mRNA_H-akashiwo_Contig1205.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1205.3.1
Unique NamemRNA_H-akashiwo_Contig1205.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 334 bits (856), Expect = 5.720e-111
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 3
Query:   93 MQFLRQATXXXXXXXXXXXXTVSVGSKRYIQGIFDKPSFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEE 620
            MQFLRQAT  XXXXXXXXXXTVSVGSKRYIQGIFDKPSFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEE
Sbjct:    1 MQFLRQATRLXXXXXXXXXXTVSVGSKRYIQGIFDKPSFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEE 176          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A7S2XTK6_9STRA (Carbonic anhydrase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTK6_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.420e-65
Identity = 100/152 (65.79%), Postives = 122/152 (80.26%), Query Frame = 3
Query:  171 KRYIQGIFDKPSFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACA-NHDHGLVEHWLRNIRDINRLHAEELEAIECEER 623
            K     I+DK  F+Q+FENN+KWV +  + DPDYFK L  GQ P+YLFIGC+DSR+PA E++GL  G++FVHRNVANLVVNGDMNLL+VLQYSVEVLKV D+IVCGHY CGG+KAA     DHGL+EHWLRNI+D+ R+H +EL  IE EE+
Sbjct:   30 KELYHSIWDKSDFQQIFENNKKWVHKHLEEDPDYFKKLKMGQKPRYLFIGCSDSRVPANEIMGLSAGDVFVHRNVANLVVNGDMNLLSVLQYSVEVLKVRDVIVCGHYGCGGVKAASTIGTDHGLLEHWLRNIKDVIRVHQDELNTIEDEEK 181          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A7S1N9X7_9EUGL (Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N9X7_9EUGL)

HSP 1 Score: 215 bits (548), Expect = 5.190e-63
Identity = 97/144 (67.36%), Postives = 119/144 (82.64%), Query Frame = 3
Query:  192 FDKPSFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEER 623
            FD  + E +FENNRKW  + +K DP++FK L +GQ PKYLFIGCADSRIPAQE++G+K GE+FVHRNVANLVVN D+NLL+V+ Y+VEVL V+DIIVCGHYECGG++AA +N DHGLVEHW+RNIRD+ RLH  EL  +  E R
Sbjct:  129 FDDENLETIFENNRKWAEQMRKTDPNFFKRLKQGQEPKYLFIGCADSRIPAQELMGMKAGEMFVHRNVANLVVNNDLNLLSVIAYAVEVLHVKDIIVCGHYECGGVRAAESNKDHGLVEHWIRNIRDVVRLHRNELAVLTGEMR 272          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A0D3LHM0_9BACT (Carbonic anhydrase n=2 Tax=Cytophagales TaxID=768507 RepID=A0A0D3LHM0_9BACT)

HSP 1 Score: 198 bits (503), Expect = 1.970e-58
Identity = 87/137 (63.50%), Postives = 118/137 (86.13%), Query Frame = 3
Query:  210 EQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEE 620
            E++F+NNR+WVAEQ   DP+YFKNLAKGQSP+YLFIGC+DSR+PA  + G + G++FVHRN+AN+VV+ DMNLL+VLQY+V+VLKV D+IVCGH ECGG+ AA  +   GL+++WLRNI+D+ RL+A+EL+AI+ E+
Sbjct:    2 EEIFKNNREWVAEQLAKDPNYFKNLAKGQSPRYLFIGCSDSRVPANVITGTEAGDMFVHRNIANMVVHTDMNLLSVLQYAVDVLKVRDVIVCGHKECGGVAAAMTSQQFGLIDNWLRNIKDVIRLNADELDAIKDEK 138          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: M7MX87_9BACT (Carbonic anhydrase n=1 Tax=Cesiribacter andamanensis AMV16 TaxID=1279009 RepID=M7MX87_9BACT)

HSP 1 Score: 197 bits (502), Expect = 2.370e-58
