mRNA_H-akashiwo_Contig1204.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1204.2.1
Unique NamemRNA_H-akashiwo_Contig1204.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A6U1PGH0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PGH0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.170e-14
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 VTSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMNVAS 168
            VTSRD+VKHR IE E+G VSAG V S+S+L D+ +++KG  GGE+H YSDL++ AS
Sbjct:   58 VTSRDSVKHRRIEEEIGFVSAGVVQSRSILHDVASAIKGFFGGESHHYSDLLDQAS 113          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A397DM25_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DM25_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.690e-10
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 VTSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMN 159
            V++RD V+ R I  ELGVVSA  V +K++L+DI+A+L GM GGET +YS LMN
Sbjct:   42 VSTRDCVEGRQIVKELGVVSATVVRTKNILEDILAALGGMFGGETRSYSSLMN 94          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A3R6Z2M4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z2M4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.580e-10
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 VTSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMN 159
            V++RD V+ R I  ELGVVSA  V +K++L+DI+A+L GM GGET +YS LMN
Sbjct:   23 VSTRDCVEGREIIEELGVVSATVVRTKNILEDILAALGGMFGGETRSYSSLMN 75          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A418C8H5_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C8H5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.010e-9
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 VTSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMN 159
            V++RD V+ R I  ELGVVSA  V +K++L+DI+A+L GM GGET +YS LMN
Sbjct:  898 VSTRDCVEGRQIVKELGVVSATVVRTKNILEDILAALGGMFGGETRSYSSLMN 950          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A485KNN4_9STRA (Aste57867_9624 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNN4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.050e-7
Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    4 TSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMN 159
            ++RD V+ R +  E+G+V+A HV +K++L+DI+A+  G +GGET +Y+ L+N
Sbjct:   68 STRDWVEGREVIKEIGIVTASHVRTKNILEDIIAAFGGAMGGETRSYTSLLN 119          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: K3WKP2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKP2_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 5.900e-7
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    4 TSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMN 159
            T+RD +  R +  E+G+VSA  V SKS+  D+  +L G+IGGE H+Y+ LMN
Sbjct:  413 TTRDHINGRQVVEEIGMVSAAAVRSKSVFSDMYVALAGLIGGEAHSYTALMN 464          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A3R7XY82_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XY82_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 8.120e-7
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 VTSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAY 144
            V++RD V+ R I  ELGVVSA  V +K++L+DI+A+L GM GGET ++
Sbjct:   42 VSTRDCVEGRQIVKELGVVSATVVRTKNILEDILAALGGMFGGETRSH 89          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: A0A5P9CPZ9_9VIBR (UPF0145 protein FIV01_17910 n=5 Tax=Vibrio TaxID=662 RepID=A0A5P9CPZ9_9VIBR)

HSP 1 Score: 51.2 bits (121), Expect = 1.010e-6
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 TSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMNVA 165
            T+ +T+  R IET LG+V+   V SK + +DIMA LKG++GGE   Y++++  A
Sbjct:    4 TTTETIPGREIETVLGIVNGNIVQSKHVGRDIMAGLKGIVGGELKGYTEMLTEA 57          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: C9P4P3_VIBME (UPF0145 protein VIB_001261 n=7 Tax=Vibrio TaxID=662 RepID=C9P4P3_VIBME)

HSP 1 Score: 50.4 bits (119), Expect = 1.970e-6
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    4 TSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMNVASG 171
            T+ +T+  R I   LGVV    V SK + +DIMA+LKG+IGGE H Y++L+  A G
Sbjct:    4 TTTETIPGREIVDILGVVMGNVVQSKHVGRDIMANLKGIIGGELHGYTELLIEARG 59          
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Match: UPI001EFD5676 (heavy metal-binding domain-containing protein n=1 Tax=Vibrio sp. Isolate30 TaxID=2908536 RepID=UPI001EFD5676)

