROT (Uncharacterized protein n=1 Tax=Poseidonibacter parvus TaxID=1850254 RepID=A0A1P8KQL6_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 4.980e-21
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNV-QEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEG 429
            C C S K YK CC+P+ D G+ P  A  +MRSR+CA+A +K ++I+ TTH +N+++ DD   W++    F D  +F+SL++ +E+  + +S    K T             + + G+D  F E+S+F+K E+  W YV+G
Sbjct:    9 CLCNSDKKYKKCCKPFHD-GVLPTLAVELMRSRFCAFALKKAEYIINTTHKSNSDFTDDLKAWREDIELFCDNTKFISLDILEEINGLDESFVSFKAT-------------LLQNGQDASFKEKSRFLKVEN-RWVYVDG 133          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A7C3QQF9_9PROT (Zinc chelation protein SecC n=1 Tax=Epsilonproteobacteria bacterium TaxID=2026809 RepID=A0A7C3QQF9_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 3.120e-20
Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGDV 435
            CPC SG+ YK CC  Y  KG  P +A  +M+S Y AYA    D+I+KTTHP N ++ DD+  WK +   F  E RF  L + E  EV  S  +V F +  S          GE        ERS+F+ E+ G W YV+G++
Sbjct:   10 CPCGSGQKYKKCCARY-HKGALPANALLLMKSHYSAYAVGNSDYIIKTTHPDNPDYTDDRKTWKASINRFCRETRFEGLKIIEWSEVG-SETFVIFNAALSG---------GE------MIERSRFLNEQ-GSWLYVDGEM 132          
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Match: A0A7W1J1R4_9BACT (UPF0225 protein H0W78_19970 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1J1R4_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 9.170e-20
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   13 CPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHILKTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNV--QEVEEVSDSLAYVKFTSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGD 432
            CPC SG++Y +CCEP+L   ++PP+AEA+MRSRY AYA  +VD++  T  P + E  D     K AA  ++ +  ++ L+V  +E    +D    V+F ++F              GK+    ERS+F K  +G W+Y++G+
Sbjct:   11 CPCTSGRSYGECCEPFLTGKVNPPTAEALMRSRYTAYAVGQVDYVAATDDPGSREKFD-----KNAAEQWSSKSEWIGLDVIAKEGGGANDQEGVVEFAAKFKL-----------GGKEHAHRERSRF-KRIEGKWHYIDGE 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1209.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1H271_HEMAN4.770e-2638.13Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A356KFN4_9BACT1.100e-2540.14Zinc chelation protein SecC n=1 Tax=Planctomycetes... [more]
A0A1W1E8G1_9ZZZZ1.120e-2438.73UPF0225 protein YchJ n=1 Tax=hydrothermal vent met... [more]
A0A432ST54_9PROT2.800e-2441.43Zinc chelation protein SecC n=1 Tax=Sulfurospirill... [more]
A0A2S9YEV7_9DELT2.660e-2239.29Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A091AM67_9PROT5.750e-2237.86Zinc chelation protein SecC n=1 Tax=Sulfuricurvum ... [more]
A0A2H0VWG6_9BACT1.090e-2138.85Zinc chelation protein SecC n=1 Tax=Chlamydiae bac... [more]
A0A1P8KQL6_9PROT4.980e-2135.71Uncharacterized protein n=1 Tax=Poseidonibacter pa... [more]
A0A7C3QQF9_9PROT3.120e-2039.72Zinc chelation protein SecC n=1 Tax=Epsilonproteob... [more]
A0A7W1J1R4_9BACT9.170e-2035.92UPF0225 protein H0W78_19970 n=1 Tax=Planctomycetes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1209contigH-akashiwo_Contig1209:207166..207618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog709032.Sulku_0548
PFAMsSEC-C
Model size453
Max annot lvl29547|Epsilonproteobacteria
KEGG koko:K09858
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.83e-25
EggNOG OGsCOG3012@1|root,COG3012@2|Bacteria,1Q5V3@1224|Proteobacteria,42UFW@68525|delta/epsilon subdivisions,2YPTX@29547|Epsilonproteobacteria
DescriptionSEC-C motif
Cds size453
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.1119115-CDS-H-akashiwo_Contig1209:207165..2076181681387121.1119115-CDS-H-akashiwo_Contig1209:207165..207618Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1209 207166..207618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1209.5.1prot_H-akashiwo_Contig1209.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1209 207166..207618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1209.5.1

>prot_H-akashiwo_Contig1209.5.1 ID=prot_H-akashiwo_Contig1209.5.1|Name=mRNA_H-akashiwo_Contig1209.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=151bp
SDKDCPCCSGKTYKDCCEPYLDKGIDPPSAEAMMRSRYCAYATRKVDHIL
KTTHPTNTEWRDDKVKWKKAALAFADEYRFLSLNVQEVEEVSDSLAYVKF
TSRFSAFGKKSTKEMGEAGKDFPFTERSKFVKEEDGLWYYVEGDVKENYE
*
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mRNA from alignment at H-akashiwo_Contig1209:207166..207618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1209.5.1 ID=mRNA_H-akashiwo_Contig1209.5.1|Name=mRNA_H-akashiwo_Contig1209.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1209:207166..207618+ (Heterosigma akashiwo CCMP452)
AGCGACAAGGATTGCCCCTGCTGCTCCGGCAAAACTTACAAGGATTGCTG CGAACCTTACCTTGACAAAGGCATTGACCCACCTTCTGCAGAAGCCATGA TGAGGTCAAGGTACTGTGCGTATGCAACCCGGAAGGTCGACCACATCTTG AAAACCACACATCCCACCAACACCGAATGGAGGGATGATAAAGTCAAGTG GAAGAAAGCAGCACTTGCATTCGCTGATGAGTACAGGTTTCTGAGCCTGA ATGTCCAGGAGGTGGAAGAGGTGAGTGATTCACTGGCCTATGTCAAGTTC ACATCTCGATTCAGTGCCTTTGGGAAGAAATCTACAAAAGAAATGGGAGA GGCAGGAAAAGATTTCCCGTTCACAGAGAGGAGCAAATTTGTGAAGGAAG AGGATGGCCTCTGGTACTATGTAGAGGGAGATGTGAAGGAGAACTACGAG TAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1209:207166..207618+

>mRNA_H-akashiwo_Contig1209.5.1 ID=mRNA_H-akashiwo_Contig1209.5.1|Name=mRNA_H-akashiwo_Contig1209.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1209:207166..207618+ (Heterosigma akashiwo CCMP452)
AGCGACAAGGATTGCCCCTGCTGCTCCGGCAAAACTTACAAGGATTGCTG
CGAACCTTACCTTGACAAAGGCATTGACCCACCTTCTGCAGAAGCCATGA
TGAGGTCAAGGTACTGTGCGTATGCAACCCGGAAGGTCGACCACATCTTG
AAAACCACACATCCCACCAACACCGAATGGAGGGATGATAAAGTCAAGTG
GAAGAAAGCAGCACTTGCATTCGCTGATGAGTACAGGTTTCTGAGCCTGA
ATGTCCAGGAGGTGGAAGAGGTGAGTGATTCACTGGCCTATGTCAAGTTC
ACATCTCGATTCAGTGCCTTTGGGAAGAAATCTACAAAAGAAATGGGAGA
GGCAGGAAAAGATTTCCCGTTCACAGAGAGGAGCAAATTTGTGAAGGAAG
AGGATGGCCTCTGGTACTATGTAGAGGGAGATGTGAAGGAGAACTACGAG
TAG
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