mRNA_H-akashiwo_Contig12.28.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S3Y9Y2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Y2_HETAK) HSP 1 Score: 107 bits (268), Expect = 2.980e-23 Identity = 65/131 (49.62%), Postives = 80/131 (61.07%), Query Frame = 3
Query: 159 SLAAERERMFC--PDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKVRGM--KGPTKYACTELQGEADTAAILTLKRRKKSAMPQFAKPDYYPGEEASGAAA 539
S+ AE+ C PDFLKKLVEIL E++ I WD G+I I DKLC+ IL K+F+H+KYTSFQRQLNYFGFKK +G G Y C EL G + ++IL +RR P P ASG+AA
Sbjct: 34 SIVAEKPAADCLPPDFLKKLVEILSHENSSIIQWDKGQILIFSPDKLCEQILGKHFRHSKYTSFQRQLNYFGFKKRKGKGKDGCCVYECRELIGCSSPSSILGRRRRT---------PKPSPAPSASGSAA 155
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A6U1QEX2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEX2_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.990e-21 Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 3
Query: 189 CPDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKV--RGMKGPTKYACTELQGEADTAAILTLKRRKK 473
C +FL KLVE+ TE I WD G I + LC +L+KYF+H++YTSF+RQLNYFGFKKV +G P YA TELQG AD +L +KR+ K
Sbjct: 18 CAEFLSKLVEMCRTESPDVIRWDYGRIVVDNPPFLCSHVLKKYFRHSRYTSFKRQLNYFGFKKVQGKGKMNPCVYANTELQG-ADVEELLRMKRKTK 113
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S2V2P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P2_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.910e-18 Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 3
Query: 180 RMFCPDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKVRGMKG---PTKYACTELQGEADTAAILTLKRRKKS 476
R CP+FL KLV +L E ISW +G+I++ ++L ++L++YF+H Y SF+RQLNYFGF+K+ G KG P YA +L+G AD AIL +KR+ S
Sbjct: 15 RRSCPEFLSKLVLMLQVEHPDIISWRSGQISLQDPNRLVTEVLKRYFRHANYNSFKRQLNYFGFRKIEG-KGKMEPCIYANEDLEG-ADLEAILDIKRKTNS 114
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A6V1MA78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MA78_HETAK) HSP 1 Score: 91.7 bits (226), Expect = 1.130e-17 Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query: 180 RMFCPDFLKKLVEIL-DTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKVRGMKG---PTKYACTELQGEADTAAILTLKRR 467
R CP+FL+KLV++L DT ++ I W +I ++ +C+++L KYF+H+KY+SFQRQLNYFGFKK G KG P Y+ ELQG +IL +KR+
Sbjct: 44 RQVCPEFLRKLVDMLKDTSNSSIIEWKNNKIHVYNPHAVCEEVLPKYFRHSKYSSFQRQLNYFGFKKTEG-KGKMTPCVYSSLELQGRP-LESILEMKRK 141
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S2XX45_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX45_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.390e-17 Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query: 180 RMFCPDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKV--RGMKGPTKYACTELQGEADTAAILTLKRRKK 473
R CP+FL KLV IL E I W +G+I + +L ++L+KYF+H Y SF+RQLNYFGF+K+ +G P YA +L+G +D AIL +KR+ K
Sbjct: 38 RKSCPEFLSKLVLILQAEHPDIIHWKSGQIILQDPVRLVSEVLKKYFRHANYNSFKRQLNYFGFRKIDGKGKMEPCVYANEDLEG-SDLEAILDIKRKTK 136
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S0C1L6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1L6_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.570e-16 Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 3
Query: 192 PDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKVRGMKGPTKYACTELQGEADTAAILTLKRR 467
P+FL +L ++L +A+ I W G+I +H ++L D+LQKYF+H+KY SFQRQLNYFGF+K+ G + T D ++LT+KR+
Sbjct: 151 PEFLYQLTKMLTDNNAEVIEWSNGKIEVHNPERLANDVLQKYFRHSKYASFQRQLNYFGFRKLAGKGKMAPCSYTNDATSRDIRSLLTIKRK 242
