mRNA_H-akashiwo_Contig120.15.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: UPI00077A36BF (sodium channel protein 1 brain-like isoform X1 n=3 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A36BF) HSP 1 Score: 57.4 bits (137), Expect = 9.550e-8 Identity = 26/53 (49.06%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSY 159
VL Y NL T++F++EMV+ L+ FG KEY ++ +NLFDG IV+ S++++A++Y
Sbjct: 515 VLEYCNLVFTVVFIMEMVLKLIAFGPKEYCKNKWNLFDGAIVILSVLDMALTY 567
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: UPI0009E34887 (sodium channel protein 1 brain-like isoform X1 n=3 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E34887) HSP 1 Score: 56.6 bits (135), Expect = 1.780e-7 Identity = 24/53 (45.28%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSY 159
VL Y NL T++F++EM++ L+ FG KEY ++ +NLFDG IV+ S++++ ++Y
Sbjct: 539 VLEYCNLVFTVVFIMEMILKLIAFGVKEYCKNKWNLFDGTIVILSVLDMVLTY 591
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A078AKM0_STYLE (Voltage-gated ion channel superfamily n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AKM0_STYLE) HSP 1 Score: 55.5 bits (132), Expect = 4.550e-7 Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFSGGSXXXXXXXXXXXXXXXXXKLAK 237
+L+ IN+ +++F+IEM++ L+ FGFK Y R FN+FD +V++SL++L VS+ S KLAK
Sbjct: 60 ILDEINMAFSMVFMIEMIIKLLAFGFKAYFRDPFNVFDCVVVISSLIDLFVSFLVDSSSGGAITALRGFRLIRIFKLAK 138
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: L1J8N9_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8N9_GUITC) HSP 1 Score: 55.1 bits (131), Expect = 6.200e-7 Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFS 165
VL+ +NL LTIIFVIEMV+ + GFK+Y FN+FD F+V+ S VEL + S
Sbjct: 407 VLDNVNLSLTIIFVIEMVLKWIALGFKQYFSDGFNVFDCFVVIASTVELIIGALS 461
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A7S4P8H6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P8H6_GUITH) HSP 1 Score: 55.1 bits (131), Expect = 6.230e-7 Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFS 165
VL+ +NL LTIIFVIEMV+ + GFK+Y FN+FD F+V+ S VEL + S
Sbjct: 689 VLDNVNLSLTIIFVIEMVLKWIALGFKQYFSDGFNVFDCFVVIASTVELIIGALS 743
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A6P8IQN8_ACTTE (Sodium channel protein n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQN8_ACTTE) HSP 1 Score: 54.3 bits (129), Expect = 1.160e-6 Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVE 144
+L+ +NLG T IF +EMV+ L+G GF +Y + +NLFDGFIV+ SLV+
Sbjct: 418 ILDILNLGFTAIFFLEMVIKLMGVGFVDYLKSRWNLFDGFIVIMSLVD 465
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A7S3MVQ4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3MVQ4_9SPIT) HSP 1 Score: 53.9 bits (128), Expect = 1.450e-6 Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 16 NLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVS 156
NL TIIF IE+++ L+G G + YS FNLFD FIVM SL+E+A++
Sbjct: 47 NLVFTIIFTIEVILKLIGLGVRGYSSDTFNLFDAFIVMVSLMEMALA 93
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A7S3D7G8_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D7G8_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6 Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVS 156
VL +N+ LTI+F +EM++ L+G GF+ Y FN+FDG IV+ S++EL V+
Sbjct: 572 VLETVNIVLTIVFFLEMMLKLLGLGFRGYVHDTFNIFDGIIVILSMIELIVT 623
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A3M6T7T4_POCDA (Sodium channel protein n=5 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T7T4_POCDA) HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6 Identity = 23/53 (43.40%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSY 159
VL NL T++F++EM++ L+ FG KEY ++ +NLFDG IV+ S++++ ++Y
Sbjct: 484 VLENCNLVFTVVFIMEMILKLIAFGLKEYCKNSWNLFDGTIVILSILDMVLTY 536
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: UPI00106A049F (LOW QUALITY PROTEIN: sodium channel protein 1 brain-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A049F) HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6 Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFSGGSXXXXXXXXXXXXXXXXXKLAK 237
VL+ NL TI+F++EM++ L+ G K+Y + +NLFDG IV+ S+V+L + + +GGS KLAK
Sbjct: 550 VLDNCNLTFTIVFILEMILKLIALGLKKYVKIAWNLFDGIIVLMSIVDLTMEH-AGGSDGGGLSVLRTFRLLRVFKLAK 627 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig120.15.1 >prot_H-akashiwo_Contig120.15.1 ID=prot_H-akashiwo_Contig120.15.1|Name=mRNA_H-akashiwo_Contig120.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAback to top mRNA from alignment at H-akashiwo_Contig120:721703..722114- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig120.15.1 ID=mRNA_H-akashiwo_Contig120.15.1|Name=mRNA_H-akashiwo_Contig120.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=412bp|location=Sequence derived from alignment at H-akashiwo_Contig120:721703..722114- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig120:721703..722114- >mRNA_H-akashiwo_Contig120.15.1 ID=mRNA_H-akashiwo_Contig120.15.1|Name=mRNA_H-akashiwo_Contig120.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig120:721703..722114- (Heterosigma akashiwo CCMP452)back to top |