mRNA_H-akashiwo_Contig12.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.19.1
Unique NamemRNA_H-akashiwo_Contig12.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S3XRJ5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRJ5_HETAK)

HSP 1 Score: 326 bits (836), Expect = 7.750e-108
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVAAKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEALPCQDM 487
            ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVAAKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEALPCQDM
Sbjct:  215 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVAAKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEALPCQDM 376          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S2BDX6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BDX6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.880e-35
Identity = 67/157 (42.68%), Postives = 104/157 (66.24%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVAAKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEAL 472
            A LY+SI TITS+GYGDITP  A E   C   + +GS +WAY+IGNA GI +++D D I H+QTMD LN F+ ++ VP+E  V+LR++FN SR+LAR ++ + LID MSP L+  V+ +   W+ +V + ++ +S   ++++   +  S +   E +
Sbjct:  450 ACLYWSITTITSVGYGDITPQNADEMMFCTFFLLVGSVLWAYIIGNACGIASSLDVDNIRHHQTMDALNYFMHDQLVPKEERVELRSFFNHSRELARNESYKGLIDRMSPQLKALVSKRRAAWLYKVSYFKN-VSTKFIVNVTHELNASVFVPGEEI 605          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S1K5Z5_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K5Z5_9ALVE)

HSP 1 Score: 132 bits (331), Expect = 1.220e-34
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 2
Query:    5 SLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVA-AKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEAL 472
            SLY+S MT+TSIGYGDI P T  E+ VCV+ M +G  +WAY+IGNA  I+  +D     + +TMD LN  +R+RR+   L V+LR YF  +  L R  ++R LID+MSP L+  VA A N+ W+++V W R   +   V+++ + +Q  AY   E L
Sbjct:   75 SLYWSFMTLTSIGYGDIVPFTYIEYGVCVVCMLIGGMIWAYIIGNAVNIITNIDIHTHEYQRTMDDLNDMMRDRRLEPNLQVRLRTYFQNAHHLQRLISHRTLIDKMSPQLQGEVALAANKPWLQKVSWLRDCTNNQFVVEIAKSLQPLAYGPEEVL 231          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A0G4EBQ7_VITBC (Ion_trans domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EBQ7_VITBC)

