mRNA_H-akashiwo_Contig120.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig120.16.1
Unique NamemRNA_H-akashiwo_Contig120.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A6A4XZE4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZE4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.120e-7
Identity = 22/51 (43.14%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   16 ALFVLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDENG 168
            +L  LT ++PLR+VC+R+  + WF+ FI LV+V+N+VF+++ DY +  ++G
Sbjct:   26 SLGCLTVKHPLRRVCIRLVTNAWFDRFIVLVVVVNTVFMSLTDYTHAWKDG 76
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A024UTJ9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTJ9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.840e-7
Identity = 21/52 (40.38%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   13 KALFVLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDENG 168
            ++L  LT++NP+R+ C+ I   PWF+ FI L+++ N++ L++VDY    E+G
Sbjct:   87 RSLGCLTQQNPIRRFCVNIIKSPWFDRFIVLMVLANTLILSLVDYSEPWESG 138
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A6A3V5N0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V5N0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.650e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   28 LTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVD 159
            +TKEN +R+ C+R+  H +F+ FI   IVLNSV LA+VD+  VD
Sbjct:   13 VTKENVVRRRCIRLVSHAYFDRFIIFCIVLNSVVLAVVDFSVVD 56
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: G5A1T8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1T8_PHYSP)

HSP 1 Score: 50.8 bits (120), Expect = 7.150e-6
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   16 ALF-VLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDE 162
            ALF  LT+EN +R+ C+R+  H +F+ FI   IVLN+V LA+VD+  VDE
Sbjct:   41 ALFWFLTRENWVRRWCIRVVSHRYFDGFIIFCIVLNTVVLAIVDFSVVDE 90
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: UPI002026F981 (sodium channel protein type 5 subunit alpha-like n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026F981)

HSP 1 Score: 50.4 bits (119), Expect = 9.810e-6
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   16 ALFVLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDE 162
            ALF+ +  NP+R++ +RI  H WF  FIT V+++NSV +A+ D  N  +
Sbjct:  102 ALFLFSPFNPVRRLAIRISTHTWFIGFITCVVLVNSVLMAVQDLKNAQQ 150
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A6A3DF76_9STRA (Ion_trans domain-containing protein (Fragment) n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DF76_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.130e-5
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   28 LTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVD 159
            +TKEN +R+ C+R+  H +F+ FI   IVLNSV LA+VD+  VD
Sbjct:   13 VTKENVVRRRCIRLVSHAYFDRFIIFCIVLNSVVLAVVDFSVVD 56
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A6A3LKQ4_9STRA (Uncharacterized protein n=14 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LKQ4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.520e-5
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   25 VLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDE 162
            +L++EN LR+ C+R+  H +F+ FIT  IVLNSV LA  D+  VD 
Sbjct:  822 LLSRENWLRRRCIRVVSHVYFDRFITFCIVLNSVVLATTDFSVVDS 867
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A485LM16_9STRA (Aste57867_22753 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LM16_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.450e-5
Identity = 18/52 (34.62%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   13 KALFVLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDENG 168
            ++L  L+  NPLR++C+R+    WF+ FI + ++ N++ L + DY N   +G
Sbjct:   38 RSLGCLSLSNPLRRICIRLVTWRWFDRFIVVAVLFNTIILGLTDYTNAWADG 89
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BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Match: A0A6A3MV00_9STRA (Ion_trans domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MV00_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 6.700e-5
Identity = 20/51 (39.22%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   10 EKALFVLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYGNVDE 162
            ++A   L+++N +R+ C+R+  H +F  FI   I +NSV LA+VD+  VD+
Sbjct:   27 DRAFGWLSRDNRVRRACVRVTSHVYFERFIVGCIAVNSVVLALVDFSVVDD 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6A4XZE4_9STRA3.120e-743.14Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024UTJ9_9STRA5.840e-740.38Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A6A3V5N0_9STRA2.650e-652.27Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G5A1T8_PHYSP7.150e-652.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
UPI002026F9819.810e-642.86sodium channel protein type 5 subunit alpha-like n... [more]
A0A6A3DF76_9STRA1.130e-552.27Ion_trans domain-containing protein (Fragment) n=4... [more]
A0A6A3LKQ4_9STRA2.520e-550.00Uncharacterized protein n=14 Tax=Phytophthora frag... [more]
A0A485LM16_9STRA6.450e-534.62Aste57867_22753 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3MV00_9STRA6.700e-539.22Ion_trans domain-containing protein n=1 Tax=Phytop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig120contigH-akashiwo_Contig120:732934..733671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI94
PFAMsGPHH,Ion_trans
Model size169
Max annot lvl2759|Eukaryota
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue4.47e-08
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota
Descriptionmembrane depolarization during action potential
Cds size168
COG categoryU
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.7622483-CDS-H-akashiwo_Contig120:732934..7330201681387118.7622483-CDS-H-akashiwo_Contig120:732934..733020Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 732935..733020 -
1681387118.7756314-CDS-H-akashiwo_Contig120:733589..7336711681387118.7756314-CDS-H-akashiwo_Contig120:733589..733671Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 733590..733671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig120.16.1prot_H-akashiwo_Contig120.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig120 732935..733671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig120.16.1

