mRNA_H-akashiwo_Contig12.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.18.1
Unique NamemRNA_H-akashiwo_Contig12.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S3XRJ5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRJ5_HETAK)

HSP 1 Score: 268 bits (686), Expect = 1.470e-85
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 2
Query:    2 AQVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 439
            AQVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW
Sbjct:   29 AQVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 174          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S1C4L1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4L1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.940e-27
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 2
Query:   35 ALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 439
            AL+W+NRLVD +FL DMG+NF + ++++ E  G+WV +  +I  RYLKGWF +DL SILP+D +A L G D ++   +V R XXXXXXXXXXXXXX     +RWE S+ +SYS LSL KF +L++   HW+A AW
Sbjct:  174 ALWWLNRLVDFSFLIDMGVNFFLGFFDDEE--GQWVFENKRIAKRYLKGWFIIDLISILPYDDMAGLFGND-ALSNLRVLRTXXXXXXXXXXXXXXXXXXXKRWELSMDMSYSTLSLIKFVVLVMVSVHWMASAW 305          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S0T1S8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T1S8_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 2.110e-26
Identity = 72/136 (52.94%), Postives = 101/136 (74.26%), Query Frame = 2
Query:   32 NALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 439
            +ALFWVNRLVD+ F+ D+ MNF + Y +E+  S  ++ +  KI  RY++G+F +DL S++PFD + +LLGG +  ++ K+ R XXXXXXXXXXXXXX+ +IFRR EN++SI+YSVL L KF L  I + HWLAC +
Sbjct:  251 SALFWVNRLVDILFIIDLVMNFNLIYLDEA--SNTFITNRWKISGRYVRGFFLIDLLSVMPFDSIGMLLGGGDE-KQIKILRXXXXXXXXXXXXXXXSGRIFRRLENALSINYSVLQLSKFVLSTILVSHWLACGY 383          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S0X2L0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X2L0_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 1.810e-25
Identity = 69/143 (48.25%), Postives = 103/143 (72.03%), Query Frame = 2
Query:    5 QVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLAC 433
            +V+ L+ S+NALF++NR VD++FL DM +NF + Y+++    G+WV D  KIR +Y + WFF+D+ SILPFD + +L    NSI++ KV   XXXXXXXXXXXXXX   IFRR+E++++I Y+ L + K+  +++   HW+AC
Sbjct:  271 EVSFLEPSLNALFFINRFVDVSFLFDMLLNFYLGYFDDD--MGKWVFDLVKIRKKYFESWFFIDIVSILPFDAIGILTDS-NSIKRLKVXXXXXXXXXXXXXXXXXXXXIFRRFESAMAIDYTSLDMAKYLTIVLLTSHWMAC 410          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S2BDX6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BDX6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.880e-25
Identity = 69/152 (45.39%), Postives = 101/152 (66.45%), Query Frame = 2
Query:    5 QVALLQTSVNA-LFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGG--DNSIEKF----KVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 439
            +V+ L+T   + LFW+N++V+L F+ DM M F + Y +     G WVK    I   YL+ WF +D+ SILPFD LA++  G  D +   F    K+ R+XXXXXXXXXXXXX AS++++RWE  ++I Y+ ++L KF +L++ MGHW+AC W
Sbjct:  257 EVSFLETEAGSFLFWINQVVNLVFVADMVMQFFIPYKQSKAAGGHWVKGKRDITLHYLRTWFTIDIISILPFDELAMMGQGKEDAADSPFASLLKMVRIXXXXXXXXXXXXXKASRVYKRWEARVAIPYAYVALMKFSILLMMMGHWMACGW 408          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A0G4H5T8_VITBC (Ion_trans domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H5T8_VITBC)

HSP 1 Score: 110 bits (274), Expect = 3.400e-25
Identity = 74/147 (50.34%), Postives = 97/147 (65.99%), Query Frame = 2
Query:    5 QVALLQTSVNALFWVNRLVDLTFLKDMGMN--FCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 439
            +VA L+T  + LF VNRL+DL FL DM  N  F M   ++S+   RWVKD   I   YLKGWF +DL SILPFD+L LL     +I++ K+   XXXXXXXXXXXXXX   +F++ E S+S  Y  ++L KF +L++  GHW+AC W
Sbjct:  168 EVAFLETKWDWLFVVNRLIDLLFLVDMIFNMFFVMYLKQDSKTGARWVKDRRMIMRHYLKGWFAIDLLSILPFDVLGLLYES-KTIQRLKIXXXXXXXXXXXXXXXXXXXXVFKQMETSVSWPYGKIALVKFAVLIVVAGHWMACCW 313          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S2IUQ3_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IUQ3_9DINO)

