mRNA_H-akashiwo_Contig1208.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1208.2.1
Unique NamemRNA_H-akashiwo_Contig1208.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A7S3XRA7_HETAK (Isoleucine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRA7_HETAK)

HSP 1 Score: 154 bits (389), Expect = 4.870e-42
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ
Sbjct:  350 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 417
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A7S3GN89_9STRA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN89_9STRA)

HSP 1 Score: 133 bits (335), Expect = 9.410e-35
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFVSVEKIK +LLANN  TYWVPAFV+EKRFHNWL DAKDWAISRNRFWGTPIPLW SDD +
Sbjct:  432 YKAVPSWFVSVEKIKPQLLANNSLTYWVPAFVQEKRFHNWLADAKDWAISRNRFWGTPIPLWISDDLE 499
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: W7U130_9STRA (Isoleucine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U130_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.400e-34
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFV+V  +KE+LLANN +TYWVPAFVKE RFHNWL DAKDWAISRNRFWGTPIPLWCS+D +
Sbjct:  432 YKAVPSWFVAVGTVKEKLLANNQKTYWVPAFVKEHRFHNWLADAKDWAISRNRFWGTPIPLWCSEDME 499
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A812WIS4_9DINO (IARS1 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812WIS4_9DINO)

HSP 1 Score: 120 bits (300), Expect = 9.490e-34
Identity = 46/66 (69.70%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    7 AVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            A+PSWF+ VE+++E+L+ NN+QTYWVP FVKEKRFHNWL +A+DW +SRNRFWGTPIPLW S D++
Sbjct:    1 AIPSWFIKVEEMREKLIKNNNQTYWVPPFVKEKRFHNWLTEARDWCVSRNRFWGTPIPLWVSSDFE 66
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A482S0Q8_9ARCH (Isoleucine--tRNA ligase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0Q8_9ARCH)

HSP 1 Score: 130 bits (326), Expect = 1.550e-33
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFV+VEK++ +LLANN QTYWVP FV+EKRFHNWL DAKDWAISRNRFWGTPIPLW SDD +
Sbjct:  362 YKAVPSWFVTVEKLRPQLLANNAQTYWVPNFVQEKRFHNWLADAKDWAISRNRFWGTPIPLWISDDLE 429
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A1V9YVA6_9STRA (Isoleucine--tRNA ligase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVA6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.880e-33
Identity = 51/68 (75.00%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            Y+AVP WF++VEKIK++++ANN +TYWVPAFVKEKRFHNWL D KDW +SRNRFWGTP+PLW SDDY+
Sbjct:  421 YRAVPGWFINVEKIKDKIIANNQKTYWVPAFVKEKRFHNWLVDGKDWNVSRNRFWGTPLPLWVSDDYE 488
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A1X7SSF1_AMPQE (Isoleucine--tRNA ligase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SSF1_AMPQE)

HSP 1 Score: 124 bits (311), Expect = 3.780e-33
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFV VE + E+LL NN + YWVP FVK+KRFHNWL+DA+DWAISRNR+WGTPIPLW SDD++
Sbjct:   51 YKAVPSWFVRVESLIEKLLKNNQKCYWVPEFVKDKRFHNWLKDARDWAISRNRYWGTPIPLWVSDDFE 118
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BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: F0YNH0_AURAN (Isoleucine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNH0_AURAN)

HSP 1 Score: 129 bits (323), Expect = 3.930e-33
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDD 198
            YKAVPSWFV+VE IK++L+ NN QTYWVPA VKEKRFHNWL DAKDWAISRNRFWGTPIPLW SDD
Sbjct:  418 YKAVPSWFVAVEAIKDKLIKNNAQTYWVPASVKEKRFHNWLADAKDWAISRNRFWGTPIPLWISDD 483
[Close]
BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: L1K156_GUITC (Isoleucine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K156_GUITC)

HSP 1 Score: 128 bits (322), Expect = 5.360e-33
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFV VE +KE+LLANND+TYWVP FVKEKRFHNWL  A+DWAISRNRFWGTPIP+W S+D++
Sbjct:  420 YKAVPSWFVKVETLKEKLLANNDKTYWVPDFVKEKRFHNWLAGARDWAISRNRFWGTPIPIWHSEDWE 487
[Close]
BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Match: A0A437DE08_ORYJA (tRNA-synt_1 domain-containing protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A437DE08_ORYJA)

