mRNA_H-akashiwo_Contig12.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.15.1
Unique NamemRNA_H-akashiwo_Contig12.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.15.1 vs. uniprot
Match: A0A6V1PD48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PD48_HETAK)

HSP 1 Score: 110 bits (276), Expect = 1.910e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 TDNFTTPDYGDLGSMYYIYVCIKEERKVSLKLQREAKRKKQASKAGRLKKGALLKKN 173
            TDNFTTPDYGDLGSMYYIYVCIKEERKVSLKLQREAKRKKQASKAGRLKKGALLKKN
Sbjct:  206 TDNFTTPDYGDLGSMYYIYVCIKEERKVSLKLQREAKRKKQASKAGRLKKGALLKKN 262
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BLAST of mRNA_H-akashiwo_Contig12.15.1 vs. uniprot
Match: A0A7S3Y6J5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J5_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.490e-9
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = -3 
Query:  334 SYKRRMKEPILLIQQAARTGDNGDMPGTMNKDYNNNRLDSTWGRAFKFIRKEYGI 498
            +Y+RRM E IL+    ARTG +  MPGTMN D NN RLD+TWGR FKFIRK+Y I
Sbjct:  256 TYRRRMMESILI---QARTGGDDRMPGTMNVD-NNYRLDTTWGRTFKFIRKDYKI 306
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BLAST of mRNA_H-akashiwo_Contig12.15.1 vs. uniprot
Match: A0A7S4DDA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA1_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 2.470e-9
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = -3 
Query:  334 SYKRRMKEPILLIQQAARTGDNGDMPGTMNKDYNNNRLDSTWGRAFKFIRKEYGI 498
            +Y+RRM E IL+    ARTG +  MPGTMN D NN RLD+TWGR FKFIRK+Y I
Sbjct:  590 TYRRRMMESILI---QARTGGDDRMPGTMNVD-NNYRLDTTWGRTFKFIRKDYKI 640
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6V1PD48_HETAK1.910e-26100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6J5_HETAK1.490e-963.64Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S4DDA1_HETAK2.470e-963.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:849906..856018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size578
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.2845898-UTR-H-akashiwo_Contig12:849905..8500771681387115.2845898-UTR-H-akashiwo_Contig12:849905..850077Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 849906..850077 +
1681387115.3199737-UTR-H-akashiwo_Contig12:855612..8556321681387115.3199737-UTR-H-akashiwo_Contig12:855612..855632Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 855613..855632 +