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S3UUW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUW1_HETAK) HSP 1 Score: 82.8 bits (203), Expect = 1.940e-15 Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 3
Query: 189 CPDFLKKLVEIL-DTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKV--RGMKG---PTKYACTELQGEADTAAILTLKRR 467
CP+FL+KLV+IL D + + W +I IH +C+ +L +F+H+ Y SFQRQLNYFGF+K RG KG P Y EL G+ AAI LKRR
Sbjct: 63 CPEFLRKLVDILRDPSYVRLMEWKNSKIYIHDPPGVCRQVLPSFFRHSNYASFQRQLNYFGFRKTDGRGRKGKMAPCVYGSPELDGKP-LAAIKDLKRR 160
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A4D9D078_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D078_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 5.260e-15 Identity = 67/179 (37.43%), Postives = 88/179 (49.16%), Query Frame = 3
Query: 192 PDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKVRGMKGPTKYACTELQ---GEADTAAILTLKRRKKSAMPQFAK--PDYYPGEE--ASGAAAAGGPAPSLFQREG-PEDHRQAGQFGAFSIPNVHYSVQPA----------PHHGAGA 674
P+FL KL ++L ED I WD+G I +H L ++L KYF+H+KY+SFQRQLNYFGF+K +G KG ACT + +L +KR+ ++ DY GEE G GG +R G P AG G + P+ H SV P P GAGA
Sbjct: 236 PEFLVKLFKMLQCEDPTVICWDSGRIHVHDPKTLGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQG-KGKMS-ACTYTNFDLANSSLKGLLKIKRKTNTSSRNGGGGIEDYLDGEEDEEDGMEDGGGENGERVRRCGSPHLFGGAGAAGTSASPS-HVSVHPGSVPAELLRAQPMPGAGA 411
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S4K355_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K355_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.300e-14 Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 3
Query: 192 PDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKV--RGMKGPTKYACTELQGEADTAAILTLKRR 467
P+FL +L ++L ++ + I W+ G+I +H +L + +L KYF+H+KY SFQRQLNYFGF+K+ +G P Y E E D ++LT+KR+
Sbjct: 42 PEFLYQLTKMLTDDNRECIEWNRGKIEVHNPPRLAETVLHKYFRHSKYASFQRQLNYFGFRKLAGKGKMAPCSYI-NEAVSE-DIRSLLTIKRK 133
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Match: A0A7S2EE87_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE87_TRICV) HSP 1 Score: 82.0 bits (201), Expect = 5.220e-14 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 3
Query: 192 PDFLKKLVEILDTEDAQTISWDAGEITIHQQDKLCKDILQKYFKHTKYTSFQRQLNYFGFKKV--RGMKGPTKYACTELQGEADTAAILTLKRR 467
P+FL +L ++L + + I W G+I +H KL DIL KYF+H+KY SFQRQLNYFGF+K+ +G P Y + D ++LT+KR+
Sbjct: 127 PEFLYQLTKMLTDNNRECIEWSNGKIEVHNPPKLASDILHKYFRHSKYASFQRQLNYFGFRKLAGKGKMAPCSYINEAVSH--DLRSLLTIKRK 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig12.28.1 >prot_H-akashiwo_Contig12.28.1 ID=prot_H-akashiwo_Contig12.28.1|Name=mRNA_H-akashiwo_Contig12.28.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=228bp MEDPRMSLAAERERMFCPDFLKKLVEILDTEDAQTISWDAGEITIHQQDKback to top mRNA from alignment at H-akashiwo_Contig12:1248790..1251264+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig12.28.1 ID=mRNA_H-akashiwo_Contig12.28.1|Name=mRNA_H-akashiwo_Contig12.28.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2475bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1248790..1251264+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig12:1248790..1251264+ >mRNA_H-akashiwo_Contig12.28.1 ID=mRNA_H-akashiwo_Contig12.28.1|Name=mRNA_H-akashiwo_Contig12.28.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=684bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1248790..1251264+ (Heterosigma akashiwo CCMP452)back to top |