HSP 1 Score: 50.1 bits (118), Expect = 2.790e-6
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 TSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSDLMNVA 165
            T+ +TV  R IE  LGVV+   V SK + +DIMA LKG++GGE   Y++++  A
Sbjct:    4 TTTETVPGREIEAVLGVVNGNVVQSKHVGRDIMAGLKGIVGGELKGYTEMLTEA 57          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1204.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6U1PGH0_9STRA6.170e-1460.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A397DM25_9STRA3.690e-1058.49Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A3R6Z2M4_9STRA6.580e-1058.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A418C8H5_9STRA4.010e-958.49Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A485KNN4_9STRA1.050e-744.23Aste57867_9624 protein n=1 Tax=Aphanomyces stellat... [more]
K3WKP2_GLOUD5.900e-748.08Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7XY82_9STRA8.120e-754.17Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A5P9CPZ9_9VIBR1.010e-644.44UPF0145 protein FIV01_17910 n=5 Tax=Vibrio TaxID=6... [more]
C9P4P3_VIBME1.970e-648.21UPF0145 protein VIB_001261 n=7 Tax=Vibrio TaxID=66... [more]
UPI001EFD56762.790e-646.30heavy metal-binding domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1204contigH-akashiwo_Contig1204:61613..62080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T005534
PFAMsYbjQ_1
Model size194
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.68e-08
EggNOG OGsCOG0393@1|root,2S6YJ@2759|Eukaryota,1MB5H@121069|Pythiales
DescriptionSource PGD
Cds size192
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.0176687-CDS-H-akashiwo_Contig1204:61612..617681681387120.0176687-CDS-H-akashiwo_Contig1204:61612..61768Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1204 61613..61768 +
1681387120.0267205-CDS-H-akashiwo_Contig1204:62044..620801681387120.0267205-CDS-H-akashiwo_Contig1204:62044..62080Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1204 62045..62080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1204.2.1prot_H-akashiwo_Contig1204.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1204 61613..62080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1204.2.1

>prot_H-akashiwo_Contig1204.2.1 ID=prot_H-akashiwo_Contig1204.2.1|Name=mRNA_H-akashiwo_Contig1204.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
VTSRDTVKHRVIETELGVVSAGHVASKSLLQDIMASLKGMIGGETHAYSD
LMNVASGKRSRRSP
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mRNA from alignment at H-akashiwo_Contig1204:61613..62080+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1204.2.1 ID=mRNA_H-akashiwo_Contig1204.2.1|Name=mRNA_H-akashiwo_Contig1204.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=468bp|location=Sequence derived from alignment at H-akashiwo_Contig1204:61613..62080+ (Heterosigma akashiwo CCMP452)
GTCACTTCAAGAGATACCGTAAAGCACCGAGTCATCGAAACTGAACTCGG GGTGGTCAGCGCTGGCCACGTTGCCTCAAAGTCTCTTCTGCAGGATATTA TGGCGTCTTTAAAAGGAATGATTGGTGGGGAGACCCACGCTTACTCAGAT CTGATGGTGAGCGAACGCGATATGTGTACATCGTCATAAAAATAGAAAAT CGTGGTGGTGTTGCCAAGAAAATATCTCAAAGAACAACAACAGCCAACCC CATGCATTGCCTAGTACTCCTTACCATGTGGGGGCCTGGGGACTCTCAGA TCTACTTTTGTGGTTCTCAGGGTCATCTTGGCAAGCCTTTCCCAACCCGA CAGGCACCGGGCCCCTTCCTTCCCTGCCCCCCGGGCCCCAGCGATCGCCC CGGCCCCTCCCTGTTTCTTCGCCGCCGCCCAGAACGTGGCCTCCGGCAAG CGATCGAGAAGGTCGCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1204:61613..62080+

>mRNA_H-akashiwo_Contig1204.2.1 ID=mRNA_H-akashiwo_Contig1204.2.1|Name=mRNA_H-akashiwo_Contig1204.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig1204:61613..62080+ (Heterosigma akashiwo CCMP452)
GTCACTTCAAGAGATACCGTAAAGCACCGAGTCATCGAAACTGAACTCGG
GGTGGTCAGCGCTGGCCACGTTGCCTCAAAGTCTCTTCTGCAGGATATTA
TGGCGTCTTTAAAAGGAATGATTGGTGGGGAGACCCACGCTTACTCAGAT
CTGATGAACGTGGCCTCCGGCAAGCGATCGAGAAGGTCGCCC
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