mRNA_H-akashiwo_Contig1208.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1208.7.1
Unique NamemRNA_H-akashiwo_Contig1208.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A7S3XX63_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX63_HETAK)

HSP 1 Score: 438 bits (1127), Expect = 3.240e-149
Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 1 
Query:   13 AKFHYPNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK 642
             +FHYPNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK
Sbjct:  422 CEFHYPNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK 631
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: D8LL90_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL90_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 2.080e-98
Identity = 149/209 (71.29%), Postives = 172/209 (82.30%), Query Frame = 1 
Query:   19 FHYPNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQT-YQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK 642
            F YP GPTILKD+NFG+D  SR+C+VGPNGAGK+TLLKLLTG L PT G ++RN R+R GIYNQHFVDRLPM + P  Y+R + ++Q  YQ  RNLLGRFGLEGHAHTI MRDLSGGQKARVVF ELSLQ  H+LFLDEPTNNLDIESIDALCTA+  FNGGVVVVTHDARL+EA +CRLW+VD+     + GEF++Y+A LL  LE K
Sbjct:  815 FKYPTGPTILKDVNFGLDQTSRVCIVGPNGAGKTTLLKLLTGALEPTEGFIRRNPRMRAGIYNQHFVDRLPMDIDPTSYLRSKFSDQCDYQQARNLLGRFGLEGHAHTIKMRDLSGGQKARVVFCELSLQAPHVLFLDEPTNNLDIESIDALCTAVTEFNGGVVVVTHDARLIEATECRLWIVDEQEVTPWQGEFDEYRADLLQKLEDK 1023
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: W7TNJ5_9STRA (Atp-binding cassette sub-family f member 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNJ5_9STRA)

HSP 1 Score: 306 bits (784), Expect = 1.060e-97
Identity = 143/207 (69.08%), Postives = 170/207 (82.13%), Query Frame = 1 
Query:   19 FHYPNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDG-GCWAFNGEFEDYKAQLLNDLE 636
            F YPN P I   +NFG+DLDSRIC+VGPNG+GKSTLLKL+TG L PT GE++RN +LRMGIYNQHFVDRLPM  SP++Y+R    ++TYQS RN+LGR+GL+GHAH IP+RDLSGGQKARVVF ELSL   HILFLDEPTNNLDIE+IDALC AI  FNGGVV+V+HDARL+EA  CR+W+V +      F GEFEDYK +LL+ +E
Sbjct:  416 FRYPNSPWIFDKLNFGMDLDSRICIVGPNGSGKSTLLKLVTGALEPTKGEIRRNSKLRMGIYNQHFVDRLPMDKSPIEYLRSLFPDETYQSVRNVLGRYGLQGHAHEIPIRDLSGGQKARVVFVELSLMAPHILFLDEPTNNLDIETIDALCEAINEFNGGVVLVSHDARLIEASGCRVWIVGENRDVVQFPGEFEDYKKELLDKME 622
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A7S2Y1S2_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y1S2_9STRA)

HSP 1 Score: 293 bits (751), Expect = 6.480e-96
Identity = 136/212 (64.15%), Postives = 169/212 (79.72%), Query Frame = 1 