Identity = 85/136 (62.50%), Postives = 116/136 (85.29%), Query Frame = 3
Query:  213 QLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEE 620
            ++F+NN+ WV++Q + DPDYF+ LA+GQ+P+YLFIGC+DSR+PA E+ G + GE+FVHRN+ANLVV+ DMNLL+VLQY+VEVLKV+D+IVCGH ECGG+ AA  N   GL+++WLRNI+D+ RLHA+EL +I  E+
Sbjct:    3 EIFKNNQAWVSQQLEKDPDYFRKLARGQNPRYLFIGCSDSRVPANEITGTEAGEMFVHRNIANLVVHTDMNLLSVLQYAVEVLKVQDVIVCGHKECGGVAAAMTNQQFGLIDNWLRNIKDVIRLHAQELNSIPDEQ 138          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A1X9YNK3_9BACT (Carbonic anhydrase n=1 Tax=Pontibacter actiniarum TaxID=323450 RepID=A0A1X9YNK3_9BACT)

HSP 1 Score: 197 bits (501), Expect = 5.370e-58
Identity = 89/138 (64.49%), Postives = 115/138 (83.33%), Query Frame = 3
Query:  210 EQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEER 623
            E++FENN+KWVAE+   D DYF  LAKGQ P+YLFIGC+DSR+PA E+ G   GE+FVHRN+ANLVV+ D+NLL+VLQY+VEVLKV+DIIVCGHY CGG+ AA +N   GL+++WLRNI+D+ RLH +EL +I+ EE+
Sbjct:    2 EKIFENNKKWVAEKLAQDSDYFAKLAKGQEPRYLFIGCSDSRVPAGEITGHGPGEMFVHRNIANLVVHSDVNLLSVLQYAVEVLKVKDIIVCGHYGCGGVAAAASNKQFGLIDNWLRNIKDVMRLHTQELTSIDDEEQ 139          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A1I7KGN0_9BACT (Carbonic anhydrase n=1 Tax=Pontibacter akesuensis TaxID=388950 RepID=A0A1I7KGN0_9BACT)

HSP 1 Score: 196 bits (499), Expect = 1.040e-57
Identity = 89/138 (64.49%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  210 EQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEER 623
            E++FENNRKWVAE+   DPDYFK LA GQ P+YLFIGC+DSR+PA E+ G   GE+FVHRN+AN+VV+ D+N+L+VLQY+VEVLKV+DIIVCGHY CGG+ AA  N   GL+++WLRNI+D+ RLH EE   I+ EE+
Sbjct:    2 EKIFENNRKWVAEKLAQDPDYFKKLALGQEPRYLFIGCSDSRVPAGEITGHGPGEMFVHRNIANMVVHTDVNMLSVLQYAVEVLKVKDIIVCGHYGCGGVAAAAGNKQFGLIDNWLRNIKDVIRLHEEEFTGIKDEEQ 139          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: UPI001F4FBC70 (carbonate dehydratase n=1 Tax=Pontibacter sp. E15-1 TaxID=2919918 RepID=UPI001F4FBC70)

HSP 1 Score: 196 bits (498), Expect = 1.290e-57
Identity = 87/138 (63.04%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  210 EQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEER 623
            +++FENN+KWVAE+K  D D+F  LAKGQ P+YLFIGC+DSR+PA ++ G   GE+FVHRN+ANLVV+ DMNLL+VLQY+VEVLKV+DIIVCGHY CGG+ AA  N   GL+++WLRNI+D+ RLH  E+  I+ EE+
Sbjct:    2 QKIFENNKKWVAEKKAEDKDFFVKLAKGQEPRYLFIGCSDSRVPASQITGTGPGEMFVHRNIANLVVHSDMNLLSVLQYAVEVLKVKDIIVCGHYGCGGVAAAAGNKQFGLIDNWLRNIKDVIRLHESEISGIDDEEQ 139          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A7G7GA72_9BACT (Carbonic anhydrase n=1 Tax=Adhaeribacter swui TaxID=2086471 RepID=A0A7G7GA72_9BACT)

HSP 1 Score: 195 bits (495), Expect = 5.980e-57
Identity = 86/133 (64.66%), Postives = 113/133 (84.96%), Query Frame = 3
Query:  210 EQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAI 608
