mRNA_H-akashiwo_Contig12.41.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.41.1
Unique NamemRNA_H-akashiwo_Contig12.41.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:1671238..1671853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size617
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.5704396-UTR-H-akashiwo_Contig12:1671237..16713191681387115.5704396-UTR-H-akashiwo_Contig12:1671237..1671319Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 1671238..1671319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.5813272-CDS-H-akashiwo_Contig12:1671319..16718531681387115.5813272-CDS-H-akashiwo_Contig12:1671319..1671853Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1671320..1671853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.41.1prot_H-akashiwo_Contig12.41.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 1671320..1671853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.41.1

>prot_H-akashiwo_Contig12.41.1 ID=prot_H-akashiwo_Contig12.41.1|Name=mRNA_H-akashiwo_Contig12.41.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=178bp
MATQMPEDPAPWDDRSRFRSRSCTKNPEEAFKKKPQIRTKYAPRLLRAWT
SAGNVKKVQHYEEENGNTAVVNLGSSFALLSKLEVFHRGFVDMPKGTLNR
RKRILAEIRGTVLILCQPSSKSANHYQPAIIVDMDCIELASIRRKGKRGI
LIEAPSEDRTTIRFYARDSAARELWLDR
back to top

mRNA from alignment at H-akashiwo_Contig12:1671238..1671853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.41.1 ID=mRNA_H-akashiwo_Contig12.41.1|Name=mRNA_H-akashiwo_Contig12.41.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=616bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1671238..1671853+ (Heterosigma akashiwo CCMP452)
GGCCGCCACAAAAAACACACACATACAAAACGAAGGCTGCTGCGAAGAAG
GGCGGCATAAAAGCAAGTGCGTTGCTGCCTGAATGGCCACGCAGATGCCT
GAAGATCCTGCTCCGTGGGATGATCGCTCAAGGTTCAGGTCGCGTTCCTG
CACCAAGAATCCAGAAGAGGCTTTCAAGAAGAAGCCGCAGATTCGCACGA
AATATGCGCCCCGGCTGCTGAGAGCCTGGACCTCTGCTGGCAACGTCAAA
AAAGTTCAGCATTATGAGGAAGAAAATGGAAATACTGCAGTCGTGAATCT
GGGCAGTTCCTTTGCCCTCCTGTCAAAGCTCGAGGTGTTCCACCGAGGGT
TTGTTGACATGCCCAAAGGAACCCTGAACCGGCGAAAAAGAATACTTGCA
GAGATCCGCGGCACGGTTTTGATTCTATGTCAACCCTCTTCAAAATCAGC
CAATCACTATCAGCCCGCGATAATAGTCGATATGGATTGCATTGAATTAG
CGAGCATCAGGAGGAAGGGCAAAAGGGGGATCTTAATTGAGGCGCCGTCG
GAGGACCGCACGACCATCCGGTTCTACGCCCGGGACTCGGCGGCGCGGGA
GCTGTGGCTGGACCGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig12:1671238..1671853+

>mRNA_H-akashiwo_Contig12.41.1 ID=mRNA_H-akashiwo_Contig12.41.1|Name=mRNA_H-akashiwo_Contig12.41.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1671238..1671853+ (Heterosigma akashiwo CCMP452)
ATGGCCACGCAGATGCCTGAAGATCCTGCTCCGTGGGATGATCGCTCAAG
GTTCAGGTCGCGTTCCTGCACCAAGAATCCAGAAGAGGCTTTCAAGAAGA
AGCCGCAGATTCGCACGAAATATGCGCCCCGGCTGCTGAGAGCCTGGACC
TCTGCTGGCAACGTCAAAAAAGTTCAGCATTATGAGGAAGAAAATGGAAA
TACTGCAGTCGTGAATCTGGGCAGTTCCTTTGCCCTCCTGTCAAAGCTCG
AGGTGTTCCACCGAGGGTTTGTTGACATGCCCAAAGGAACCCTGAACCGG
CGAAAAAGAATACTTGCAGAGATCCGCGGCACGGTTTTGATTCTATGTCA
ACCCTCTTCAAAATCAGCCAATCACTATCAGCCCGCGATAATAGTCGATA
TGGATTGCATTGAATTAGCGAGCATCAGGAGGAAGGGCAAAAGGGGGATC
TTAATTGAGGCGCCGTCGGAGGACCGCACGACCATCCGGTTCTACGCCCG
GGACTCGGCGGCGCGGGAGCTGTGGCTGGACCGG
back to top