HSP 1 Score: 132 bits (331), Expect = 1.340e-32
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 2
Query:    5 SLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVA-AKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEAL 472
            SLY+S MT+TSIGYGDI P T  E+ VCV+ M +G  +WAY+IGNA  I+  +D     + +TMD LN  +R+RR+   L V+LR YF  +  L R  ++R LID+MSP L+  VA A N+ W+++V W R   +   V+++ + +Q  AY   E L
Sbjct:  398 SLYWSFMTLTSIGYGDIVPFTYIEYGVCVVCMLIGGMIWAYIIGNAVNIITNIDIHTHEYQRTMDDLNDMMRDRRLEPNLQVRLRTYFQNAHHLQRLISHRTLIDKMSPQLQGEVALAANKPWLQKVSWLRDCTNNQFVVEIAKSLQPLAYGPEEVL 554          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S2BX63_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BX63_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.140e-31
Identity = 65/157 (41.40%), Postives = 99/157 (63.06%), Query Frame = 2
Query:    5 SLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVAAKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSAYTENEALP 475
            SLY++I TITS+GYGD++P   AE  VC + + LGS +WAY+IGNA GI A++D + I H+QTMD LN F+ ++ +      +LR++FN S+++AR +N ++LI  MSP LR  V+ +   W+ RV +     S   +I LV  +    +   E +P
Sbjct:  393 SLYWAITTITSVGYGDVSPQNPAELQVCTVFILLGSILWAYIIGNACGIAASLDVENIRHHQTMDDLNYFMMDQHLEPSQRYQLRSFFNQSKEMAREENYKSLIGRMSPTLRAVVSRRRAEWLYRVSYFSTA-SEKFLIALVMELNSDIFIPGEVIP 548          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S2JFC4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JFC4_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 1.930e-29
Identity = 65/163 (39.88%), Postives = 97/163 (59.51%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVA-AKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSA----YTENEALP 475
            ASLY+SIMT+T IGYGDITP    E  +C L M +   VW + IGN + I  T++ D+IL   TMD LN F+RER +PR + + +R +F+ +R + R  ++  L+D+MSP L+  VA A N++W++ V + R     D   D +  +  S     +  +E LP
Sbjct:   49 ASLYWSIMTLTGIGYGDITPQNTTERALCSLCMMISGVVWTWSIGNVAAIATTLNPDSILFENTMDSLNYFMRERELPRAMRMTIRDFFSSARRVHRLNDDHDLLDKMSPLLQGTVALAANRKWLEAVWFFRRIDEVDGGTDFIAALAKSLVIRPFVSDERLP 211          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S2NKK3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NKK3_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 9.420e-28
Identity = 65/163 (39.88%), Postives = 97/163 (59.51%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVA-AKNQRWVKRVPWCRHGLSYDLVIDLVQRMQGSA----YTENEALP 475
            ASLY+SIMT+T IGYGDITP    E  +C L M +   VW + IGN + I  T++ D+IL   TMD LN F+RER +PR + + +R +F+ +R + R  ++  L+D+MSP L+  VA A N++W++ V + R     D   D +  +  S     +  +E LP
Sbjct:   49 ASLYWSIMTLTGIGYGDITPQNTTERALCSLCMMISGVVWTWSIGNVAAIATTLNPDSILFENTMDSLNYFMRERELPRAMRMTIRDFFSSARRVHRLNDDHDLLDKMSPLLQGTVALAANRKWLEAVWFFRRIDEVDGGTDFIAALAKSLVIRPFVSDERLP 211          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A7S2D3X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3X8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.120e-27
Identity = 58/159 (36.48%), Postives = 97/159 (61.01%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVAAKNQRWVKRVPWCR-HGLSYDLVIDLVQRMQGSAYTENEALP 475
            A+LY+S +TITS+GYGDITPT   E   C   + + S +WAY+I NA+ IV+T D     ++ TMD LN+F+  +  P  L  +LR+YF   + +A++ + ++LI+++SPAL+  V   N  W+ R+ +      +Y+L++D+ Q +    +   E +P
Sbjct:  121 AALYWSFVTITSVGYGDITPTNHWEMLACTFFLLVSSLLWAYIISNATAIVSTGDPSTHQYHSTMDSLNEFMSAKTFPYPLRRRLRSYFQNRQFIAKSDSFQSLINKLSPALKVDVTELNTTWINRLAFFNGREPNYNLIVDIQQELCAFVFEATEPIP 279          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A0M0J4T5_9EUKA (Cyclic nucleotide-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J4T5_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.300e-26
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVA-AKNQRWVKRVPWCRHGLSY-----DLVIDLVQRMQGSAYTENEALP 475
            A+LY++ MT+T IGYGDI+P    E  V V++M + ++ WA VIG  +G+ +T++   + H  TMD LN F+RER +P+++ + LR YF  +R++    N+  L+  MSP L+  VA A N  W+ ++ W  +GL       D V  L  ++Q +A+  NE +P
Sbjct:  224 AALYWATMTLTGIGYGDISPQNTPEQAVAVVLMLVTASAWASVIGTIAGVYSTLNPTLVQHRNTMDTLNYFMRERHLPKDMRLMLREYFQNARNVLEGNNDEDLLAMMSPLLKGTVAIAANSIWLTQI-WFLNGLGLTRLERDFVAALAMQLQLAAFIVNERMP 386          
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Match: A0A0M0JA66_9EUKA (Voltage-gated ion channel superfamily n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JA66_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.620e-26
Identity = 60/164 (36.59%), Postives = 102/164 (62.20%), Query Frame = 2
Query:    2 ASLYFSIMTITSIGYGDITPTTAAEHWVCVLIMFLGSAVWAYVIGNASGIVATMDQDAILHNQTMDHLNQFVRERRVPRELGVKLRAYFNFSRDLARTQNNRALIDEMSPALRKAVA-AKNQRWVKRVPWCRHGLSY-----DLVIDLVQRMQGSAYTENEALP 475
            A+LY++ MT+T IGYGDI+     E  V V++M + ++ WAYVIG  +G+ +T++ + + +  TMD LN F+RER++P+++ + LR YF+ +R +    ++  L+ +MSP L+  VA A N  W++++ W  +GL       D V  L   +Q SA+  +E +P
Sbjct:  254 AALYWATMTLTGIGYGDISAQNTPEQAVAVVLMLVTASAWAYVIGTIAGVYSTLNPNLVQYRNTMDTLNYFMRERQLPKDMRIMLREYFHNARHMLEANDDEDLLAKMSPLLKGTVAVAANSIWLRQI-WFLNGLGSTRLERDFVAALAMELQLSAFIVHERMP 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XRJ5_HETAK7.750e-108100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2BDX6_9STRA6.880e-3542.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1K5Z5_9ALVE1.220e-3443.95Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4EBQ7_VITBC1.340e-3243.95Ion_trans domain-containing protein n=2 Tax=Vitrel... [more]
A0A7S2BX63_9STRA2.140e-3141.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2JFC4_9EUKA1.930e-2939.88Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2NKK3_9EUKA9.420e-2839.88Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2D3X8_9STRA1.120e-2736.48Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A0M0J4T5_9EUKA1.300e-2637.80Cyclic nucleotide-binding protein n=1 Tax=Chrysoch... [more]
A0A0M0JA66_9EUKA1.620e-2636.59Voltage-gated ion channel superfamily n=1 Tax=Chry... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:875315..875805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.434119-CDS-H-akashiwo_Contig12:875314..8758031681387115.434119-CDS-H-akashiwo_Contig12:875314..875803Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 875315..875803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.19.1prot_H-akashiwo_Contig12.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 875315..875803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.19.1