            E++FENNRKWVAE+ +NDP+YFKNLAKGQ P+YLFIGC+DSR+PA  V G + GE+FVHRN+AN+VV+ D+NLL+VLQYSVEVL V+D+IVCGHY CGG++AA  +  +GL+++WLRNI+D+   H +EL  I
Sbjct:    2 EKIFENNRKWVAEKMQNDPNYFKNLAKGQKPRYLFIGCSDSRVPANNVSGTEPGEMFVHRNIANVVVHTDLNLLSVLQYSVEVLGVQDVIVCGHYGCGGVQAAMGDQQYGLIDNWLRNIKDVISNHQDELNEI 134          
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Match: A0A0E3ZG91_9BACT (Carbonic anhydrase n=2 Tax=Pontibacter TaxID=323449 RepID=A0A0E3ZG91_9BACT)

HSP 1 Score: 194 bits (493), Expect = 7.430e-57
Identity = 86/138 (62.32%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  210 EQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEER 623
            E++FENNRKWVA++   DPDYFK +A GQ P+YLFIGCADSR+PA E+ G   GE+FVHRN+AN+VV+ D+N+L+VLQY+VEVLKV DIIVCGHY CGG+ AA  N   GL+++WLRNI+D+ RLH  E+ +I+ E++
Sbjct:    2 EKIFENNRKWVADKLAEDPDYFKKMAMGQEPRYLFIGCADSRVPAGEITGHGPGEMFVHRNIANMVVHTDINMLSVLQYAVEVLKVRDIIVCGHYGCGGVAAAAGNKQFGLIDNWLRNIKDVIRLHDNEISSIDDEQQ 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1205.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9IM72_HETAK5.720e-11198.86Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A7S2XTK6_9STRA1.420e-6565.79Carbonic anhydrase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S1N9X7_9EUGL5.190e-6367.36Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica... [more]
A0A0D3LHM0_9BACT1.970e-5863.50Carbonic anhydrase n=2 Tax=Cytophagales TaxID=7685... [more]
M7MX87_9BACT2.370e-5862.50Carbonic anhydrase n=1 Tax=Cesiribacter andamanens... [more]
A0A1X9YNK3_9BACT5.370e-5864.49Carbonic anhydrase n=1 Tax=Pontibacter actiniarum ... [more]
A0A1I7KGN0_9BACT1.040e-5764.49Carbonic anhydrase n=1 Tax=Pontibacter akesuensis ... [more]
UPI001F4FBC701.290e-5763.04carbonate dehydratase n=1 Tax=Pontibacter sp. E15-... [more]
A0A7G7GA72_9BACT5.980e-5764.66Carbonic anhydrase n=1 Tax=Adhaeribacter swui TaxI... [more]
A0A0E3ZG91_9BACT7.430e-5762.32Carbonic anhydrase n=2 Tax=Pontibacter TaxID=32344... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1205contigH-akashiwo_Contig1205:212346..222311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1279009.ADICEAN_03819
PFAMsPro_CA
Model size1182
Max annot lvl976|Bacteroidetes
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categorymitochondrion
Exons10
Evalue9.55e-61
EggNOG OGsCOG0288@1|root,COG0288@2|Bacteria,4NEJT@976|Bacteroidetes,47PCQ@768503|Cytophagia
EC4.2.1.1
DescriptionReversible hydration of carbon dioxide
Cds size816
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1205.3.1prot_H-akashiwo_Contig1205.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1205 212438..222037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.2176552-UTR-H-akashiwo_Contig1205:212345..2124371681387120.2176552-UTR-H-akashiwo_Contig1205:212345..212437Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1205 212346..212437 +