HSP 1 Score: 118 bits (295), Expect = 6.350e-33
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAISRNRFWGTPIPLWCSDDYQ 204
            YKAVPSWFV VE + E+LL  N + YWVP FV+EKRF NWLRDA+DWAISRNR+WGTPIPLW SDD+Q
Sbjct:   43 YKAVPSWFVRVEHMVEKLLDCNGKCYWVPEFVREKRFGNWLRDARDWAISRNRYWGTPIPLWVSDDFQ 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1208.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XRA7_HETAK4.870e-42100.00Isoleucine--tRNA ligase n=1 Tax=Heterosigma akashi... [more]
A0A7S3GN89_9STRA9.410e-3586.76Isoleucine--tRNA ligase (Fragment) n=1 Tax=Spumell... [more]
W7U130_9STRA2.400e-3482.35Isoleucine--tRNA ligase n=2 Tax=Monodopsidaceae Ta... [more]
A0A812WIS4_9DINO9.490e-3469.70IARS1 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A482S0Q8_9ARCH1.550e-3382.35Isoleucine--tRNA ligase n=1 Tax=archaeon TaxID=190... [more]
A0A1V9YVA6_9STRA2.880e-3375.00Isoleucine--tRNA ligase n=1 Tax=Thraustotheca clav... [more]
A0A1X7SSF1_AMPQE3.780e-3375.00Isoleucine--tRNA ligase n=2 Tax=Amphimedon queensl... [more]
F0YNH0_AURAN3.930e-3384.85Isoleucine--tRNA ligase n=1 Tax=Aureococcus anopha... [more]
L1K156_GUITC5.360e-3379.41Isoleucine--tRNA ligase n=1 Tax=Guillardia theta (... [more]
A0A437DE08_ORYJA6.350e-3375.00tRNA-synt_1 domain-containing protein n=1 Tax=Oryz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1208contigH-akashiwo_Contig1208:199318..200036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041958.1
Preferred nameILERS
PFAMsAnticodon_1,tRNA-synt_1
Model size204
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0019899,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0051020,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue6.44e-34
EggNOG OGsCOG0060@1|root,KOG0434@2759|Eukaryota
EC6.1.1.5
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
Cds size204
COG categoryJ
BiGG ReactioniRC1080.CRv4_Au5_s16_g6096_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.5239658-CDS-H-akashiwo_Contig1208:199317..1994401681387120.5239658-CDS-H-akashiwo_Contig1208:199317..199440Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 199318..199440 -
1681387120.5405343-CDS-H-akashiwo_Contig1208:199955..2000361681387120.5405343-CDS-H-akashiwo_Contig1208:199955..200036Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1208 199956..200036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1208.2.1prot_H-akashiwo_Contig1208.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1208 199318..200036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1208.2.1

>prot_H-akashiwo_Contig1208.2.1 ID=prot_H-akashiwo_Contig1208.2.1|Name=mRNA_H-akashiwo_Contig1208.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
YKAVPSWFVSVEKIKERLLANNDQTYWVPAFVKEKRFHNWLRDAKDWAIS
RNRFWGTPIPLWCSDDYQ
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mRNA from alignment at H-akashiwo_Contig1208:199318..200036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1208.2.1 ID=mRNA_H-akashiwo_Contig1208.2.1|Name=mRNA_H-akashiwo_Contig1208.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=719bp|location=Sequence derived from alignment at H-akashiwo_Contig1208:199318..200036- (Heterosigma akashiwo CCMP452)
TACAAGGCCGTGCCCTCCTGGTTCGTCTCCGTGGAGAAGATCAAGGAGCG
GCTGCTCGCCAACAACGACCAGACCTACTGGGTGAGTCGACCCGCCCCCG
GGGTGGGGGGGCGAGAGCGCCGCACTTCTGCTGCCCGCAAAGACTACTTT
TACTTTGTAATATATGTTGTGTTTCTACTTATTATATATGTGTGGATGGT
GTCACCTTTTAAAGAACTTTTTTTTTACCGGGTGAAATGTGATGTTGTTG
TCGTTTTCCCCCCTTCTTCGCCAATGCCCTCCCTTTACCACTTGTACTAT
GGTTGTACTTTCAAAGGCATATAGCGTGCGTTCGTTTTTGTCTATACACA
TATATTTAATGTACCATGCTCCAATCACTCCCTTCTTGCAACACACACAA
GAGGTCGTCCAGGGCCAGGCTACAATAAATAACCAACACACAGAAGAACT
AATGCCAATATAAGTACACAGATTGAAATTCAGATAATAAATGCGCCTTG
TTGCCACCCGCCTTGTTGCCAACACTCAGCCAACATCCCCCCCCCCACCC
CCCCGCCTTCTGACGACGGGGGGGGGCTCCTCGCCCCCGGCCGCAGGTGC
CGGCCTTTGTGAAGGAGAAGCGGTTCCATAACTGGCTGCGCGACGCCAAG
GACTGGGCCATCTCGCGCAACCGGTTCTGGGGCACGCCCATCCCGCTCTG
GTGCTCGGACGACTACCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1208:199318..200036-

>mRNA_H-akashiwo_Contig1208.2.1 ID=mRNA_H-akashiwo_Contig1208.2.1|Name=mRNA_H-akashiwo_Contig1208.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig1208:199318..200036- (Heterosigma akashiwo CCMP452)
TACAAGGCCGTGCCCTCCTGGTTCGTCTCCGTGGAGAAGATCAAGGAGCG
GCTGCTCGCCAACAACGACCAGACCTACTGGGTGCCGGCCTTTGTGAAGG
AGAAGCGGTTCCATAACTGGCTGCGCGACGCCAAGGACTGGGCCATCTCG
CGCAACCGGTTCTGGGGCACGCCCATCCCGCTCTGGTGCTCGGACGACTA
CCAG
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