mRNA_H-akashiwo_Contig120.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig120.13.1
Unique NamemRNA_H-akashiwo_Contig120.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: A0A7S4DE30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE30_HETAK)

HSP 1 Score: 126 bits (317), Expect = 1.080e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 NDAFDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            NDAFDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR
Sbjct:  200 NDAFDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 259
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BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: A0A7S2IRG1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IRG1_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.990e-7
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYA--GIDA-DTLRALR 180
            F ALF  E+ LK+FA G   G +A+FK+ WNWLDF +V V +L+++  G+ A +T+R ++
Sbjct:  158 FLALFTVEMFLKLFAAGLWSGKKAYFKQGWNWLDFVVVTVGWLEFSFKGLPAINTIRLVK 217
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BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: UPI001B888F75 (sodium channel protein type 4 subunit alpha B-like isoform X2 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888F75)

HSP 1 Score: 53.5 bits (127), Expect = 9.520e-7
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F  ++  E  +KI   G V  P  + ++PWNWLDFF+++V+YL  A  +   L ALR
Sbjct:  170 FTGIYTVEALVKINCRGFVMTPFTYLRDPWNWLDFFVISVAYLTMAFPELGNLSALR 226
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BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: V3ZMP2_LOTGI (Sodium channel protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZMP2_LOTGI)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-6
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F  ++  E  +KI + G +  P  + +EPWNWLDFF+++++YL     +   L ALR
Sbjct:  176 FTGIYTVEAIMKILSRGFILKPFTYLREPWNWLDFFVISIAYLTMFIKELGNLSALR 232
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BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: UPI0008112C91 (sodium channel protein type 2 subunit alpha-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008112C91)

HSP 1 Score: 52.4 bits (124), Expect = 2.390e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F  ++  E  LK+ A G +  P  + ++PWNWLDF ++A++YL     D   L ALR
Sbjct:  210 FTTIYTFESCLKVAARGFILEPFTYLRDPWNWLDFVVIALAYLTMGFADLGNLSALR 266
[Close]
BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: UPI001EB0217A (sodium channel protein type 4 subunit alpha B-like isoform X1 n=15 Tax=Haliotis TaxID=6452 RepID=UPI001EB0217A)

HSP 1 Score: 52.4 bits (124), Expect = 2.440e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F  ++  E S KI A G +  P  + ++PWNWLDFF+++++YL         L ALR
Sbjct:  172 FTGIYTFEASTKILARGIILTPFTYLRDPWNWLDFFVISIAYLTMWIKSLGNLSALR 228
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BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: A0A8C6P8E0_NOTFU (Sodium channel protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6P8E0_NOTFU)

HSP 1 Score: 52.0 bits (123), Expect = 3.340e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F A++  E  +K+ A G   G   F ++PWNWLDFF++ ++YL     +   L ALR
Sbjct:  175 FTAIYTGEFLVKVLARGFCVGKFTFLRDPWNWLDFFVIVLAYLTEFSKEVGNLSALR 231
[Close]
BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: A0A8C6PAB0_NOTFU (Sodium channel protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PAB0_NOTFU)

HSP 1 Score: 52.0 bits (123), Expect = 3.340e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F A++  E  +K+ A G   G   F ++PWNWLDFF++ ++YL     +   L ALR
Sbjct:  168 FTAIYTGEFLVKVLARGFCVGKFTFLRDPWNWLDFFVIVLAYLTEFSKEVGNLSALR 224
[Close]
BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: A0A8C6PAY5_NOTFU (Sodium channel protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PAY5_NOTFU)

HSP 1 Score: 52.0 bits (123), Expect = 3.340e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F A++  E  +K+ A G   G   F ++PWNWLDFF++ ++YL     +   L ALR
Sbjct:  166 FTAIYTGEFLVKVLARGFCVGKFTFLRDPWNWLDFFVIVLAYLTEFSKEVGNLSALR 222
[Close]
BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Match: A0A2C9K836_BIOGL (Sodium channel protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K836_BIOGL)