1681387120.329416-UTR-H-akashiwo_Contig1205:222037..2223111681387120.329416-UTR-H-akashiwo_Contig1205:222037..222311Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1205 222038..222311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.2301762-CDS-H-akashiwo_Contig1205:212437..2124431681387120.2301762-CDS-H-akashiwo_Contig1205:212437..212443Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 212438..212443 +
1681387120.2414205-CDS-H-akashiwo_Contig1205:212606..2127471681387120.2414205-CDS-H-akashiwo_Contig1205:212606..212747Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 212607..212747 +
1681387120.251695-CDS-H-akashiwo_Contig1205:212855..2129721681387120.251695-CDS-H-akashiwo_Contig1205:212855..212972Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 212856..212972 +
1681387120.2651699-CDS-H-akashiwo_Contig1205:213109..2131571681387120.2651699-CDS-H-akashiwo_Contig1205:213109..213157Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 213110..213157 +
1681387120.2754505-CDS-H-akashiwo_Contig1205:213373..2134331681387120.2754505-CDS-H-akashiwo_Contig1205:213373..213433Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 213374..213433 +
1681387120.2852695-CDS-H-akashiwo_Contig1205:215863..2159361681387120.2852695-CDS-H-akashiwo_Contig1205:215863..215936Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 215864..215936 +
1681387120.2935956-CDS-H-akashiwo_Contig1205:216158..2162231681387120.2935956-CDS-H-akashiwo_Contig1205:216158..216223Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 216159..216223 +
1681387120.301889-CDS-H-akashiwo_Contig1205:216517..2166111681387120.301889-CDS-H-akashiwo_Contig1205:216517..216611Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 216518..216611 +
1681387120.3103402-CDS-H-akashiwo_Contig1205:218004..2181091681387120.3103402-CDS-H-akashiwo_Contig1205:218004..218109Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 218005..218109 +
1681387120.3200023-CDS-H-akashiwo_Contig1205:221930..2220371681387120.3200023-CDS-H-akashiwo_Contig1205:221930..222037Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1205 221931..222037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1205.3.1

>prot_H-akashiwo_Contig1205.3.1 ID=prot_H-akashiwo_Contig1205.3.1|Name=mRNA_H-akashiwo_Contig1205.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=272bp
MQFLRQATRLAPRLAPQLKPTVSVGSKRYIQGIFDKPSFEQLFENNRKWV
AEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRN
VANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGL
VEHWLRNIRDINRLHAEELEAIECEERGTGGWWSSTCRSSASTSTPTPSC
RRPSWPPAYRGFTVSCTTLPRGWSRSCPSTSRRRSARSSSTTVCIISRRM
LSHPQQPGKQSSSFSIITTIK*
back to top

mRNA from alignment at H-akashiwo_Contig1205:212346..222311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1205.3.1 ID=mRNA_H-akashiwo_Contig1205.3.1|Name=mRNA_H-akashiwo_Contig1205.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=9966bp|location=Sequence derived from alignment at H-akashiwo_Contig1205:212346..222311+ (Heterosigma akashiwo CCMP452)
