mRNA_H-akashiwo_Contig120.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig120.17.1
Unique NamemRNA_H-akashiwo_Contig120.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig120contigH-akashiwo_Contig120:742422..742897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.3735092-CDS-H-akashiwo_Contig120:742421..7424511681387118.3735092-CDS-H-akashiwo_Contig120:742421..742451Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 742422..742451 -
1681387118.384316-CDS-H-akashiwo_Contig120:742702..7428971681387118.384316-CDS-H-akashiwo_Contig120:742702..742897Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 742703..742897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig120.17.1prot_H-akashiwo_Contig120.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig120 742422..742897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig120.17.1

>prot_H-akashiwo_Contig120.17.1 ID=prot_H-akashiwo_Contig120.17.1|Name=mRNA_H-akashiwo_Contig120.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=75bp
VEGEGTVTDAGPEKDGDREDGGLESSQENPTVEGEGTVTNASPAKDGDQS
DQDMKARVPNMEDPWVYTPPCLCED
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mRNA from alignment at H-akashiwo_Contig120:742422..742897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig120.17.1 ID=mRNA_H-akashiwo_Contig120.17.1|Name=mRNA_H-akashiwo_Contig120.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=476bp|location=Sequence derived from alignment at H-akashiwo_Contig120:742422..742897- (Heterosigma akashiwo CCMP452)
GTAGAAGGAGAAGGCACAGTTACCGATGCAGGCCCAGAGAAAGATGGCGA
CCGTGAAGATGGTGGCCTGGAAAGCAGCCAAGAAAACCCCACCGTAGAAG
GAGAAGGCACAGTTACCAATGCAAGCCCAGCGAAAGATGGCGACCAATCT
GATCAAGATATGAAAGCCAGGGTACCGAACATGGAAGATCCTTGGGTAGG
TCAAGAGCAAACTGGGTTGGGATCTTAGCATGACCATATATATATATGTA
TATATGTTTTCAATCAATGATTGAAGGAGAAGAGATCACCTTAAAAAGTG
GTATACTATAAATGGACCACTTACTTATTCATAATAGTTGTAGTAGTGGG
TTGTATGACCCTTACACATGGTATCAGTGATGCAGGCGCTCATTTGTGAT
TCAGCGCAATTTACTTTCCACGCCAATCCAACAAACAACCACTCAGGTGT
ACACACCCCCATGCCTGTGCGAGGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig120:742422..742897-

>mRNA_H-akashiwo_Contig120.17.1 ID=mRNA_H-akashiwo_Contig120.17.1|Name=mRNA_H-akashiwo_Contig120.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=225bp|location=Sequence derived from alignment at H-akashiwo_Contig120:742422..742897- (Heterosigma akashiwo CCMP452)
GTAGAAGGAGAAGGCACAGTTACCGATGCAGGCCCAGAGAAAGATGGCGA
CCGTGAAGATGGTGGCCTGGAAAGCAGCCAAGAAAACCCCACCGTAGAAG
GAGAAGGCACAGTTACCAATGCAAGCCCAGCGAAAGATGGCGACCAATCT
GATCAAGATATGAAAGCCAGGGTACCGAACATGGAAGATCCTTGGGTGTA
CACACCCCCATGCCTGTGCGAGGAC
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