HSP 1 Score: 107 bits (267), Expect = 2.800e-24
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 2
Query:    2 AQVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSL-YKFGLLMICMGHWLACAW 439
            A+VALL T  + LF +NR++D+ F+ DM + FC+ Y  ++ +  R       I   YL+ WFF+DL SI+PFD ++L+LG    +E+ KV + XXXXXXXXXXXXXXAS++F RWE S++I+Y+ L L + F + ++   HWLAC W
Sbjct:  111 AEVALLDTHFDTLFVINRIIDMVFIVDMALQFCVAYRVKTPYGSRLETRRNIIIRHYLRTWFFLDLLSIMPFDSMSLILGS-TVLERAKVMKXXXXXXXXXXXXXXXASRVFHRWETSMAINYNTLKLVFAFSVFLLA-SHWLACFW 255          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A7S0S958_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S958_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 3.910e-24
Identity = 68/143 (47.55%), Postives = 97/143 (67.83%), Query Frame = 2
Query:    5 QVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLAC 433
            +VA LQ  ++ LF +NR+VDL FL D+ +NF + Y E    +G+WV     IR++Y++G F VD+ SILPFD++ +++    ++   KV R XXXXXXXXXXXXX A ++ RR E S SI+YS + LY FG  ++ + HWLAC
Sbjct:    7 EVAFLQPKIDVLFAINRMVDLVFLGDIVINFFLMYIERE--TGKWVSQLRIIRYKYIRGTFVVDVVSILPFDVIGIVVNSP-AVSNLKVLRXXXXXXXXXXXXXXKAGRLVRRIETSFSINYSAMQLYGFGATVLVVAHWLAC 146          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: C1E5D3_MICCC (Voltage-gated ion channel superfamily n=3 Tax=Micromonas TaxID=38832 RepID=C1E5D3_MICCC)

HSP 1 Score: 107 bits (266), Expect = 4.150e-24
Identity = 68/145 (46.90%), Postives = 98/145 (67.59%), Query Frame = 2
Query:    5 QVALLQTSVNALFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLACAW 439
            +V+ + T ++ LFW+NR VD  F+KD+ +NF +  Y+  +  G+ V     +   YLKGWF +D+ S+ PFDL+ALL+   +S+ + KV R XXXXXXXXXXXXXXA++IF R E   +I YS+L L +F +L +   HW+ACAW
Sbjct:  133 EVSFMDTKIDTLFWINRAVDGLFVKDIVLNFFVAIYDPED--GQLVFHHPTVVRSYLKGWFPIDVVSVFPFDLIALLMN-TSSVGRMKVLRXXXXXXXXXXXXXXXAARIFARLETQYNIDYSMLELVRFAVLALVTSHWMACAW 274          
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Match: A0A024TAN5_9STRA (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAN5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.400e-24
Identity = 62/132 (46.97%), Postives = 92/132 (69.70%), Query Frame = 2
Query:   38 LFWVNRLVDLTFLKDMGMNFCMTYYEESEFSGRWVKDGAKIRWRYLKGWFFVDLFSILPFDLLALLLGGDNSIEKFKVFRVXXXXXXXXXXXXXXASKIFRRWENSISISYSVLSLYKFGLLMICMGHWLAC 433
            LF +NR VD  F+ D  ++F + YY+E+  S  WV D  KI W+YL GWFF+D+ S+LPFDL+ + +  +N++++ +  RV XXXXXXXXXXXX  +  FR WE+ +SI+Y+ ++L KF +L+    HW+AC
Sbjct:  116 LFVLNRFVDACFVADAALHFFLMYYDEA--SSVWVSDRRKIAWKYLSGWFFLDVISMLPFDLVGIAID-NNTVKQLRFTRVLXXXXXXXXXXXXRGASNFRVWESKMSINYATIALAKFCVLVFMTSHWMAC 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XRJ5_HETAK1.470e-85100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1C4L1_9STRA4.940e-2753.33Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0T1S8_9CHLO2.110e-2652.94Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S0X2L0_9CHLO1.810e-2548.25Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2BDX6_9STRA1.880e-2545.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0G4H5T8_VITBC3.400e-2550.34Ion_trans domain-containing protein n=2 Tax=Vitrel... [more]
A0A7S2IUQ3_9DINO2.800e-2446.94Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S0S958_9CHLO3.910e-2447.55Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C1E5D3_MICCC4.150e-2446.90Voltage-gated ion channel superfamily n=3 Tax=Micr... [more]
A0A024TAN5_9STRA7.400e-2446.97Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:874139..875198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size442
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.8351462-CDS-H-akashiwo_Contig12:874138..8745531681387114.8351462-CDS-H-akashiwo_Contig12:874138..874553Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 874139..874553 +
1681387114.8491127-CDS-H-akashiwo_Contig12:875171..8751971681387114.8491127-CDS-H-akashiwo_Contig12:875171..875197Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 875172..875197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.18.1prot_H-akashiwo_Contig12.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 874139..875197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.18.1