GTAAAAAGCAGAAGCAAAGCAACTAGATCCATTCATTCTTCTTGAAATTT ACCCCACATTGCATTGCACAGCTTCCAAAGCTTGTATTGATCATGCAGGT TTGCTTTCACCTACAGCTTCCGATGGTTGACTTTGATATTTCGACAGCAT TTCAACTTTGAAGATTCAGAGCATCTTAAAAGGAGTTTTTTTTTTTTCCC CGCTTCTTGTTGCCACTCTTTTCCTTGAATACCTTTGCTGTCTTCACCTG TGGTTAACCAGTTCCTTCGCCAAGCTACCAGACTTGCTCCTAGACTTGCT CCTCAGCTCAAGCCAACTGTCTCTGTTGGCAGCAAAAGATACATTCAAGG GATTTTTGACAAGCCCAGTTTTGAACAACTCTTTGAGAACAACAGAAAAT GGGTAAGTATGTTGCCCAGGTTACTTATTTTGGTGAGCAACGCTGTTATT ATCATGTAGAACACACTTTTTTTTTTAAATTTCTTCCCTTTTTTCGCAAA TCTCAAACAGGTTGCAGAACAAAAAAAAAATGACCCTGACTACTTCAAAA ACCTTGCCAAGGGCCAAAGCCCAAAGTATCTTTTTATTGGATGTGCTGAC TCCCGCATCCCAGCCCAAGAAGTGTTGGTATGCAACTTCGTATACTGCCA TATCTAAATGGTATATAAATGAGCTGTGTTTTTTTTTGCATTTTTTTTCA TTCACGTACCCTAAAGCTAGAGGCTAAACTCTAGAGGGTTACTTTTTTAC ATGGCTTTGTGCAGGGGCTCAAGTGTGGTGAGCTGTTTGTGCATCGGAAT GTTGCCAATTTGGTAAGCTGTGGCTCGCAGTACAGTGAAAAGAAGGATCA AGTGATTCAATCTGATTTGTGCTTTTACTATATACTCAGTATAGTACATG ATGGACAAAATGTTGCATATAACGTAGCTCCTTCTCCAAAGACTTTCAAT GGGTAAACAAGGGATCTGCTGATCTGCCATAATCATATTTTTCTTCGGTC TTCTCTGGCCCTTGCCTTTTTTTTTTAGGTCGTGAATGGTGACATGAACC TGCTAGCTGTACTTCAATACTCTGTGGAGGTGCTCAAGGTAGGACCTCCG CTCTGTACATTATGATTACTTCCCATTGAGATTGGGCATAATTTTAAGCC AGTAAAATTTTAACAATTGAATCTCGAGTCGTTTGGTGACTATTTTTCAA CACAGTACCAAGCCAGCCAGCCTTAGGTTTATACATACCAGGTACCTCTC AAGTATCATAACACCTCTTTTATTGCTGGGAGTCACCAGCGGCGATAGTA ATTTTAAGATGCTGGATGATCGTGCCAAGATGATGGCCTACAAGGCTTTT GTAAGATCAAAGATTGGGTACGGCAACCTCACCTACTTGGGGGTGACCGA GGGCTGGCTATCTCGAAAAGCTTGATAGGGTTCAAAGCAGTGCTGTCTCA ATGCTCAAGGACTCGTCTGCCTTCTTTATCCCCTCGCTGGAAAGTAGGAG GCAGGCCGCAGCAGTTGGCCTCACCTGCAAGCTGCTTGATGGCCAAGGGC GGGGGGCGCTGGGTGAAGTGCAGCCAGCATTTGCTCCTCCTACAAAATGC AAGCCCCCCACAAGATTCTCCGACAGACTCGCAGCACAAAGGACGGCAGG GCCGCAGCACCCTCATCAACTGAAGGCTGCTGCAATCCGCCACACAGGGA ACAGGCGCTCACTGATGACGTACAGAAGGAGCTACAGAGCAAGAATCCCA GAGATGTGGAACAACCTCGACCATGAAACTCTTCAACAGCAGCGCATAGA GGGTTTCAACACTATCCCACTAAGAAAGCAGCTTCAACGTCTTGTCTCCC AGGCACAGAAGTCTTATTAGAGAAAGAAGAAAAAGTAAAGAAAGAAAGAA AGAAAGAAAGAAAGAAAAAAAAAGGGGGGAAAAAAATTACAAATGACATG AGCAGAGGTAGCATTATAGCCTAGCTGAACTATTTTCTCCACTTTGTGCT TATaCGTAGAAAAAAAAAAAAAAAAACAACAGCAACAACATCAGCCTCTC TCTGCCTCCCTTACCTAATGCAAAGTTGCACATATCAGCCGTACTGGTTG GTCTATGGCGACTCCTTGAACGGTCTGTGGCGAGTATAAACAATCACAGG AATACCTGCTTGGCCATGCTAGACAGATCAACCAACTGAATGAAACAATA AAGTTATTATTATTTTTTTTTTATTATTATTTTTTAACGTTCCCATGCCT CGTCACATCCTGAGGAAGGTCCTCTACTCCAGCCGACCCGCTGTCATGTT GAGCCATCTGAGCTTGTCGATGTGTTGTAGTGTTGGCGCTCGTATCATCG CGCCTTCCAATGCTAGTGAACTTCCCTTTGATGTGCCTCAGGCCACCATC CTTCGCTGACGACCTCCTTCTGTTACCGCTCTGTCAGGTCGTTGCACCCT TCCGTAAGTCGCCCCTTCCTGGGAGTTCCGGCGCTAGCTCCTTCCACGTC CCTCTCCCAGTCGCCTCCACCGTATCCAATCCTTGCCCTCCTTCGACTAC TGAGATCCGTTGATGACTGGCCCATGGTCCAAGCGTTTCGAGATATTGAC TAGACCGAAACTCGATTACCGAAATTCAATTTCTAAGATTTGAACCCGGG GCTTGAGCTTCGTCGCACGGCTAGCTTCACCACTCGAGCTTATATACTAT