mRNA_H-akashiwo_Contig12.62.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.62.1
Unique NamemRNA_H-akashiwo_Contig12.62.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A6V1PZF2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PZF2_HETAK)

HSP 1 Score: 427 bits (1098), Expect = 1.060e-150
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 3 
Query:   15 MLSSLKCQPMLAAQASRAFLKPSCVRVAQFHVGKRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            MLSSLKCQPMLAAQASRAFLKPSCVRVAQFHVGKRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK
Sbjct:    1 MLSSLKCQPMLAAQASRAFLKPSCVRVAQFHVGKRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 211
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: D8LIF1_ECTSI (NUO10 homolog, NADH dehydrogenase (Ubiquinone) subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIF1_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 1.540e-107
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 3 
Query:  114 KRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            K   S+L +A++VD LM  + +  VEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK+K NKSL LRLKK
Sbjct:   49 KPTSSELTRAENVDQLMQ-QGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 225
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A7S2BKW3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKW3_9STRA)

HSP 1 Score: 314 bits (804), Expect = 4.480e-106
Identity = 153/175 (87.43%), Postives = 162/175 (92.57%), Query Frame = 3 
Query:  123 ESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            +SDL    SV+ LM    Q  VE+VV+KVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYD+ERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKKVK NKSL L+L+K
Sbjct:   28 KSDLTARSSVNSLMEDP-QGGVEYVVAKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKANKSLLLKLRK 201
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A8J2SH29_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH29_9STRA)

HSP 1 Score: 313 bits (802), Expect = 1.320e-105
Identity = 150/174 (86.21%), Postives = 162/174 (93.10%), Query Frame = 3 
Query:  126 SDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            S L++  SVD  + +  +N VEF+V+KVD+LVNWARKGSLWPMTFGLACCAVEMMHSA SRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWV+SMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPTAEALLYGLLQLQKKVK+N+SL LRL+K
Sbjct:   39 SSLQETKSVDDFLQAPPENKVEFMVTKVDELVNWARKGSLWPMTFGLACCAVEMMHSATSRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKSNRSLLLRLRK 212
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A4D9DG66_9STRA (Oxidored_q6 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG66_9STRA)

HSP 1 Score: 312 bits (800), Expect = 4.480e-105
Identity = 156/192 (81.25%), Postives = 167/192 (86.98%), Query Frame = 3 
Query:   81 SCVRVAQFHVGKRDESDL---KQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            +C+R  + H   R        K A  VD L+ +K  N VE+VVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAA+RYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKKVK NK L L+L+K
Sbjct:   40 TCIR--ELHASGRASKSTEVTKAAGGVDQLLKTK--NGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A7R9W5P5_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9W5P5_9STRA)

HSP 1 Score: 311 bits (797), Expect = 7.360e-105
Identity = 151/178 (84.83%), Postives = 162/178 (91.01%), Query Frame = 3 
Query:  126 SDLKQADSVDGLMNSKA----QNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            S L + D VD ++        +N+VE+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL+GLLQLQKK+K NKSL LRL+K
Sbjct:   34 SSLTRLDGVDEILTGTGGVPVENNVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLFGLLQLQKKIKGNKSLLLRLRK 211
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A7S3V2E9_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V2E9_9STRA)

HSP 1 Score: 311 bits (798), Expect = 7.590e-105
Identity = 147/181 (81.22%), Postives = 167/181 (92.27%), Query Frame = 3 
Query:  105 HVGKRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            H       D   A+S+D L++ K ++ VEFVVSK+DD+VNWARKGS+WPMTFGLACCAVEMMH+AASRYDM+RFG+VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWV+SMGSCANGGGYYHYSY+VVRGCDRIVPVD+YVPGCPPTAEALLYGLLQLQKKVK+NK+LS++L+K
Sbjct:   43 HTSSPARKDQGGAESLDSLLH-KGKDGVEFVVSKLDDVVNWARKGSMWPMTFGLACCAVEMMHTAASRYDMDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALLYGLLQLQKKVKSNKALSIKLRK 222
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A7S3V7M6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7M6_9STRA)