1681387115.3495436-UTR-H-akashiwo_Contig12:855938..8560181681387115.3495436-UTR-H-akashiwo_Contig12:855938..856018Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 855939..856018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.3377006-CDS-H-akashiwo_Contig12:855632..8559381681387115.3377006-CDS-H-akashiwo_Contig12:855632..855938Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 855633..855938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.15.1prot_H-akashiwo_Contig12.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 855633..855938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.15.1

>prot_H-akashiwo_Contig12.15.1 ID=prot_H-akashiwo_Contig12.15.1|Name=mRNA_H-akashiwo_Contig12.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
MRHEEVGCWGKVVGHFFAVWHTVHSFISSPLPALSLMTMNILTLHGGDSV
FFTDELEGPPPGGIKAVIIVVFIHSPWHITIVSCSCCLLDQEDRFLHPPF
V*
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mRNA from alignment at H-akashiwo_Contig12:849906..856018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.15.1 ID=mRNA_H-akashiwo_Contig12.15.1|Name=mRNA_H-akashiwo_Contig12.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6113bp|location=Sequence derived from alignment at H-akashiwo_Contig12:849906..856018+ (Heterosigma akashiwo CCMP452)
CCACGGACAACTTCACCACCCCGGACTACGGCGACCTGGGCAGCATGTAC
TACATCTACGTGTGCATCAAGGAGGAGCGCAAGGTCAGCCTCAAGCTCCA
GCGCGAGGCGAAGCGGAAGAAGCAGGCCTCCAAGGCGGGGCGGCTCAAGA
AGGGCGCCCTGCTGAAGAAAAAGTGAGTGGGTGGGTGGGTGGGTGAATGG
GGGAGACAGGGGCCTGTCGAACACTTGGTGCCACCAGTACCTGGTGGTTG
TTTCTCCTCTGTACACCTTGTTGTATTTGCTACTACATATATCAATGTGA
GAGTTTGTTGCAATAAATAATATTAGGCCAGCATCATTTTTTTCTACTTT
GCCATTAATAATGTCTTTGACGTGGAGCAAATCTGGCACTGGTCTATGTT
TGCTCAAATCACAAATTGGATGTTGTAGGATAGCTTTTTTCTAATCATTA
TATTAAAAATGAATACACCTGCCTAAGTGGTTTGTGATTTGAGCAAACCT
AGACCAGTGCCAGATTTGCTCCACATCAAAGACATTAATGTCAAAGTATA
GAAAAAAAATGATTATAACCCCTGTCTTGACAGAGACTGCCACAAAAAAC
TATTAGGCTAGCATATATAATAGTTGCAATACGTATGTACATACATATGC
AGTTTCCCCAGTCTATTTTTGCTGCTGCAAACTATATATATATATATATG
ATGATGATGATGATTTTAATTTGTTTCAAGTCCACCAATTGGATAACTAC
AAGGACCGAAGCCCCGGCCTCCATATGTGGACCCTGCCATTTCTAGTCCC
CACTACTTATTCCTTGGTCCATCACCAAAACTTCAGATAAGAAAAAGAAA
AGAAAGAAAACATACCACTTTGGTCCCCACTGCACAATTCCTATATATAT
ATATATATATATATATATATATATAATAAAGAGTTAAATTTAAACAAAAC
AACCCACGCCTTGCATCTATGCAGATGTCCCTGTGGTAATATACCAAAAC
CTACACATGAAATCCCAAAACCCAAATCAATACAGAACATCAAATACAGC
ACACCCCACTATCTCTGGAAGAGAGTGGCAATCCCCTCGCCATCCTCGAA
CCCCGAGCTCCTCCACCTCTTCCTGGAGCGCCTGATCCGCAGATCCACCG
CTTTGATGAGCGCGAACTGCAAGCGGGCACGCACTCGGTTGGTGACCGTT
GAGAGAGGCTTATGCCACTTTGCCGAGAGCCGAGCAGTAATGCGCCTGAG
GAAGGCTTGCATGGACTGGTGGGCAATACCCTCCACAGTCACTATCAAGG
GGCAGAAAGTAGCACGGCGCTCTTCCGCAGCAGCCTTGTACACCTTCACC
TTTTCCCGGGCAGAGGTATTGAGGGCATTCTGGTAAGAGATGTGCTGGGC
TGCACGTCCAGGGCTGCCAGCATGTATAATAATGCGGGTATCAAAAAGAC
AGTCCCTATCAGGTTCCCACACACCCCTCACCACAAAATCCGCCCTCAAG