AGTGCGCATCTTCAGATCATGGATTTTCGTCTGTGGCTCATGGCTGGCAC TTGTGCCGGTTATGATGATGATGCTCAGATTAGTTGTGAACATGGAGGAG AAGGAGGGCAGAATGTTTTCTTAGGTATGTTGCTGTTTTCAGTTGACAGC TGAGGCGCATGAAGGAAGGATGAACTGCTGGTGGTGGTAGCCCGTCTGCC GGTAACTACTACTGCTTTTCATTTTTGTGAGCACTCCATCTTCTTCTTTC ATTCATTTCCCCATCTTCTCGCATGGTTTATCATTCACTCAGAGGCAGCC TGAAGAAGTCCGGTGGGAGAAGGAGCAGAGCCACCGGCTGTGTGGCCGTG GCTTTTAGCAGCTGAAATGCAGCAAAGTTGTCATAGAGTTATAATGATTT GAAAACCTTTGACATATTGCCTTCTTGGCAATATGGAGCTATACTCACTG ATGATTGAAGCTGTTTTTCTGTTTGAACCCAACACTCTGCAAAATAATAT TATTATCCCAAACAGTCACTGTAACCTTTTATTAAACCTTGAGGTGGTAG CTCTAACATGGCATCCACCGGGGAAAGTCCAGAAAGCTGAAGCGCCGAAT CCCACCACGGTTGTCGGATCGGACATTCACATTTGATGACACACACTATA CTCTTCCCTGCTCCTCCGTGGCCTGGACAGCCATTCAACATCACCCTATC AATCCGACGGTCGAGCGGCCAGCGCCGCTCCCCCCCGCCCCCGCACTCAC TCACTTGCGCGCGCCACCTCTCCCCTTCCTCTTCCTCCCTCCCGCCGCCC CCGCCGCCGCCGCCCCAGGTGGAAGACATCATCGTGTGCGGCCACTACGA GTGCGGCGGGATCAAGGCCGCCTGCGCCAACCACGACCACGGTCGGTGCG CCCCTCCGCCCCTCCTCCGCCATGCCAGCCGCCGCTCCCCCCCTTGCCCT ATCGCGCAGGCCGGTTGCTGCGGCCGCGCTGTATGCTGTTCCAGCGCCCG CTGTCGGCGTGAACAAACGGCAAGATCAACCACCCCGCCATCCCGACATG TTGTGTGAGAAACTGTTCTTGTGGTGATTCCTGGCGATATAATATGTACA ACAACTACAACAGGCCTGGTCGAGCACTGGCTCCGCAACATCCGGGACAT CAACCGCTTGCACGCTGAGGAGCTAGAGGTGAGTGACAGGCGTGCGCACT TCAAATAACACAGCGACAAAACCTTGTGTCGGTGGGGTGTGGCGGTTATT AGCACGTTCGGTCTGTTTTGTTTGTTCGTTGGAACCTCGGGCCTCTTGAG CTCTTCCCCCGAAAAAAAAAACGGAGACGTTGAGGAGCGGGCGGGGGGCT TGTGTTTGTGCGGGTCGCCCTGCTCGTTCGCCGGCCGGCCGTCCTGCCGC CCCCTCCTGCCGCGGCAACGGCCACCGAGGATACGGACGAGCTCCCGCCC CCGCCCCCCGccctccccgaaGGCGATCGAGTGCGAGGAGCGCGGCACCG GCGGCTGGTGGAGCTCAACGTGCAGGAGCAGTGCATCAACCTCTACGCCA ACCCCATCGTGCAGAAGTGAGTGAGGCGGCGGGCGGCGGCCCCCCCGCCC CCGCCCCCGCCCCCCCTGCCATCCCATCCCCCGGCGCTCCTCTGACGGAC GCGCGGTGTTGCTCGGTTGGTCCTCCTGTGGCTTTCCTGGCGTCGCGGGT TTGTATACGGGCAGAAAGCGATACTGTAGGACAATTGAAAGAAGGCGGGG AGCTATTCAACTGGCCTGATGATGTGATGGCACGTGTATACTACAGACAT ATGAAATATTCAAAGCCAATCCAATCAATCAGAATGACTTACATGCTGTC AATAAAATTTTGATGGATAACATTTTTCTCCATCGCGATGGGTGTTATAA TAATATATCTAATCAAGCCAAAACAGCAACGCATAGGTCGTATTGTGATG AAGAAGTATTGTAGTATTGTTTTAGCCATGCTGAGTCAGAAGTAGCACCA TTCTTATGCGCCAGAAGGAGGCAAAAAAACTTTGAGGCATATATGTAGCA GACTAATTGAGCCAAACCGAGGTTGAACACCACAAATATTATTATTTACT AATTAACCAAAAAAAATCAAAACTCAATGCATTGCTTCGCTGTTTTAGAG ATGGTATGGATATTTGGGTTGATTTTGAGTGGTAAGAAAAACCACAATGG CAGAGGCCTCTTCTGTGAGTGTGTAATTGGTCAGCTCAGCATGGCTTTCA GTCTGTAGCATGTGTATTTCTTCTTCTGCATCTATACACTTAAACATTTC CAATTGATTAAAAGACCATCGATCAGGGCATAGGATATTTCAAAAGGAAG GCGTTGGCCCAGTCTATTGCTTCACGGACACTATCAAAGCTTCAAGGCCA AGGACAAAATCACTGCTATAGTAGCGCATGAAATACAACATCATCATCAA ACTATAATGTGTGATTCCAATATTTTTAAAAGGACTGTTGTAGACCGGTT TCGGCTATTTAAAAGTCATCGTCAGTACAACTATCTATGCATTACTACTA AGAAGCATGTTGTTTTTTGATGAACTATGCAACATAAAACATGTTGTCTC TGATGATGGTTGGTCCTGGAATATATTGCTAGAATGTCATGTCAGATAGA TGGAGTTCCCACATAAAAATGCCATTGTGTCAGGATGGGTTTTAATAAAA TAATAAAAAATATACTACTTTATTAGATATAGCGTGCAGTCATTTTGATA TGCAGGCCCACCAGCATATTGTGTGCATAGTATAGTCCCACCAGTCCAGA