mRNA_H-akashiwo_Contig12.33.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.33.1
Unique NamemRNA_H-akashiwo_Contig12.33.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.33.1 vs. uniprot
Match: A0A7S3YF91_HETAK (1-alkyl-2-acetylglycerophosphocholine esterase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF91_HETAK)

HSP 1 Score: 177 bits (450), Expect = 9.720e-55
Identity = 97/102 (95.10%), Postives = 97/102 (95.10%), Query Frame = 2 
Query:    2 AFVQTLKKMDAQPQVVQATLVESQHQNFSDIALFAPDVGRWLGANGAPEPAALLRACNVFTAAFLRQAAAAMAEGEKGKSGXXXXXXXXXXLLPGGRHFEYM 307
            AFVQTLKKMDAQPQVVQATLVESQHQNFSDIALFAPDVGRWLGANGAPEPAALLRACNVFTAAFLRQAAAAMAEGEKGKSG XXXXX    LLPGGRHFEYM
Sbjct:   52 AFVQTLKKMDAQPQVVQATLVESQHQNFSDIALFAPDVGRWLGANGAPEPAALLRACNVFTAAFLRQAAAAMAEGEKGKSGGXXXXXAGAALLPGGRHFEYM 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YF91_HETAK9.720e-5595.101-alkyl-2-acetylglycerophosphocholine esterase n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:1323038..1325062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000023632
PFAMsPAF-AH_p_II
Model size428
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.00015
EggNOG OGsCOG4188@1|root,KOG3847@2759|Eukaryota,1MGDP@121069|Pythiales
DescriptionChlorophyllase enzyme
Cds size285
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.8847573-UTR-H-akashiwo_Contig12:1323037..13230621681387114.8847573-UTR-H-akashiwo_Contig12:1323037..1323062Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 1323038..1323062 +
1681387114.913751-UTR-H-akashiwo_Contig12:1324944..13250621681387114.913751-UTR-H-akashiwo_Contig12:1324944..1325062Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 1324945..1325062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.8970063-CDS-H-akashiwo_Contig12:1323062..13231491681387114.8970063-CDS-H-akashiwo_Contig12:1323062..1323149Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1323063..1323149 +
1681387114.9054098-CDS-H-akashiwo_Contig12:1324746..13249441681387114.9054098-CDS-H-akashiwo_Contig12:1324746..1324944Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1324747..1324944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.33.1prot_H-akashiwo_Contig12.33.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 1323063..1324944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.33.1