HSP 1 Score: 311 bits (797), Expect = 7.890e-105
Identity = 151/179 (84.36%), Postives = 162/179 (90.50%), Query Frame = 3 
Query:  126 SDLKQADSVDGLMNSKA-----QNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            S + + DSVD ++ S        N VE+ VSKVDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL+GLLQLQKK+K NK+L L+L+K
Sbjct:   35 SSINRLDSVDQMLTSHGGSVPTNNKVEYAVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLFGLLQLQKKIKGNKALLLKLRK 213
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: B8C955_THAPS (Oxidored_q6 domain-containing protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C955_THAPS)

HSP 1 Score: 311 bits (797), Expect = 8.760e-105
Identity = 152/178 (85.39%), Postives = 160/178 (89.89%), Query Frame = 3 
Query:  126 SDLKQADSVDGLMNSKA----QNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            S L + D VD L+         N VE+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK+K NKSL L+L+K
Sbjct:   39 SSLTRLDGVDELLTGTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 216
[Close]
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Match: A0A7S2RSY8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSY8_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.890e-104
Identity = 156/212 (73.58%), Postives = 178/212 (83.96%), Query Frame = 3 
Query:   15 MLSSLKCQPMLAAQASRAFLK-PSCVRVAQFHVGKRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 647
            ML+  +  P L A+   A    P+ VR+          ++L Q ++V+ LM +  +   EFVV+KVDDLVNWAR+GSLWPMTFGLACCAVEMMH+AASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKKVK++K+L L+++K
Sbjct:    8 MLALARFAPRLVARERVAVRHTPAMVRMVHSTGPTEKSTELTQHNNVNSLMENP-RGGAEFVVAKVDDLVNWARRGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKSDKTLLLKVRK 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1PZF2_HETAK1.060e-150100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LIF1_ECTSI1.540e-10788.20NUO10 homolog, NADH dehydrogenase (Ubiquinone) sub... [more]
A0A7S2BKW3_9STRA4.480e-10687.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SH29_9STRA1.320e-10586.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9DG66_9STRA4.480e-10581.25Oxidored_q6 domain-containing protein n=2 Tax=Mono... [more]
A0A7R9W5P5_9STRA7.360e-10584.83Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S3V2E9_9STRA7.590e-10581.22Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A7S3V7M6_9STRA7.890e-10584.36Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8C955_THAPS8.760e-10585.39Oxidored_q6 domain-containing protein n=2 Tax=Thal... [more]
A0A7S2RSY8_9STRA1.890e-10473.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:2743925..2744814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIF1
Preferred nameNUO10
PFAMsOxidored_q6
Model size755
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03940,ko:K16911
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko01110,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map01110,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categorymitochondrion
GOsGO:0000302,GO:0002118,GO:0002121,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0007610,GO:0008150,GO:0008152,GO:0008270,GO:0008340,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048856,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051704,GO:0051705,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099174,GO:1901135,GO:1901360,GO:1901564,GO:1901700,GO:1902494,GO:1990204,GO:2000331
Exons2
Evalue1.58e-108
EggNOG OGsCOG0377@1|root,KOG1687@2759|Eukaryota
Ec32 ortholog descriptionNUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10
Ec32 orthologEc-18_003900.1
EC1.6.5.3,1.6.99.3,3.6.4.13
Descriptionquinone binding
Cds size636
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387117.0042536-UTR-H-akashiwo_Contig12:2743924..27439381681387117.0042536-UTR-H-akashiwo_Contig12:2743924..2743938Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 2743925..2743938 +
1681387117.036364-UTR-H-akashiwo_Contig12:2744709..27448141681387117.036364-UTR-H-akashiwo_Contig12:2744709..2744814Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 2744710..2744814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387117.0171282-CDS-H-akashiwo_Contig12:2743938..27443661681387117.0171282-CDS-H-akashiwo_Contig12:2743938..2744366Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 2743939..2744366 +
1681387117.028169-CDS-H-akashiwo_Contig12:2744501..27447091681387117.028169-CDS-H-akashiwo_Contig12:2744501..2744709Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 2744502..2744709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.62.1prot_H-akashiwo_Contig12.62.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 2743939..2744709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.62.1