Query:   10 TAKFHY-PNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK 642
            T  F Y P  P I + ++FGID+DSR+ +VGPNGAGKSTLLKLLTGE+ PT G+++RN RLRMGIYNQHFVD+LPM  +PV+++R +++ + YQS RN LG++GLEGHAH + MRDLSGGQKARVVF +LSL+  HIL LDEPTNNLDIESIDALC AI  FNGGVVVVTHD RL++ C+C LWVV+  G   +   F+DYKA +L +LE +
Sbjct:  145 TVHFRYSPKHPVIFETVDFGIDMDSRVTIVGPNGAGKSTLLKLLTGEVDPTRGDVRRNPRLRMGIYNQHFVDKLPMDKTPVEFLRDKYSNEDYQSVRNRLGKYGLEGHAHEVAMRDLSGGQKARVVFVDLSLEEPHILLLDEPTNNLDIESIDALCDAINEFNGGVVVVTHDQRLIDECECTLWVVEKLGVTEWTEGFDDYKASILAELERE 356
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A7S4AFI6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFI6_9STRA)

HSP 1 Score: 291 bits (744), Expect = 9.780e-95
Identity = 138/211 (65.40%), Postives = 164/211 (77.73%), Query Frame = 1 
Query:   13 AKFHYPNG-PTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK 642
             KF Y    P I + ++FGID+DSRIC+VGPNGAGK+TLLKLLTGE+  T G+++RN RLRMGIYNQHFVDRLPM  +PV+++R   N+  YQ+ RN LGR+GLEGHAH + MRDLSGGQKARVV  ELSLQ  HIL LDEPTNNLDIE+IDALC AI  FNGG+VVVTHD RL+E CDC LWVV+  G   +   FEDYK  +L +LE +
Sbjct:  159 VKFRYSEKHPVIFEKIDFGIDMDSRICIVGPNGAGKTTLLKLLTGEIKATKGDVRRNPRLRMGIYNQHFVDRLPMGKTPVEHLRDRFNDLDYQNCRNRLGRYGLEGHAHEVVMRDLSGGQKARVVLVELSLQMPHILLLDEPTNNLDIETIDALCDAINEFNGGIVVVTHDQRLIEECDCTLWVVEKLGVTEWTEGFEDYKDSILRELEEQ 369
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A7R9ZGA7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGA7_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.370e-94
Identity = 137/207 (66.18%), Postives = 164/207 (79.23%), Query Frame = 1 
Query:   19 FHY-PNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLE 636
            F Y P  P I  +++FGID+DSRICVVGPNGAGKSTLLKLLTGE+ PT G+++RN RLRMGIYNQHFVDRLPM+ +PV+++R    ++ YQS RN LG++GLEGHAH + MRDLSGGQKARVVF ELSLQ  H+L LDEPTNNLDIE+IDAL  A+  FNGG+VVVTHD RL+E CDC LWVV+      +   FEDYK  LL ++E
Sbjct:  218 FRYSPKHPVIFDEIDFGIDMDSRICVVGPNGAGKSTLLKLLTGEVEPTRGDVRRNPRLRMGIYNQHFVDRLPMTKTPVEHLRDRFQDEDYQSVRNRLGKYGLEGHAHEVVMRDLSGGQKARVVFVELSLQRPHVLLLDEPTNNLDIETIDALIDAMNEFNGGIVVVTHDQRLIENCDCSLWVVEKQAVTKWEAGFEDYKETLLREME 424
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A7S1ZRI5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRI5_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.680e-94
Identity = 143/207 (69.08%), Postives = 166/207 (80.19%), Query Frame = 1 
Query:   19 FHY-PNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLE 636