TTATTGAGTTGGTGCGCCCAGATGGGCAGTCGGCCCAAGGTCACGCTGCT ATACAAACTGACGGCCTGGGCATGTTTTTTGCTGTACAATTTAGGAGCTT AGCCGATCCACCACTTACCACTTATACTCCCTTGCCACCGTCTGCTGTGT GCTGTCCAGGGCCCAGCTGGCCACCAGCCTACCGCGGATTCACGGTTTCG TGTACGACATTGCCGAGGGGCTGGTCAAGGAGCTGCCCATCGACTTCAAG GCGGAGATCAGCAAGTAAGTTGGACGTGTGTGTGTTTTGAACTGCCAGTT ATTCTGCTAGCACGGGATGAAAGTAAATATATGTGTATCGTGATACATGT ATGTATATGCAGCTCGTGATACAATACAATGGCCGGTGGCAAAGGAGGAC GGGTGCTTCACGGATCTGGCCATCCACTAGCTTTTGGGGTCCGACCGTAT ACTACTGTAGTGGCCCCTGGGCCCACATTGGAGCTCACTGTCACTATAAA ACTGCTGTCATCATCGCGCGCACTTCTTTGTGCCATCTTCACACATAGCC GCCACGTTTCTTTCCTCTCCTCACACAGCCAAAGAGTCGGGCAGGACAGC GGCCTATTTTTTAGCGGCATAGTTTTTTTTTTTTTTTATCGTTCTCATTT TTTTGATGAGCCGAGCCATCTCTGAGCTTGTCAATGTGATTTTTTTTTTT TAATACGTTCTCATGCCTCGTCACATCCTGAGGTCCTCTACACCAGCCGA CTGTCGTGTTAAGCCATCTCTGAGCTTGTCAATGTGAACTTTGTAGTGAT TAGCGCTCGTATCATCGCGCCTTCCAATGCTTGCGAACATCTCTTTGGTG CACCTCGGGACACCATCCTTCGCTGATGACCTCCTTCTGTTACTGCTCTG TCAGCGTGTCTACAACTATATTAAGTTGCCAAGATAGTTGACATCACCAA GTACGATCATCACACCATCTCGCTCTCCAAACAGCTCATCTGCGATCTCA AGGGCCGATCAGAGCTCCGTCTTCTGGCAAGGCAGGTAGTTCATCGCCTC TTCTGAGACTCAGATAACGGGAAACAGCTCACCATTGCTGGTCGGCAAGT GGCGGCTTTGCAGCCACAACACCACGCCACAGCCCCCTAGCAAGTTTGAA TTGGTTTCAGTGGGTACCACCAGCCATTTATCTGTGAAACGCAAATAATC TAGTAAAATGATATTTTAAAAAATATTTTTTGATGTGTCCAGGAATGCTA GGGAGATCAGCAAAAAAATCAGACATATAGATGTATGTTGCTCATCAAAG GTTTCAAATCATTACAAGATTTGACGTGGACAAATTGTTTCTAGCATACC ACCAGCCGAGGCCGGTGGCCTGGTCGTCCGTCATCAACACGCCTTGTCAG CAATGAACCAAATGACAAACTACTGCTAGAATGAGAGGTGGGAGTGAGAA CGACATCCCCCACCAACAATATCGTTCTGCCAACCTACAGCAAAAAAAAA CATCTGCTGCATGTTGCTATACCACTGCTTCTCTTTCAGCTGCTGTTCTC ACTTGGAAGAAATCAAAGTCTAACGGGAAAACGCGAATCCACCACTTTGA TTTGATAGTTTGTGCTAACTCTGAAACCAGCCAATCAGAGCAGAGAATCA GGGTCTTGTTGCCTCTACCAGAATCTGGTCCACTTACCTATACAGCTGAG CAAAGTCATTTCGAGGAGAAAGTTGTTTGGCCCCCAATTATTTAGTATTA TCGGCGAACAGCTGCTTCAAGCGTCAGTTCAAAAGTTTTGCCTTTTTTCA CGAATACTCGCGTTTCAGTATTTTCTATCCTTTTTGAAATTTTTTGCTTG ATTTTTTTTTATTTTCTTGATCTAAGTAACACTGCAGCAAGCAGAAGCAG GACAGGGATAATTTTCTGTGTTTCAACACAAGTCACTAGCTGAAGTCACT AGCTGCCGCAGTCGGCGGCAACGGCGGCAAGCAAGGAGAAGAGCTGTAAA GATTTGTAGGAACAAAAGACCTACCCACCAACTTACCTCATTCGTCTCTT CTACCTCTTGATGTTCTGCAACAAGAATGTGACTAGATTCGAACGATTCA CATTTTTTTTTTTACATTTTTTTTTAAATCTTTTTTGCATAACATTAAAA GGTAATATGTGTATTACAAAAACCGAAAGGCTTTTTAATCAAATGGAGCC CTCTCTGCAGCCCCAACCCACCTAAATACCTATGTATCGTACAGATCCCT GGGATGCCACCCCCTGTAAACTACCGTTTTCAGAAATGATTTGATTAACG TAATATTTGAACATGTATATATACCTTGGAACCTTGTTTTGATAGTATAA CTGTATGAAGCTTTTGATGGGCAACATACATCTGTGTTGTCTGATTTTTT TGCCGATCTCCTCTAGCATACCTGGACTACTAAGTATATACTCCATGCTC TTTGGAACGTACTTTTTGCTGTGTTTCTACGTTGATTTGGGGCAAAGCGC TAGATCATGGCTGGTTGTAAGCTTATCATAAATTGGTGGGATTTTGGTAA TTATGCTGCCTGTTGGCGGCATGGTGGTGGTGGTGGTATGTGTCCCGGCT CCTATAGAGATGATGTACAGGGTTGATAGGTAGATACGGGGAGCAGCACA AGTAGATCATCTCTGATGATCAACAAGTCACGTGTGCCAGGGGGATGAGG CAGGTTGTTGCTCCAACATGATTGCAACTGTAGACAAACGCGGGTTTATG ACTGCGGGATGCGGGCGGGCTGCCTCGGGCTGTCCAGGCTGTTGCTGCGG