>prot_H-akashiwo_Contig12.62.1 ID=prot_H-akashiwo_Contig12.62.1|Name=mRNA_H-akashiwo_Contig12.62.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=212bp
MLSSLKCQPMLAAQASRAFLKPSCVRVAQFHVGKRDESDLKQADSVDGLM
NSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYD
MERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGS
CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVK
TNKSLSLRLKK*
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mRNA from alignment at H-akashiwo_Contig12:2743925..2744814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.62.1 ID=mRNA_H-akashiwo_Contig12.62.1|Name=mRNA_H-akashiwo_Contig12.62.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=890bp|location=Sequence derived from alignment at H-akashiwo_Contig12:2743925..2744814+ (Heterosigma akashiwo CCMP452)
CTGACACTTTCATCATGCTTTCTTCACTCAAGTGCCAGCCGATGCTTGCT
GCTCAAGCCTCTAGAGCTTTTCTGAAGCCATCATGCGTGAGGGTAGCTCA
ATTTCATGTTGGCAAGCGCGATGAGTCGGATTTGAAGCAAGCTGACAGCG
TGGACGGCCTGATGAACAGCAAAGCTCAAAATAGCGTGGAGTTTGTCGTT
TCCAAGGTCGATGATCTTGTGAACTGGGCACGTAAAGGTTCTCTTTGGCC
AATGACGTTCGGTCTTGCTTGCTGCGCAGTCGAAATGATGCACTCAGCCG
CTTCCCGTTACGATATGGAGCGTTTCGGCATGGTCTTTCGGGCTTCTCCT
CGCCAGTCAGATGTGATGATTGTCGCAGGGACCCTTACAAACAAAATGGC
CCCTGCCCTCCGTAAAGTTTACGACCAGATGCCCGAGCCGCGGTGAGTAA
ATAGTAAATCCAAACCTACACGTTAAAAATGAGGATGTCTGTTTGTGTAC
ATACAAGAAGTGGTTCTGTCTCGTCTCCTGGAACGCTCAAACTTTCCCCC
TTCCTCGCCGCCGGCGTTTCTCCCCAGGTGGGTCGTGTCCATGGGCTCCT
GCGCCAACGGCGGCGGCTACTACCACTACTCCTACTCGGTCGTGCGCGGC
TGCGACCGCATCGTGCCGGTGGACATCTACGTGCCCGGCTGCCCGCCCAC
CGCGGAGGCCCTGCTGTACGGGCTGCTGCAGCTGCAGAAGAAGGTGAAGA
CCAACAAGTCGCTGAGCCTGCGCCTGAAGAAGTAACCTGAAGAAGTAACG
AGGCCGGCTGGCGGCGGCGGCGGCAAGGGGCCCGGCCCGGGCCGCCGAGG
GGGCAGCCACGGGTCGGCCTGGCCTGCGGCGGCGGAGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:2743925..2744814+

>mRNA_H-akashiwo_Contig12.62.1 ID=mRNA_H-akashiwo_Contig12.62.1|Name=mRNA_H-akashiwo_Contig12.62.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=636bp|location=Sequence derived from alignment at H-akashiwo_Contig12:2743925..2744814+ (Heterosigma akashiwo CCMP452)
ATGCTTTCTTCACTCAAGTGCCAGCCGATGCTTGCTGCTCAAGCCTCTAG
AGCTTTTCTGAAGCCATCATGCGTGAGGGTAGCTCAATTTCATGTTGGCA
AGCGCGATGAGTCGGATTTGAAGCAAGCTGACAGCGTGGACGGCCTGATG
AACAGCAAAGCTCAAAATAGCGTGGAGTTTGTCGTTTCCAAGGTCGATGA
TCTTGTGAACTGGGCACGTAAAGGTTCTCTTTGGCCAATGACGTTCGGTC
TTGCTTGCTGCGCAGTCGAAATGATGCACTCAGCCGCTTCCCGTTACGAT
ATGGAGCGTTTCGGCATGGTCTTTCGGGCTTCTCCTCGCCAGTCAGATGT
GATGATTGTCGCAGGGACCCTTACAAACAAAATGGCCCCTGCCCTCCGTA
AAGTTTACGACCAGATGCCCGAGCCGCGGTGGGTCGTGTCCATGGGCTCC
TGCGCCAACGGCGGCGGCTACTACCACTACTCCTACTCGGTCGTGCGCGG
CTGCGACCGCATCGTGCCGGTGGACATCTACGTGCCCGGCTGCCCGCCCA
CCGCGGAGGCCCTGCTGTACGGGCTGCTGCAGCTGCAGAAGAAGGTGAAG
ACCAACAAGTCGCTGAGCCTGCGCCTGAAGAAGTAA
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