>prot_H-akashiwo_Contig12.18.1 ID=prot_H-akashiwo_Contig12.18.1|Name=mRNA_H-akashiwo_Contig12.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=147bp
RPGRPATDLRECALLGQPPGGPDFPEGHGHELLHDLLRGVRVFRAVGEGR
GQDPVAVPEGLVLRGPVLDPALRPAGAAAGRGQLHREVQGLPGGEAAAAA
EDGAHRQGLQDLPAVGEQHLHLVLGPVAVQVRPAHDLHGALAGMRVG
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mRNA from alignment at H-akashiwo_Contig12:874139..875198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.18.1 ID=mRNA_H-akashiwo_Contig12.18.1|Name=mRNA_H-akashiwo_Contig12.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-akashiwo_Contig12:874139..875198+ (Heterosigma akashiwo CCMP452)
CGCCCAGGTCGCCCTGCTACAGACCTCCGTGAATGCGCTCTTCTGGGTCA ACCGCCTGGTGGACCTGACTTTCCTGAAGGACATGGGCATGAACTTCTGC ATGACCTACTACGAGGAGTCAGAGTTTTCCGGGCGGTGGGTGAAGGACGG GGCCAAGATCCGGTGGCGGTACCTGAAGGGCTGGTTCTTCGTGGACCTGT TCTCGATCCTGCCCTTCGACCTGCTGGCGCTGCTGCTGGGCGGGGACAAC TCCATCGAGAAGTTCAAGGTCTTCCGGGTGGTGAAGCTGCTGCGGCTGCT GAAGATGGTGCGCATCGTCAAGGCCTCCAAGATCTTCCGGCGGTGGGAGA ACAGCATCTCCATCTCGTACTCGGTCCTGTCGCTGTACAAGTTCGGCCTG CTCATGATCTGCATGGTGAGCCGCGAAGGCGACTCTGCCTTCCCCCCGCC CCCCTTCCAATGAAAAAAGTGTTAAAAAAAAAGTGTTGTCCATGCCACCA CCGCCCCTTGTGTACCTCTAAACTAGCCTGCCTGTTTTTTTGTTTTGTCC TTGCCTTGTGTATATAGAAGACACATCAGTGTGTGGCAGAAGTTTGGCGG GTGCTTGCCTCCCTGCCAGAGGAATGTTTCACTGCCCTCTTTCGAACTTG TATGCTTCTCATAACCCCCACCCTTGTGGGTAAGCCCGTACGCCCCTGCT GCCCTGCAACCACTTAAAATTACATGGCAGCCCCCCAGGCCCGGGGTTCT GTCGTCCTTGACTTTCATCCGATCGATGGATGTGGGTTGTCGGAAGAAGC GTCTATATAGCAGAGACAACTGAAAGACGGCGATAAGGCCACAGGGCAAT ATAACATGTAGGGCTTCACGCGGCTGGGACTCCTGGGTGGTTGGGCAGTC GCGATACGAATTCCGAAGAAGTGTTCAGATGCCAAGGCGGCCTGCAAGCA GACAGTGGTTGTGGCCCAGGATGTGGGAGGGCACATTGCAAGTTAGGAAC GTAGAAAACCTCCCTCCCACTTTTCCCACACAGGGGCACTGGCTGGCATG CGCGTGGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:874139..875198+

>mRNA_H-akashiwo_Contig12.18.1 ID=mRNA_H-akashiwo_Contig12.18.1|Name=mRNA_H-akashiwo_Contig12.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=441bp|location=Sequence derived from alignment at H-akashiwo_Contig12:874139..875198+ (Heterosigma akashiwo CCMP452)
CGCCCAGGTCGCCCTGCTACAGACCTCCGTGAATGCGCTCTTCTGGGTCA
ACCGCCTGGTGGACCTGACTTTCCTGAAGGACATGGGCATGAACTTCTGC
ATGACCTACTACGAGGAGTCAGAGTTTTCCGGGCGGTGGGTGAAGGACGG
GGCCAAGATCCGGTGGCGGTACCTGAAGGGCTGGTTCTTCGTGGACCTGT
TCTCGATCCTGCCCTTCGACCTGCTGGCGCTGCTGCTGGGCGGGGACAAC
TCCATCGAGAAGTTCAAGGTCTTCCGGGTGGTGAAGCTGCTGCGGCTGCT
GAAGATGGTGCGCATCGTCAAGGCCTCCAAGATCTTCCGGCGGTGGGAGA
ACAGCATCTCCATCTCGTACTCGGTCCTGTCGCTGTACAAGTTCGGCCTG
CTCATGATCTGCATGGGGCACTGGCTGGCATGCGCGTGGGC
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