GTCGCTGCCGGTGTGAACTATGCGAGCGTACTTGGTGATTGCCATCATAC CAACGCCCCTCCACAATCATCAAGGGAGTGAGCACAGTGAACAAAGTCCC CTCCTAAGCTGCTCCAGCTTACCAAGTGAACTGTGCATTACATGTGCCAA TAGTGCAGTGGTACCAAGGAAGTACTTGTAGTACTGCAGTAGATGAGTCA CCCCTCCATTTCAGAAAACCTCCATTTCGTGATGTTAGGCCCTCCATTTC CAGACATTTCTGATGAGCATGTATATGTATTTTTATTATTTTGCATTTCT GACCGAAGAGGAAGTGAGAAGGTCGTAAAAACTGGCTGCTGTTCAAAGGT GATCAGGGCAGCAGCAACAAGAAAGAACCAGAACAGAGAACCAGAGTCTT TCGCAAATTTGGATCGTCTGTGAGGGTGTCACCAAGTAATCACGGAAGAA GAACAAGCTATCTCATAGTTTAGTAGGTGCAGTCGTCAATGCATGCATTC CAAAGTGGAAGATCCGCGTTGCCATCGCGGGACGCCTTGAGCCACCATGT GTTCGAAAGTACCAATTCATTCGCTGAAATTCCCTCGAGCTCCGTCAGCC CCTCCTTTTCGCCATTACCCTTTTTGCCGTACTCCATGGTGTAGCACAAA GTTGCCCCTCAATGAAAAATAGCTAATGCCGCCGAGGAGAAAGTCCCGTT ATCTCAACCCAGTAGCCCGAGAGAAAGTCCCGTTATCTCGATCGCCTGCG AGAGAAAGTCCCGTTATCTCAATCGCAAAGAAACTAGTCCAGGAGGAAGT CAATGTTGGCCCAATATCGTTGAGTTGGGGCAAAGCGCTATAGATCACAG CTGGTTGTAAGCTTATCACAAAGTGGTGGGATTTTGGTAATTATGCTGCC TGTTGGCGGCATGGTGGTGGTGGTGGTATGTGTCCCGGCTACTATAGAGA TGATGTACAGGGTTGATAGGTAGATACGGGGAGTAGCACAAGTAAATCAT CTCTGATGATTAACAAGTCACGTGTGCCAGGGGGATGAGGCAAGGCAGGT TGTTGCTCCAACATGATTGCAACTGTAGACAAACGTGGGTTCATGACTGT GGGATGCGGCGGGCTGCCGTGGGCTGCCTCGGGCTGTCCAGGCTGTTGCT GCGGGTCGCTGCCGGTGTGAACTGTGCGAGCGTACTTGGTGATTGCCATC ATATCAACGTTCTACGCGTTCATGTGTTTTCATTTCTTTAAATACAAAAA AAAATGTTGTTTGTTTTCCTTTTTTTTCACAATAGGATCAAGCAGCACTA CAGTCTGTATAATTTCAAGGCGGATGCTTAGTCATCCTCAACAGCCAGGG AAACAAAGCTCGTCTTTTTCCATCATAACTACTATAAAATAATAGGAGCA TGAGGGTTTAATTCTGCTTTTGTGAAATAAAGTACTACGTTGTGAGGAGC TTAAACTGCTGTTGTGGACATTGTGAAGAGCCACTACTTTTGTGAGCAGT GAGGGGCTGCTGTCGCTTTATTTGCTTGTGGTTTGCTGCATGACGCAGTT TGTGGTGTAAGAAAAGAAGAAATATTCAAGGTTTCTTCTTGTGTGGTGGG ATGCTGGTGATTAGACAGTGATGAAGAATTAAAAAGATGATATGTAATAA TGATAAATACTACTCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1205:212346..222311+

>mRNA_H-akashiwo_Contig1205.3.1 ID=mRNA_H-akashiwo_Contig1205.3.1|Name=mRNA_H-akashiwo_Contig1205.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=816bp|location=Sequence derived from alignment at H-akashiwo_Contig1205:212346..222311+ (Heterosigma akashiwo CCMP452)
ATGCAGTTCCTTCGCCAAGCTACCAGACTTGCTCCTAGACTTGCTCCTCA
GCTCAAGCCAACTGTCTCTGTTGGCAGCAAAAGATACATTCAAGGGATTT
TTGACAAGCCCAGTTTTGAACAACTCTTTGAGAACAACAGAAAATGGGTT
GCAGAACAAAAAAAAAATGACCCTGACTACTTCAAAAACCTTGCCAAGGG
CCAAAGCCCAAAGTATCTTTTTATTGGATGTGCTGACTCCCGCATCCCAG
CCCAAGAAGTGTTGGGGCTCAAGTGTGGTGAGCTGTTTGTGCATCGGAAT
GTTGCCAATTTGGTCGTGAATGGTGACATGAACCTGCTAGCTGTACTTCA
ATACTCTGTGGAGGTGCTCAAGGTGGAAGACATCATCGTGTGCGGCCACT
ACGAGTGCGGCGGGATCAAGGCCGCCTGCGCCAACCACGACCACGGCCTG
GTCGAGCACTGGCTCCGCAACATCCGGGACATCAACCGCTTGCACGCTGA
GGAGCTAGAGGCGATCGAGTGCGAGGAGCGCGGCACCGGCGGCTGGTGGA
GCTCAACGTGCAGGAGCAGTGCATCAACCTCTACGCCAACCCCATCGTGC
AGAAGGCCCAGCTGGCCACCAGCCTACCGCGGATTCACGGTTTCGTGTAC
GACATTGCCGAGGGGCTGGTCAAGGAGCTGCCCATCGACTTCAAGGCGGA
GATCAGCAAGATCAAGCAGCACTACAGTCTGTATAATTTCAAGGCGGATG
CTTAGTCATCCTCAACAGCCAGGGAAACAAAGCTCGTCTTTTTCCATCAT
AACTACTATAAAATAA
back to top