mRNA_H-akashiwo_Contig120.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig120.15.1
Unique NamemRNA_H-akashiwo_Contig120.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: UPI00077A36BF (sodium channel protein 1 brain-like isoform X1 n=3 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A36BF)

HSP 1 Score: 57.4 bits (137), Expect = 9.550e-8
Identity = 26/53 (49.06%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSY 159
            VL Y NL  T++F++EMV+ L+ FG KEY ++ +NLFDG IV+ S++++A++Y
Sbjct:  515 VLEYCNLVFTVVFIMEMVLKLIAFGPKEYCKNKWNLFDGAIVILSVLDMALTY 567          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: UPI0009E34887 (sodium channel protein 1 brain-like isoform X1 n=3 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E34887)

HSP 1 Score: 56.6 bits (135), Expect = 1.780e-7
Identity = 24/53 (45.28%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSY 159
            VL Y NL  T++F++EM++ L+ FG KEY ++ +NLFDG IV+ S++++ ++Y
Sbjct:  539 VLEYCNLVFTVVFIMEMILKLIAFGVKEYCKNKWNLFDGTIVILSVLDMVLTY 591          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A078AKM0_STYLE (Voltage-gated ion channel superfamily n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AKM0_STYLE)

HSP 1 Score: 55.5 bits (132), Expect = 4.550e-7
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFSGGSXXXXXXXXXXXXXXXXXKLAK 237
            +L+ IN+  +++F+IEM++ L+ FGFK Y R  FN+FD  +V++SL++L VS+    S                 KLAK
Sbjct:   60 ILDEINMAFSMVFMIEMIIKLLAFGFKAYFRDPFNVFDCVVVISSLIDLFVSFLVDSSSGGAITALRGFRLIRIFKLAK 138          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: L1J8N9_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8N9_GUITC)

HSP 1 Score: 55.1 bits (131), Expect = 6.200e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFS 165
            VL+ +NL LTIIFVIEMV+  +  GFK+Y    FN+FD F+V+ S VEL +   S
Sbjct:  407 VLDNVNLSLTIIFVIEMVLKWIALGFKQYFSDGFNVFDCFVVIASTVELIIGALS 461          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A7S4P8H6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P8H6_GUITH)

HSP 1 Score: 55.1 bits (131), Expect = 6.230e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFS 165
            VL+ +NL LTIIFVIEMV+  +  GFK+Y    FN+FD F+V+ S VEL +   S
Sbjct:  689 VLDNVNLSLTIIFVIEMVLKWIALGFKQYFSDGFNVFDCFVVIASTVELIIGALS 743          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A6P8IQN8_ACTTE (Sodium channel protein n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQN8_ACTTE)

HSP 1 Score: 54.3 bits (129), Expect = 1.160e-6
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVE 144
            +L+ +NLG T IF +EMV+ L+G GF +Y +  +NLFDGFIV+ SLV+
Sbjct:  418 ILDILNLGFTAIFFLEMVIKLMGVGFVDYLKSRWNLFDGFIVIMSLVD 465          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A7S3MVQ4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3MVQ4_9SPIT)

HSP 1 Score: 53.9 bits (128), Expect = 1.450e-6
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   16 NLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVS 156
            NL  TIIF IE+++ L+G G + YS   FNLFD FIVM SL+E+A++
Sbjct:   47 NLVFTIIFTIEVILKLIGLGVRGYSSDTFNLFDAFIVMVSLMEMALA 93          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A7S3D7G8_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D7G8_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVS 156
            VL  +N+ LTI+F +EM++ L+G GF+ Y    FN+FDG IV+ S++EL V+
Sbjct:  572 VLETVNIVLTIVFFLEMMLKLLGLGFRGYVHDTFNIFDGIIVILSMIELIVT 623          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: A0A3M6T7T4_POCDA (Sodium channel protein n=5 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T7T4_POCDA)

HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6
Identity = 23/53 (43.40%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSY 159
            VL   NL  T++F++EM++ L+ FG KEY ++ +NLFDG IV+ S++++ ++Y
Sbjct:  484 VLENCNLVFTVVFIMEMILKLIAFGLKEYCKNSWNLFDGTIVILSILDMVLTY 536          
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Match: UPI00106A049F (LOW QUALITY PROTEIN: sodium channel protein 1 brain-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A049F)

HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELAVSYFSGGSXXXXXXXXXXXXXXXXXKLAK 237
            VL+  NL  TI+F++EM++ L+  G K+Y +  +NLFDG IV+ S+V+L + + +GGS                 KLAK
Sbjct:  550 VLDNCNLTFTIVFILEMILKLIALGLKKYVKIAWNLFDGIIVLMSIVDLTMEH-AGGSDGGGLSVLRTFRLLRVFKLAK 627          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00077A36BF9.550e-849.06sodium channel protein 1 brain-like isoform X1 n=3... [more]
UPI0009E348871.780e-745.28sodium channel protein 1 brain-like isoform X1 n=3... [more]
A0A078AKM0_STYLE4.550e-736.71Voltage-gated ion channel superfamily n=1 Tax=Styl... [more]
L1J8N9_GUITC6.200e-752.73Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S4P8H6_GUITH6.230e-752.73Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A6P8IQN8_ACTTE1.160e-654.17Sodium channel protein n=1 Tax=Actinia tenebrosa T... [more]
A0A7S3MVQ4_9SPIT1.450e-655.32Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A7S3D7G8_9EUKA1.590e-648.08Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A3M6T7T4_POCDA1.590e-643.40Sodium channel protein n=5 Tax=Pocilloporidae TaxI... [more]
UPI00106A049F1.590e-637.97LOW QUALITY PROTEIN: sodium channel protein 1 brai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig120contigH-akashiwo_Contig120:721703..722114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog36331.EPrPI00000014702
PFAMsGPHH,Ion_trans
Model size240
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue5.46e-08
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota,1MF0I@121069|Pythiales
DescriptionVoltage-gated Ion Channel (VIC) Superfamily. Source PGD
Cds size240
COG categoryPT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.7246451-CDS-H-akashiwo_Contig120:721702..7218501681387118.7246451-CDS-H-akashiwo_Contig120:721702..721850Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 721703..721850 -
1681387118.73456-CDS-H-akashiwo_Contig120:722022..7221141681387118.73456-CDS-H-akashiwo_Contig120:722022..722114Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 722023..722114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig120.15.1prot_H-akashiwo_Contig120.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig120 721703..722114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig120.15.1

>prot_H-akashiwo_Contig120.15.1 ID=prot_H-akashiwo_Contig120.15.1|Name=mRNA_H-akashiwo_Contig120.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
VLNYINLGLTIIFVIEMVVSLVGFGFKEYSRHVFNLFDGFIVMTSLVELA
VSYFSGGSGGGGLSAFRTLRLFRVFKLAK*
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mRNA from alignment at H-akashiwo_Contig120:721703..722114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig120.15.1 ID=mRNA_H-akashiwo_Contig120.15.1|Name=mRNA_H-akashiwo_Contig120.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=412bp|location=Sequence derived from alignment at H-akashiwo_Contig120:721703..722114- (Heterosigma akashiwo CCMP452)
GTTTTGAACTACATCAACCTTGGGCTGACTATCATTTTTGTTATTGAAAT GGTGGTCTCTCTTGTGGGCTTTGGATTCAAAGAGTATTCTCGGTAAGTTT TATCACACGGACAACTCATTTTTCGCCCACATGTAGGCAGCAGCACCACA TCGTTTACAACACAGTTTCACCGTGCCTTGGCAAACACTGAACCTCCTAC TTAGTGTTGCGAACAATACGTCTCTGCCTTGTCAATAATACGTGCCCCGC TGCGCCCCCACCAGGCACGTTTTCAACCTCTTTGACGGGTTCATTGTGAT GACTTCGCTGGTGGAGCTGGCCGTGTCCTATTTCTCCGGCGGGTCGGGGG GCGGCGGCCTCTCGGCGTTCAGGACCCTGCGGCTCTTCCGCGTATTCAAG CTCGCCAAGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig120:721703..722114-

>mRNA_H-akashiwo_Contig120.15.1 ID=mRNA_H-akashiwo_Contig120.15.1|Name=mRNA_H-akashiwo_Contig120.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig120:721703..722114- (Heterosigma akashiwo CCMP452)
GTTTTGAACTACATCAACCTTGGGCTGACTATCATTTTTGTTATTGAAAT
GGTGGTCTCTCTTGTGGGCTTTGGATTCAAAGAGTATTCTCGGCACGTTT
TCAACCTCTTTGACGGGTTCATTGTGATGACTTCGCTGGTGGAGCTGGCC
GTGTCCTATTTCTCCGGCGGGTCGGGGGGCGGCGGCCTCTCGGCGTTCAG
GACCCTGCGGCTCTTCCGCGTATTCAAGCTCGCCAAGTGA
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