>prot_H-akashiwo_Contig12.33.1 ID=prot_H-akashiwo_Contig12.33.1|Name=mRNA_H-akashiwo_Contig12.33.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
MDAQPQVVQATLVESQHQNFSDIALFAPDVGRWLGANGAPEPAALLRACN
VFTAAFLRQAAAAMAEGEKGKSGGGRRAAAGAALLPGGRHFEYM*
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mRNA from alignment at H-akashiwo_Contig12:1323038..1325062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.33.1 ID=mRNA_H-akashiwo_Contig12.33.1|Name=mRNA_H-akashiwo_Contig12.33.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2025bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1323038..1325062+ (Heterosigma akashiwo CCMP452)
TGCATTTGTTCAGACTTTAAAGAAAATGGATGCTCAACCGCAAGTTGTAC
AAGCTACCCTTGTAGAATCTCAACATCAAAACTTCTCAGACATAGCTCTG
TTTGCTCCAGATGTGAGTGCTCTCAAAAAAGGCGTCTACTTTTGTCTATA
TATACATATGTATGATACAAACATATTACCTCTCCAGTCCCTCTTGGGGA
CTAAGGTACTCAAAGGATTAATTTGTGGTATATATATGAAGCTTTTCAAG
CAATCTATTTTAAAACTTTTTGAATCTCATTTTATACGATCATCTCCCAA
TGATTTTCGGGAATACTTTTCTGTCCCGGATGCGGGACTAAGACAATATT
CACGGTGAGAGATAGGAAAAAAGTCAATACTTACATTGGGGACTAACAGT
TATTCTACAGTAGCTACCACTATATGCTGTGTACCTATTTGATGAAGAGG
AAGAAGATTCAAAAGATTTTAAATTAAGAAGAGGGAGAAGTTTTGTGCAA
ACCCAGCAGCAGCTACTGAGTTTGAAAATCCCACAGGGAGGTTAAACTTC
ACCAAATTAAATATACACATCCTGTTTCAATTATTAATAATATAATAAAT
CATGAAAATACAAATAACAATACAACAACCTTTTCAGGACACTTTTCGTG
TTTATTCCCCCCTCACTTTGTGAATGCAATCTATTGCAGTTGTTTATATT
TTGTACTGCTATACAACACAAGTTCTCGAAGGCTCTCTGTCTTCCCCCCT
TGCTTCTCTGTTGTGCCTGAAACCTACTGTGAACAGTTGTGTGTGCTTAC
GATCAGTGAGGTGAGACTCTAACAAAAACCGCCTGTCCATCACCAACAGA
GGGTGGAATCAAGGTAGGCCGAGAGTGACATAAGCAACCAGCAGTAGGCA
GATTCTTCGTGCTCTGCGGTAGGCGAGGATGCAATGTCGTTGTGGTTGGT
TTACGATAGCAGCAAAAGCACAAAAGCAGCTTTACAGAAAAGGCAGAACT
TTGAACTCGACTTCAGCAATAGGAGATCCAGAACACAGTTCCTCAGTGGC
ATAGGCCCTAAACAGTGACTGCAGCTCTGAAAATACCTGGTGCCGTGGTG
GCCTCGAGGCACTGCGTTGCTCAGACACAGCTACAAGGTGTGGCCTTCGG
CAATGGTCCCAAATCACCAGGTGGTTATTAGAACGTGTTCTCCATCAGTC
GCACTTCGGTGACAATGAATCAGGGGTGACGAGCCCAAAAGATAACCGCA
CACTCCAATAACGGGCTGCCGCACAGACAAAGTCCAGTCAAGAGTGAGCC
CATGACCAATAGACTTTGTGTGCAGCCCAGTGCAAAGGCCAAGGCCCTGG
AGCAGAGCTCCTAGGCTGAGAGGAAAGTGGTTGAAGATCTTTTAATTCAT
GGTAGGTAATGTTGAGAACAAACATGAGAGATGATCACGACTACTGTACT
ACTCCAGCAGCAATCCAGCATGGTGGTGGTGGTTCACAACATCAGAAGCA
GCAGCCACGTACTGGCTGATGCACGTGTACAAAAACAACCAAGCTATATA
TGCTTCACAACACTGAGTCATCATGGCATCGATCATCAATTCCGTAGGTT
CAGCCCAACAGTAGAATGCCATGGGCATAGTAGGGAAACGTGAGTGCTTG
AACACTTGAGAGCGGATATGATGTTGTATATATATTGTTGTTCTTCCACC
TGGCGCCAGGTGGGCCGGTGGCTGGGGGCTAACGGGGCCCCGGAACCGGC
CGCGCTCCTGCGGGCCTGCAACGTCTTCACGGCGGCCTTCCTCCGCCAGG
CGGCGGCGGCGATGGCGGAAGGAGAGAAGGGGAAGAGCGGCGGCGGCAGG
CGAGCCGCGGCGGGGGCGGCGCTGCTGCCGGGAGGGCGGCACTTTGAGTA
CATGTGATGATGACAATGGAGGAGAAGAAGAAGAAGGTGGAGGAAAGATG
CTATGATGGGCTCAGGGAAGCAGGAGAAGAAGGTGCCTGGGCATTGAGTG
GCCATGGGCCTTCACCAAATGGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:1323038..1325062+

>mRNA_H-akashiwo_Contig12.33.1 ID=mRNA_H-akashiwo_Contig12.33.1|Name=mRNA_H-akashiwo_Contig12.33.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1323038..1325062+ (Heterosigma akashiwo CCMP452)
ATGGATGCTCAACCGCAAGTTGTACAAGCTACCCTTGTAGAATCTCAACA
TCAAAACTTCTCAGACATAGCTCTGTTTGCTCCAGATGTGGGCCGGTGGC
TGGGGGCTAACGGGGCCCCGGAACCGGCCGCGCTCCTGCGGGCCTGCAAC
GTCTTCACGGCGGCCTTCCTCCGCCAGGCGGCGGCGGCGATGGCGGAAGG
AGAGAAGGGGAAGAGCGGCGGCGGCAGGCGAGCCGCGGCGGGGGCGGCGC
TGCTGCCGGGAGGGCGGCACTTTGAGTACATGTGA
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