>prot_H-akashiwo_Contig120.16.1 ID=prot_H-akashiwo_Contig120.16.1|Name=mRNA_H-akashiwo_Contig120.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
QICEKALFVLTKENPLRKVCMRIEPHPWFNNFITLVIVLNSVFLAMVDYG
NVDENG
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mRNA from alignment at H-akashiwo_Contig120:732934..733671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig120.16.1 ID=mRNA_H-akashiwo_Contig120.16.1|Name=mRNA_H-akashiwo_Contig120.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=738bp|location=Sequence derived from alignment at H-akashiwo_Contig120:732934..733671- (Heterosigma akashiwo CCMP452)
CAGATCTGCGAAAAGGCGCTCTTCGTTCTCACGAAGGAGAACCCCCTGAG
GAAGGTCTGCATGCGAATCGAGCCGCACCCCTGTGAGTCCACCGACGCTC
TTCTTGCTTCCGCGCCGTCGCCGCCCCCCTGGATCGCATTTGCCGCGCGC
GCCCCTCGCCTCGCCGCGGCCCTTTTGTCCTCCCGCCGCGCTCTACCAGC
AGACGCAAAACTAGATATACATCATGCGACGGCATCGTCCGACGTCCCCT
TATAGAAAACAACACCAAAGGCGTATGAGGACAAGTGCGAGCCAGCAGTC
GTGTACTGGTGACCTTTTATATCAAGGAGGAGCAGCATGTATAACACATT
TTCCGAGCGGTGGATATAATAATAGGTTTTAGCCAAATTAATACCTTCAA
AATACAGAGGTTGGCCCCACATCAGGGCTGATCTCAAGTTTGATTATGGG
GGCTGGCCTTGAGGTTGTGCGCTGCCTTGAAGCCTTGGAGTGGGCCCACT
GCTCGGCGCATCAGTTTGATCATTGGGTTTTACCTTTCATAATTGCTTGA
ACCTAAATATGAAAAAAATTATATACATTCGAATGGATGCATAGCGAACG
AATAGAAACTCCGTCCCGCCCGGGGCCCCCCCGGGCCCCCCGCCCGCCCA
GGGTTCAACAACTTCATCACGCTGGTGATCGTGCTCAACTCGGTCTTCCT
GGCCATGGTGGACTACGGCAACGTGGACGAGAACGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig120:732934..733671-

>mRNA_H-akashiwo_Contig120.16.1 ID=mRNA_H-akashiwo_Contig120.16.1|Name=mRNA_H-akashiwo_Contig120.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig120:732934..733671- (Heterosigma akashiwo CCMP452)
CAGATCTGCGAAAAGGCGCTCTTCGTTCTCACGAAGGAGAACCCCCTGAG
GAAGGTCTGCATGCGAATCGAGCCGCACCCCTGGTTCAACAACTTCATCA
CGCTGGTGATCGTGCTCAACTCGGTCTTCCTGGCCATGGTGGACTACGGC
AACGTGGACGAGAACGGG
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