            F Y P  P I + ++FGID+DSRICVVGPNGAGKSTLLKLLTGE+T TTGE++RN RLRMGIYNQHFVDRLPM  +PV+++R    ++TYQS RN LG++GLEGHAH + MRDLSGGQKARVVF ELSLQ  HIL LDEPTNNLDIE+IDAL  AI  FNGG+VVVTHD RL+E CDC LWVV+  G   +   FEDYK  LL ++E
Sbjct:  529 FRYSPKHPIIFEKIDFGIDMDSRICVVGPNGAGKSTLLKLLTGEITATTGEVRRNPRLRMGIYNQHFVDRLPMDKTPVEHLRDRFQDETYQSVRNRLGKYGLEGHAHEVTMRDLSGGQKARVVFVELSLQRPHILLLDEPTNNLDIETIDALVDAINEFNGGIVVVTHDQRLIEQCDCTLWVVEKQGVTKWEAGFEDYKDTLLREME 735
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A4D9D000_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D000_9STRA)

HSP 1 Score: 306 bits (784), Expect = 8.080e-94
Identity = 143/207 (69.08%), Postives = 170/207 (82.13%), Query Frame = 1 
Query:   19 FHYPNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDG-GCWAFNGEFEDYKAQLLNDLE 636
            F YPN P I   +NFG+DLDSRIC+VGPNG+GKSTLLKL+TG L PT GE++RN +LRMGIYNQHFVDRLPM  SP++Y+R    ++TYQS RN+LGR+GL+GHAH IP+RDLSGGQKARVVF ELSL   HILFLDEPTNNLDIE+IDALC AI  FNGGVV+V+HDARL+EA  CR+W+V +      F GEFEDYK +LL+ +E
Sbjct:  925 FRYPNSPWIFDKLNFGMDLDSRICIVGPNGSGKSTLLKLVTGALEPTKGEIRRNSKLRMGIYNQHFVDRLPMDKSPIEYLRSLFPDETYQSVRNVLGRYGLQGHAHEIPIRDLSGGQKARVVFVELSLMAPHILFLDEPTNNLDIETIDALCEAINEFNGGVVLVSHDARLIEASGCRVWIVGENRDVVQFPGEFEDYKKELLDKME 1131
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BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A7S0GCG2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCG2_9STRA)

HSP 1 Score: 295 bits (754), Expect = 1.730e-93
Identity = 137/211 (64.93%), Postives = 165/211 (78.20%), Query Frame = 1 
Query:   13 AKFHY-PNGPTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK 642
              F Y P  P I ++++FGID+DSRIC+VGPNGAGKSTLLK+LTGE+ PT G+ +RN RLRMGIYNQHFVDRLPM  + V++++   +E+ YQS RN LGR+GLEGHAH + MRDLSGGQKARVVF ELSLQ  HIL LDEPTNNLDIE+IDAL  A+  FNGG+VVVTHDARL+E CDC LWVV+  G   +   F DYK  +L +LE +
Sbjct:  390 VNFRYGPKHPVIFEEVDFGIDMDSRICIVGPNGAGKSTLLKILTGEIQPTIGDCRRNPRLRMGIYNQHFVDRLPMGKTAVEHLKDRFSEEDYQSIRNRLGRYGLEGHAHEVVMRDLSGGQKARVVFVELSLQRPHILLLDEPTNNLDIETIDALVDAVNEFNGGIVVVTHDARLIEECDCNLWVVEKQGVTKWEAGFNDYKESILRELEEQ 600
[Close]
BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Match: A0A6T7IIE1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7IIE1_9STRA)

HSP 1 Score: 287 bits (734), Expect = 5.310e-93
Identity = 133/200 (66.50%), Postives = 159/200 (79.50%), Query Frame = 1 
Query:   37 PTILKDMNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIYNQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRDLSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGVVVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLE 636
