mRNA_H-akashiwo_Contig1203.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1203.1.1
Unique NamemRNA_H-akashiwo_Contig1203.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1203contigH-akashiwo_Contig1203:4019..4362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1552123.EP57_02830
Preferred namecah
PFAMsCarb_anhydrase
Model size346
Max annot lvl91061|Bacilli
KEGG rclassRC02807
KEGG koko:K01674
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000501
EggNOG OGsCOG3338@1|root,COG3338@2|Bacteria,1V16J@1239|Firmicutes,4HA62@91061|Bacilli
EC4.2.1.1
Descriptioncarbonic anhydrase
Cds size342
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.768475-CDS-H-akashiwo_Contig1203:4018..43601681387119.768475-CDS-H-akashiwo_Contig1203:4018..4360Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1203 4019..4360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1203.1.1prot_H-akashiwo_Contig1203.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1203 4019..4360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1203.1.1

>prot_H-akashiwo_Contig1203.1.1 ID=prot_H-akashiwo_Contig1203.1.1|Name=mRNA_H-akashiwo_Contig1203.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
EVRQQRSPIDFITSYVDDSLELFKTSSGKVQGDCSSLQVVHDYETESTGE
SWRFSTEDSSCLPQSITFEGSKYTLQKLTVKTRSEHTLGGGSFEAELQLH
HTNPEKETLVLVQW
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mRNA from alignment at H-akashiwo_Contig1203:4019..4362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1203.1.1 ID=mRNA_H-akashiwo_Contig1203.1.1|Name=mRNA_H-akashiwo_Contig1203.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=344bp|location=Sequence derived from alignment at H-akashiwo_Contig1203:4019..4362+ (Heterosigma akashiwo CCMP452)
GAAGTCCGGCAACAACGGTCGCCGATAGACTTCATTACTTCTTACGTTGA
CGATAGCTTGGAGCTATTTAAGACCAGTAGTGGTAAGGTTCAAGGTGACT
GCTCCAGCCTCCAGGTTGTTCATGATTACGAAACAGAAAGCACAGGGGAA
TCCTGGAGATTTTCAACTGAAGATTCTTCTTGCCTTCCACAATCTATCAC
ATTTGAAGGATCTAAGTACACCCTTCAGAAGCTTACAGTCAAGACACGCT
CAGAGCACACTCTGGGGGGTGGATCCTTTGAAGCAGAGCTGCAACTTCAC
CACACCAACCCCGAGAAAGAGACTTTGGTTTTAGTGCAATGGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1203:4019..4362+

>mRNA_H-akashiwo_Contig1203.1.1 ID=mRNA_H-akashiwo_Contig1203.1.1|Name=mRNA_H-akashiwo_Contig1203.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1203:4019..4362+ (Heterosigma akashiwo CCMP452)
GAAGTCCGGCAACAACGGTCGCCGATAGACTTCATTACTTCTTACGTTGA
CGATAGCTTGGAGCTATTTAAGACCAGTAGTGGTAAGGTTCAAGGTGACT
GCTCCAGCCTCCAGGTTGTTCATGATTACGAAACAGAAAGCACAGGGGAA
TCCTGGAGATTTTCAACTGAAGATTCTTCTTGCCTTCCACAATCTATCAC
ATTTGAAGGATCTAAGTACACCCTTCAGAAGCTTACAGTCAAGACACGCT
CAGAGCACACTCTGGGGGGTGGATCCTTTGAAGCAGAGCTGCAACTTCAC
CACACCAACCCCGAGAAAGAGACTTTGGTTTTAGTGCAATGG
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