HSP 1 Score: 52.0 bits (123), Expect = 3.340e-6
Identity = 19/57 (33.33%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:   10 FDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAGIDADTLRALR 180
            F  ++  E  +K+ + G +  P  + ++PWNWLDFF+++++Y+  A      L ALR
Sbjct:  135 FLGIYTVEACIKMLSRGFILKPFTYLRDPWNWLDFFVISIAYMTMAAKQLGNLSALR 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DE30_HETAK1.080e-34100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2IRG1_9EUKA1.990e-745.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
UPI001B888F759.520e-740.35sodium channel protein type 4 subunit alpha B-like... [more]
V3ZMP2_LOTGI1.780e-636.84Sodium channel protein n=1 Tax=Lottia gigantea Tax... [more]
UPI0008112C912.390e-638.60sodium channel protein type 2 subunit alpha-like n... [more]
UPI001EB0217A2.440e-638.60sodium channel protein type 4 subunit alpha B-like... [more]
A0A8C6P8E0_NOTFU3.340e-638.60Sodium channel protein n=1 Tax=Nothobranchius furz... [more]
A0A8C6PAB0_NOTFU3.340e-638.60Sodium channel protein n=1 Tax=Nothobranchius furz... [more]
A0A8C6PAY5_NOTFU3.340e-638.60Sodium channel protein n=1 Tax=Nothobranchius furz... [more]
A0A2C9K836_BIOGL3.340e-633.33Sodium channel protein n=1 Tax=Biomphalaria glabra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig120contigH-akashiwo_Contig120:715870..716591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8049.ENSGMOP00000003144
Preferred nameSCN4A
PFAMsIon_trans,Na_trans_assoc
Model size182
Max annot lvl33208|Metazoa
KEGG koko:K04837
KEGG TC1.A.1.10.4
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0001518,GO:0003008,GO:0003012,GO:0003674,GO:0005215,GO:0005216,GO:0005248,GO:0005261,GO:0005272,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006836,GO:0006936,GO:0007154,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015081,GO:0015267,GO:0015318,GO:0015672,GO:0015695,GO:0015696,GO:0015871,GO:0016020,GO:0016021,GO:0019226,GO:0019228,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0031224,GO:0031226,GO:0032501,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0034706,GO:0035637,GO:0035725,GO:0042391,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0050877,GO:0051179,GO:0051234,GO:0051899,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071944,GO:0086010,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:1902495,GO:1990351
Exons2
Evalue5.47e-07
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota,38BYK@33154|Opisthokonta,3B9I5@33208|Metazoa,3CRAE@33213|Bilateria,4829E@7711|Chordata,48XM5@7742|Vertebrata,49ZC2@7898|Actinopterygii
Descriptionmediates the voltage-dependent sodium ion permeability of excitable membranes
Cds size180
COG categoryP
BRITEko00000,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.6807718-CDS-H-akashiwo_Contig120:715871..7159621681387118.6807718-CDS-H-akashiwo_Contig120:715871..715962Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 715872..715962 -
1681387118.69608-CDS-H-akashiwo_Contig120:716502..7165911681387118.69608-CDS-H-akashiwo_Contig120:716502..716591Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 716503..716591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig120.13.1prot_H-akashiwo_Contig120.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig120 715872..716591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig120.13.1

>prot_H-akashiwo_Contig120.13.1 ID=prot_H-akashiwo_Contig120.13.1|Name=mRNA_H-akashiwo_Contig120.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
NDAFDALFLTEVSLKIFAYGAVRGPEAFFKEPWNWLDFFIVAVSYLQYAG
IDADTLRALR
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mRNA from alignment at H-akashiwo_Contig120:715870..716591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig120.13.1 ID=mRNA_H-akashiwo_Contig120.13.1|Name=mRNA_H-akashiwo_Contig120.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=722bp|location=Sequence derived from alignment at H-akashiwo_Contig120:715870..716591- (Heterosigma akashiwo CCMP452)
AACGACGCGTTCGACGCGCTCTTCCTGACGGAGGTCAGCCTGAAGATCTT
CGCTTATGGCGCTGTGCGCGGGCCCGAGGCTTTCTTCAAGTGAGCCGTGC
CCCCGGCCCTCCCTCCCCCCGCCCTTCGCCCGCCTCTCCCATCCCTTCTG
CTGCTGCTGCCGCCGCCGCCGCCGCCGCTTCTGCCCCTCCTGGTTCGGGC
CATTAGTGCGGTTGCTCCTTCCCTGGACTGGCTCCTTCTTCGCTGCTGGT
AATTTCGTTGGCCAAATCAGGGCGTTTAGACTTGAGAGGGTTTGAGGTGA
GCAGGTACATGTACAAATTGGTCGACGGCGAAGATGACGTTCCAGAATAC
TGTGTATCAAAGCCGAGGTTCTAATAGATATATACACCCGCTTGAGACTT
TCAAGGCGCGTTCCATGTACCATGCAGAAGTTGAGACTGCTAAAGGCTCC
CTGCACCACGCAAGCGTTCCACCACACCCATACCGGGCGCCCCCTCCCCC
CAAAAGACAGGGGGAAAACCGCGCGCGCTCACCGACCGGCGTTCTCTGAC
GGGCCGGGGCCCTTCACCTGGAGCACACACACACACACCCGCGCGCGCTT
TCCCGGCCTTCCTTCCCCCCGCGCCCCAGAGAGCCGTGGAACTGGCTGGA
CTTCTTCATCGTGGCGGTCTCGTACCTGCAGTACGCCGGCATCGACGCGG
ACACCCTGCGCGCACTGAGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig120:715870..716591-

>mRNA_H-akashiwo_Contig120.13.1 ID=mRNA_H-akashiwo_Contig120.13.1|Name=mRNA_H-akashiwo_Contig120.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig120:715870..716591- (Heterosigma akashiwo CCMP452)
AACGACGCGTTCGACGCGCTCTTCCTGACGGAGGTCAGCCTGAAGATCTT
CGCTTATGGCGCTGTGCGCGGGCCCGAGGCTTTCTTCAAAGAGCCGTGGA
ACTGGCTGGACTTCTTCATCGTGGCGGTCTCGTACCTGCAGTACGCCGGC
ATCGACGCGGACACCCTGCGCGCACTGAGG
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