            P I K+++FGID+DSRIC+VG NG+GKSTLLKLLTGE+ P TGEL+RN RLRMGIYNQHFVDRLPM  +PV+++R    +  YQS RN LG++GLEGHAH + MRDLSGGQKARVVF ELSLQ  HIL LDEPTNNLD E+IDAL  AI  FNGG+VVVTHD RL+ +C+C LWVV+  G   ++  F+DYK  LL  +E
Sbjct:  183 PVIFKEVDFGIDMDSRICIVGANGSGKSTLLKLLTGEINPVTGELRRNPRLRMGIYNQHFVDRLPMGKTPVEHLRSRFEDLDYQSARNRLGKYGLEGHAHEVTMRDLSGGQKARVVFVELSLQRPHILLLDEPTNNLDTETIDALIDAINEFNGGIVVVTHDQRLISSCNCNLWVVEKEGVTIWSEGFDDYKDHLLRQIE 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1208.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XX63_HETAK3.240e-14999.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LL90_ECTSI2.080e-9871.29Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
W7TNJ5_9STRA1.060e-9769.08Atp-binding cassette sub-family f member 1 n=1 Tax... [more]
A0A7S2Y1S2_9STRA6.480e-9664.15Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S4AFI6_9STRA9.780e-9565.40Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7R9ZGA7_9STRA1.370e-9466.18Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1ZRI5_9STRA1.680e-9469.08Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A4D9D000_9STRA8.080e-9469.08Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0GCG2_9STRA1.730e-9364.93Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6T7IIE1_9STRA5.310e-9366.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1208contigH-akashiwo_Contig1208:263360..270114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LL90
Preferred nameABCF1
PFAMsABC_tran,ABC_tran_Xtn
Model size642
Max annot lvl2759|Eukaryota
KEGG koko:K06184
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006810,GO:0006950,GO:0006952,GO:0006954,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008494,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0017076,GO:0019222,GO:0019538,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042788,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045182,GO:0045727,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0055085,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090079,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
Exons5
Evalue2.84e-91
EggNOG OGsCOG0488@1|root,KOG0066@2759|Eukaryota
Descriptiontranslation activator activity
Cds size588
COG categoryJ