>prot_H-akashiwo_Contig12.19.1 ID=prot_H-akashiwo_Contig12.19.1|Name=mRNA_H-akashiwo_Contig12.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=163bp
REPVLQHHDHHLDRLRGHHAHDRGRALGVRADHVPGQRGVGVRDRQRLGH
RGHHGPGRHPAQPDHGPPQPVRARAARAARAGREAAGLLQLLARPGAHAE
QPRAHRRDEPRAQEGGGGQEPAVGQARALVPARAQLRPGDRPGAAHAGLG
LHGERGAALPGHA
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mRNA from alignment at H-akashiwo_Contig12:875315..875805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.19.1 ID=mRNA_H-akashiwo_Contig12.19.1|Name=mRNA_H-akashiwo_Contig12.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=491bp|location=Sequence derived from alignment at H-akashiwo_Contig12:875315..875805+ (Heterosigma akashiwo CCMP452)
CGCGAGCCTGTACTTCAGCATCATGACCATCACCTCGATCGGCTACGGGG ACATCACGCCCACGACCGCGGCCGAGCACTGGGTGTGCGTGCTGATCATG TTCCTGGGCAGCGCGGTGTGGGCGTACGTGATCGGCAACGCCTCGGGCAT CGTGGCCACCATGGACCAGGACGCCATCCTGCACAACCAGACCATGGACC ACCTCAACCAGTTCGTGCGCGAGCGGCGCGTGCCGCGCGAGCTGGGCGTG AAGCTGCGGGCCTACTTCAACTTCTCGCGCGACCTGGCGCGCACGCAGAA CAACCGCGCGCTCATCGACGAGATGAGCCCCGCGCTCAGGAAGGCGGTGG CGGCCAAGAACCAGCGGTGGGTCAAGCGCGTGCCCTGGTGCCGGCACGGG CTCAGCTACGACCTGGTGATCGACCTGGTGCAGCGCATGCAGGGCTCGGC CTACACGGAGAACGAGGCGCTGCCCTGCCAGGACATGCTCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:875315..875805+

>mRNA_H-akashiwo_Contig12.19.1 ID=mRNA_H-akashiwo_Contig12.19.1|Name=mRNA_H-akashiwo_Contig12.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig12:875315..875805+ (Heterosigma akashiwo CCMP452)
CGCGAGCCTGTACTTCAGCATCATGACCATCACCTCGATCGGCTACGGGG
ACATCACGCCCACGACCGCGGCCGAGCACTGGGTGTGCGTGCTGATCATG
TTCCTGGGCAGCGCGGTGTGGGCGTACGTGATCGGCAACGCCTCGGGCAT
CGTGGCCACCATGGACCAGGACGCCATCCTGCACAACCAGACCATGGACC
ACCTCAACCAGTTCGTGCGCGAGCGGCGCGTGCCGCGCGAGCTGGGCGTG
AAGCTGCGGGCCTACTTCAACTTCTCGCGCGACCTGGCGCGCACGCAGAA
CAACCGCGCGCTCATCGACGAGATGAGCCCCGCGCTCAGGAAGGCGGTGG
CGGCCAAGAACCAGCGGTGGGTCAAGCGCGTGCCCTGGTGCCGGCACGGG
CTCAGCTACGACCTGGTGATCGACCTGGTGCAGCGCATGCAGGGCTCGGC
CTACACGGAGAACGAGGCGCTGCCCTGCCAGGACATGCT
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