BRITEko00000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1208.7.1prot_H-akashiwo_Contig1208.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1208 263414..270114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.6000924-UTR-H-akashiwo_Contig1208:263359..2634131681387120.6000924-UTR-H-akashiwo_Contig1208:263359..263413Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1208 263360..263413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.6103673-CDS-H-akashiwo_Contig1208:263413..2635691681387120.6103673-CDS-H-akashiwo_Contig1208:263413..263569Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 263414..263569 +
1681387120.6191769-CDS-H-akashiwo_Contig1208:265817..2659181681387120.6191769-CDS-H-akashiwo_Contig1208:265817..265918Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 265818..265918 +
1681387120.6286075-CDS-H-akashiwo_Contig1208:266956..2670931681387120.6286075-CDS-H-akashiwo_Contig1208:266956..267093Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 266957..267093 +
1681387120.6392493-CDS-H-akashiwo_Contig1208:268547..2686501681387120.6392493-CDS-H-akashiwo_Contig1208:268547..268650Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 268548..268650 +
1681387120.6472063-CDS-H-akashiwo_Contig1208:270023..2701141681387120.6472063-CDS-H-akashiwo_Contig1208:270023..270114Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 270024..270114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1208.7.1

>prot_H-akashiwo_Contig1208.7.1 ID=prot_H-akashiwo_Contig1208.7.1|Name=mRNA_H-akashiwo_Contig1208.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=196bp
MNFGIDLDSRICVVGPNGAGKSTLLKLLTGELTPTTGELKRNQRLRMGIY
NQHFVDRLPMSLSPVDYIRQEHNEQTYQSTRNLLGRFGLEGHAHTIPMRD
LSGGQKARVVFTELSLQHAHILFLDEPTNNLDIESIDALCTAIQNFNGGV
VVVTHDARLVEACDCRLWVVDDGGCWAFNGEFEDYKAQLLNDLEHK
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mRNA from alignment at H-akashiwo_Contig1208:263360..270114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1208.7.1 ID=mRNA_H-akashiwo_Contig1208.7.1|Name=mRNA_H-akashiwo_Contig1208.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6755bp|location=Sequence derived from alignment at H-akashiwo_Contig1208:263360..270114+ (Heterosigma akashiwo CCMP452)
AGGTGCTAGACTGCGAAGTTCCACTACCCGAACGGCCCCACCATCCTGAA
GGACATGAACTTCGGCATCGACCTGGACTCGCGCATCTGCGTGGTGGGCC
CCAACGGCGCGGGCAAGAGCACGCTGCTCAAGCTGCTCACGGGCGAGCTG
ACCCCCACCACCGGCGAGCTCAAGCGGAACCAGCGCCTGCGCATGGGCAT
CTACAACCAGGTGCGCCGCCGCCCTTGGAGGGGGGCGCATGGGTATCCAC
CTCTAGAAAGGCGGGGCTAAAGAATCAGGGGAGGTGGTAACAGGGCTTGA
AGTTTTTTTTTCTTCTTCTTCTTCTTAAGGGTGTCTCAGCGACACTGGGA
CCTCTCGCGGGAACTGCAATAACTTTTGAACCATAAACAGTGAGAAGAAG
CTGCTTGGTGGTTATATTTTAGGGGTCATTTGACAGCAAAAAACACACTG
GTATCAGCAAAAAAAGCCTTTTCTGGCATTGGTTTTGAACATTTGAAAAA
AGTGGTTATTTTGGGAATCAAAGCTTATATTTTCAGATTGGCCGATAGGA
TTTCTTCCATACTTGGACAGCAAGTTCCCATGGTAGTACTCCAGCCCCCT
GTAGGGCCTGGGGCTGTGCAAACCCTTTACTTCCAACATTTCCAAAAGTG
ATGTGTCCAAGCATGCCTCCAAGTTGGGTGGGTATTGTATCGGCCGTTCT
TGATATCCATTCATCCAAAGTTTCTGTCCTTTTCCCATTCAGAGATAGAC
ACTTTCTTCACAACCAATAACTCCTTTCATCAACAAAAAACCGGTTATTT
CTTTTTTCGGGTTGCGCAGCGGGCGGCACACAACAACCACTGACGTGTTG
TGGTCGTCATCATCATCAACCAACCAAACCACGTGATCTGATGTTCTGAG
AACAAAAACGAGGTTCGCAAATGCAAAACTATATATATATTTTTTTTTCC
ATGGTGACGATATAGCTCGTGCGACGCATCGCATGCTTGAAGTTGCGGTA
TACATCATGAAACCAATATATGTAAACAACAAAATATCAAGTATAGGTAC
GCTTTCGCCGATGTGAGACAAGGGCCAAAGATAATCCAACCGCCGCAACT
GCCCTCTGGCTCTGGCGTGGTACATGTTTTTAATTTGTTAAGGAATACGT
GGTTGTGGAAAAGATGAGGTAGAAGAGAAAGATCACCTGCCCTGGCACTG
GCGATCCTTCTGGAAAAAGTAGTTTGCGTCAATGAAAAACCAGTTTTCTC
AGCGTCAAGAAACTGGTTTTTGAAGGGGAAAATAAACTTTGCGAAGTTCC
ACAAAAACTAAACCTGTCATTTCTGAAAAGTGCAGTTTTTGTATTGAAAT
GTCCTGCTTATGCATATCTTTTTTCAAATTTACTCATGAATAAACGATTT
AAAAAAAGAAGTGAATAGTGTAAACTACAAAGTTACTGGCCGTATTTTAA
CTGCAAATCAAAATTTACTCAATGATTTCTACGAAAAAAGCTCATTTTAC
ATATCCGCCCTTTCTCCGTTCAAAATGAAATATTTTATATCTATCTAGTG
GGAATTTCGCTCAACTCCACAGACAACAAACCTACTGCACAGCCTTGGAA
GGGAAGATGGAAACAAGCGATCTTATCTGAATGAAAGTAAGCTATCGCCG
AGTCCGAAATGATCAAAGTGGCTACAAGTAGACGATTTGAGTGTTCGGCT
AGCTGTGTAGAAAGATTCAAGGCCATTTGATTCCATTTAGATGCTCCTTG
TCCATGGTAAAGTCCGTGATATTTGGGGCTGTTTTAGGTAAAAGTAGAGC
GATGGTTCGTGCTCGTTTAATCAAATATTTGGCCTGCGAAGGTTGAATTC
ATTTATTTAATAGGTAAAGACTCGCATATATTGTGATCGGTACCTTAGGT
GAATGTTTAGGTGCTGAGCCAAACGTCTACTTCCATGGCATTATGAAGGT
AAAAACTCGCTTGCACCTTCTTCCAGTAGAATGGCCCCTATTGCCGTGCG
TAAAACTCCCGTTTCTTTCTTTTTCCTTCTGGCGAATTCTCTGCGGTGAA
TGATTGCAGTGCTCCGAAAAATTAAGGGGCCACAAATGAAAGAATAATAT
GTTTATTTTTCGAAAAAAAAAAGGCGTTTGAAAAGCGATGCCAATAACCG
CTTTTTTTCGGGCAAAAAGGGTTCAAAAAAAGTGTTGCTGAGACACCCTT
AAGTTTTGGTAATGGATAGGGGTGGGAGAGGTGGGACCTAGAAGTGGAAG
GGTCCGCTTGTGGCGGCCAGGGCTTCGGCCCTTATAGTTATCCGAGCGGC
TGGACCTTAAATAAATAAATTAAAATCATCATCATCATCATCATTATCAT
ACCATCAGTGATCACTTTCATTTCATTGTAATAAATTAAAAAAAAAATAG
TAAAACATATCATACATGTAGTATAAACACAAATAAATAAATAACAAACA
ACAACCAGCACTTTGTGGACCGGTTACCCATGAGCTTGAGCCCAGTGGAC
TACATCCGGCAGGAGCACAACGAACAAACATACCAGTCTACACGAAACCT
CCTTGGCCGGTGGGTTGTTGGTGGCGGGGTCCCTGTTCCTTTTGGCACCC
ATCCGCATAAGGAATACCCCCGCGTGCACAACTGTGCAAGCGTAAAACGT
TGTTATGTTGGCATCGTCCGCTTACACAGCAACACAGCAGTTGGTTTGTT
GTAAACAACCCGCACACTTTTAGAGAGTGAACAAAACCTGATGTCTTGAT
GATGATTGTGTGGCTGACGCACACAACAACAATAATGCTGGCAGCTGCCC
CTCCTGACAGCTGCTCTGCTGTTATGCTGGCAACAACCATCCTTGGATGT
TGCCATGGTGATGATCATAGATCACGTACTGTGAACCCATGTTTCCCTTT
CTCATCACTCCCTATTCCCATCATTACTTTTACATTAATCCACCCATAAA
AGATCTACTCTTCACTTTGGGGGCAGGGCACTTGCCCTTGCCCCTGGTCT
TCGAGCTGGGCTGCTGAATGCAGCTTTCACTCAGAACAACGGTAATGGGT
CCTCACTGATCGTATCGCCTTTGCGTACGCTCGGCGGCCCGCTGGATGGA
GTTCGATCAAGATCTCTGCCCGTCACTCTACCTATGTCTTACTGGGGCTG
TGGATACCCTCGAAGGCCGATTCTGTGCTGCTCGCCCTGGATTCTGACTC
TGCATCAACTTCTGGACTGGGTGGCCCTGGGCTAGAGTCACCGTCGTATT
CAATCAACCGACTCGCCTGGATGGCTCGTGTTCGCAATCAGAACATCGTA
AAATAGTACACTAATCCAGGCCTGGTGCAAAACCAGTATTCCCCGTAACC
ATGGTCACTGTGCTACCCTCCTTCATTCACTTATATAACGGTGGCCCAGG
TGCTATGAACTGTTCTATTGCAGAGAATTGTTGTTCTATACACTCTTCTT
CTTGATGCTCTCGACTACGGCCCCATCCTCCCTCCTCCCAACGAGGACTC
GCACCGTACCGCGAGTACCCCCCAACTCGCTGCAACCTCGACCGGCGGGC
GATGCGCACCACGCACGGGCCCGCCGCCGCCGCCGCCGCCGCGGCAGGTT
CGGCCTGGAGGGCCACGCGCACACGATCCCCATGCGCGACCTGAGCGGGG
GCCAGAAGGCGCGCGTGGTCTTCACGGAGCTCAGCCTGCAGCACGCCCAC
ATCCTCTTCCTGGACGAGCCCACCAACAACCTCGGTGGGGCGGGGGCGCC
GGGCCCCGGGCCCCGGGGGGGGGGCTTCGGGCGGCCGGGGCGCCGGCCCC
TTCCTCTTCTTCTTCTCTTTCTCCTCTTCTTCTCCTGTTGTCCACCTTAC
ACGCGGGGGCAACGATGAGTGCGTAGAAGTGGCGCAACAATCGTTTCGAG
GTGGCACACCACCTGCCCCCCCTGTGAGAGCAGCCGTCATGCGGTGGTGG
TGTTTTTCGTGTTCCTGGATGAGGAGAGCCGTAGTCACTCCCCATCATCA
CACTCGAGGTAGCCTGAAGAAGACTGGTGGCTGAAGTGAAGCCAGTCGTG
GGGTGGAATCCCCGACATGCATGCATAGCTGCCATAGAGAGGGGTGTTGT
TGGGATACGTAGTGTTTTTCAATCATCAACAATAAAGATGAATACATCTT
CTGTCCACAGTAGTTTGTTATTTTGGGAGAGCCTGGAACCAGTGTCAGAC
CTGCTCCACGTCAAGACATTAGTAATGTTATGTCACAGTAGAAGGGAAAA
ATGATTGTCAAACCCTGGTCTTGTCTGAGACTGCCAAAAAATAACAACTA
ATCTATATCATTGTTACCTAAATTGCTGACCTCCCCTTCAATGCTGCCGC
CTATCATGGTAGTGAGTTGTCGGAGGAAGCGCCAACAGATGAGACAACTG
AAACACTGGATCTGGGCAAAAGGGTAAAACAGGGTATGTAGGACTTCGCG
CAGGTGGAGTTTCCGCTGGTCACTAGCGATACGCTGTCTGTCAAAGAACG
TAGACGAAAAGAAAAAAAAGGTTTTTGGTAGAAGTGTTATTCGGCGATTG
TGGCGTGCTTCTTTCAGAAGGGTGCGATATGCTGTGGGTGGGGTGTTGTC
AGTGGGTTGTAGGGGGCAGTGCCCCCTAAAGAGGGTAAAGCAAGGACAGT
GGTGTTGGAGAGGACGTATTGTGTGCACTGCTGGTCGTTTTGGTGGGAGG
TGTTTCTTTTCTGCTTGAAGCGTGGCAACTGCTTTAGAGAACACAGCAGT
GTCTGAGGTGGAGTGCCTATTGTTCGAAAACATGGAAACTGGCTCTTGGC
GCATGGCTTCACATCAAATTCAAATATTTTCCCTCAAGGGATCAATTATC
AGTTTATGGAAAGAGCTCTCCTGGTTGCACATATTGAAAGGAGAAGAAGA
GTGGGGAGATATAAAGGTATTGCACCGTCGGATTTGTATACCAACAACAA
ATAGAAATCAATTTCCCACAGAAGAAAGACGAAAGAAGCGGGCAGGTGTT
ATGAGTGGCGGCGTGGCAGCATCAGTTTTGGTCTTTGCAGGGTGCCGCGC
AAAAGGAAGGCAACGCGCACGGCGCACTGCCCCCCCAGCCCGTGCCCCAC
CACCCGTCGCACCTGCCCCCCCAACACAAACACACACCCTTCCCCTGCCG
GGCGGGCGGGTCAAGCGGGCGGGCCGGGCGGGGCGCAGACATCGAGTCCA
TCGACGCGCTCTGCACGGCCATCCAGAACTTCAACGGCGGCGTGGTGGTG
GTCACGCACGACGCGCGCCTGGTGGAGGCCTGCGACTGCCGGTAACACGA
TATATAAGGCGCACCACCGCCGTGCAACTTGGGTCGGCGCCGCACCCCGC
ACGTTGTGTGCCGCTGACGCTCGACGGCACGGAGGATGACCCCCACCGGG
CCGCACACTTCTGTGAAAGTGCTTCAGGGGACCGTTCTTTAATTACGCCA
TTTGAAAATCTCAAAAGGGTCCTGGGTATAGTCAAGCGTCATATTGGATT
TCAAAGGGTCCCTGCACGCGTCATATGTGATCTCAAAGGGTCCTGTCACT
TGTCGAAGTCGAAGTTGATTTTTTTACATATCCATATCAAAAAAAGGCAT
TTTTTCTCCTCATCATTAATGATCATACATCATTTTCGTGCTCGTGGCTG
TGCTCATCTTTTTTCTGTTCGGCCCCACCATCCAGTAATAGCAGCTTACC
CTACTTATCCCTTCCGCGCTGCAATCCAATTTTTTTCAGAAGTAAAATTC
ATCATCATCATCATCATCATCATCACCTCGTCGTCGTCATTTGTCGTCGT
TGTCGTCGTCGTCGTCGCCGCGAATCAGCAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCACCACCACCACCACCACCACCACACCACCACCAA
AAAAAAATCATATAGGGCTTTTCAAATTACTACTGGTTTTCGTTAATTTC
CCAACAGAAAATGCTGGGATTTTCGGGAATTTTCAAATATGTAGCAGGAT
TCCCGTCTAATTTCCCGTGAAAACAATCAAATTCTCGCTCAAATCCTAAA
GAAAAGGCAGAGGTGTAAATAGGAGATGAAAATTATAAATTCTAATAAAA
AGGGTATTTTCTAATGATAATTTACTAAAGTTCTACATAATATCCATCGA
TTCCCTGACGACGACGACGAACAGAGGAGCCGCAGCAATCATGTTCGATC
GAGCTCGCCATTCCGTCATTTTTACCCAAAAGGGTCCCTGCAATATGACG
TCATTTGGAAAATGGAAGGGGGGGTCCAAGCGTCATGTCCATCTCAAAAG
GGTGGGTGGGTGCTGTCAATGACGTAATTAAAGAACGGTCCCCAGCGTGT
GTGGTTGTCAATGACGATGTTCGGGGGCTGGGTGAGCATCAGAAGGTTGT
TGTTGTGACAAATAATAATCGTACATGTATATGCTTTGCATCATGGCTGT
GAGTCTCTGGTGGTGGTGGCAGTGTATATGTTGAAATGGTAAATGTATTT
GCAATGTTAATCTCGACTCTGATTCAGAAGCATACCAGAGCATCGTGCAG
TATCATTTTTGCTGCAATCATCACGCTACGGCAAAGGATGGCCAAGCCGT
TTGCTTGTTCGAGCAATCGAGCAGGATGTTCGCCCAACGACGGGCCGGAC
CGGGCGGGGGGCAGGTTGTGGGTGGTGGACGACGGCGGCTGCTGGGCCTT
CAACGGGGAATTTGAGGACTACAAGGCCCAGCTACTGAACGACCTGGAAC
ACAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1208:263360..270114+

>mRNA_H-akashiwo_Contig1208.7.1 ID=mRNA_H-akashiwo_Contig1208.7.1|Name=mRNA_H-akashiwo_Contig1208.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=588bp|location=Sequence derived from alignment at H-akashiwo_Contig1208:263360..270114+ (Heterosigma akashiwo CCMP452)
ATGAACTTCGGCATCGACCTGGACTCGCGCATCTGCGTGGTGGGCCCCAA
CGGCGCGGGCAAGAGCACGCTGCTCAAGCTGCTCACGGGCGAGCTGACCC
CCACCACCGGCGAGCTCAAGCGGAACCAGCGCCTGCGCATGGGCATCTAC
AACCAGCACTTTGTGGACCGGTTACCCATGAGCTTGAGCCCAGTGGACTA
CATCCGGCAGGAGCACAACGAACAAACATACCAGTCTACACGAAACCTCC
TTGGCCGGTTCGGCCTGGAGGGCCACGCGCACACGATCCCCATGCGCGAC
CTGAGCGGGGGCCAGAAGGCGCGCGTGGTCTTCACGGAGCTCAGCCTGCA
GCACGCCCACATCCTCTTCCTGGACGAGCCCACCAACAACCTCGACATCG
AGTCCATCGACGCGCTCTGCACGGCCATCCAGAACTTCAACGGCGGCGTG
GTGGTGGTCACGCACGACGCGCGCCTGGTGGAGGCCTGCGACTGCCGGTT
GTGGGTGGTGGACGACGGCGGCTGCTGGGCCTTCAACGGGGAATTTGAGG
ACTACAAGGCCCAGCTACTGAACGACCTGGAACACAAG
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