CCATCGCTACCTCCATCCCTGGCCCGCTGCGACGCCTCCCTCACCACCGG
CTCCCAGCCACAGTTGTTCCAGGCCTTCCGGCTGAACTCCCCCATGACAT
CCCGTAACTGGTTGTGGCCCCATCCCACAAGACCCCCCTTCAAGCACACG
AGAGCATGATCAGTGGAGAAGCGCTTGCCCCATTCATCGCACTTCTCAGG
CAGCCCCTGAAGGTCCCACCCGTACTGGAGGTGCACCCGGTCGCGCCTCT
GCTGAGCGGACAAGTCAAATGACTCTTTCGCACGGGGCACCACAGACATC
CACAACATGCCCTTGGAGTCCACCTGGCCCTGCACCTTCTGCCTCTGCTC
CGGCCTCAGCTTGCTCAGCACCTCCTCATACCTAGCCTTGAGCTCCGCCT
GCCCCTCCGCCCTGCGCTTCCGCTGCTGGCCAGCATAATAGGCACGGTAT
CCAGGCACGTCCAGATATACAGCCCTGGACGTGCAGCCCAACACAGCTCT
TACCAGAATGCCCTCAAGACCTCTGCTCGGGAAAAGGTGAAGTTGTACAA
GGCTGCTGCGGAAGAGCGCCGTGCTACTTTCTGCCCCTTGATAGTGACTG
TGGAGGGTATTGCCCACCAGTCCATGCAAGCCTTCCTCAGGCGCATTGCT
GCTCGGCTCTCGGCAAAGTGGCATAAGCCTCTCTCAACGGTCACCAACTG
GGTGCGTGTCCGCTTGCAGTTCGCGCTCATCAAAGCGGTGGATCTGCGAA
CCAGGGGCTCCAGGAAGAGGTGGAGGAGCTCGGGGTTCGAGGATGGCGAG
GGGATTGCCACTCTCTTCCAGAGATAGTGGGGTGTGCTTTTTTTGATGTT
CTGTATTGATTTGGGTTTTGGGATTTCATGTGTAGGTTTTAGTATAGTAC
CACAGGGACATCTGCATAGATGCAAGGCGTGGGTTGTTTTGTTTAAATTT
AACTCATATTATATAATGGTGCCTGTCAATGGCCCTCTATACAGCAGGGA
TCTGTTTTGTGAACAACATGAACTCATGAGGTGTGCTCATGGTCAGTTTG
GTTGGGGGGAACTATAGTAGGTTTTTTTTTTTTTTTTTACAAGATATCAA
AAGGCTTTGAGGCAATGGACCTCGTCAAGCCGTCTACGCCTATAAATCAC
AGGGTGGTTTGCTGCACTACTGCCAGCCCATCCAGCACTACTACAGGTTA
CAACAACAACACCAGGATACCGCTACTAATCAATATCAGTTTTTTTTTCC
TTTTGGGGGGGGGTTGTATGGTTCGTGATCAAACAGCATACCAGCATATC
TTGGAACCAACAAAAAGAAATAATAACAAAGCTATACTACTCATGATATA
AATGATGTGATTATTAACAATCATCGTCTTCGCTACATCTCCTCTCAAAA
CGCTTAGTAATAATAATATAATCTAGAAGAATAGTGATGTTTCTTTTGTC
TTCCAACCACCATTGAAAAGTCGAGCCTGGCCACCTCTGAAGTACCTCCC
AATGTTTTCTAATCAGTGCACTTCTATGTACATCATATACTGGGCATACA
TTGAGTATAGTATAAGTAATATGATGATCGGCATGGTGCCTGTCAATGGC
CCTCTATACAGCGGGGATCTGTTTTGTGAACAACATGAACTCATGAGGTG
TGCTCATGGTCAGTTTGGTTCTGGGTGTACAAAGATGCACAGAGTGAGGC
AGTCAGCCAGGGCTAGGTGCTGGGCCGATGCCCAAGGATGGCTGTGTCCT
AGACTGCAGCTCTGCACGCTCAACCATGTCCATGAGGTCAACGTCTCGCG
GCTTCCGTGGGTGTACACCCTTGTTCCCAAGCCAGAAGGCTGGATAGAGG
AAGGAGCGGGAATGGGGAGGGGTTTGGGCTGGGGATTTCAGCACAACTAG
TGCTCGTACTGCATCCTTAGCAGCGGGGATTCAAAGTGGGACGAGTCGGG
GCCTCTCTGGCAGCGGGGCAGTTCAAGGACTTCCAAGCTTCCGGGCAGGC
TTTCTCGTCGTTCGGCGCGCTCTAGAGGTGTCCAGACGACGCCAGGGGTT
TCGAGGGACGGGGATCTCGATGGGCGCAACAGGGGGGGCGGGGGCTCTCG
ATCAGAGCTTCTCAACGTGGGGGCGAGACCATTTTCGCCGATATCGAACT
TGGCTGCTGTCGACCAACAAACCAGCGGTGGATCGCTGACGACGACGAGG
GCTGCTGCTGCTGCTGGTGGTGCTACTACGGCACAACAACAACAACAGCA
ACAACATCATCATCAGCAATCGCCGCAGCAGCAGTCGGGGGCGGGCGAGG
GTGAGCAGCCACATCAAGAGGGGGAACGGGGGGAGGCTCGAGGGGATCAG
GAATTCGAGGAGGCTGTTGCAGTTGTTGACACGTTAGTTGAGCTTGTAAC
CATGATCTCGCAGGGGGGGCGAGCAATTCTCCGCGTTCATGTTGATGCGC
AGGAATCCGGAGGTCTGGAGGGGGAGCCCATTGGTCAGGCAACCAATCCA
GACGTATCCGAAGGGCCCGATACTCAAGGAGCCGGGCAGCAGGGAGGGGG
GGGAACCGGGGATCAGAGCAGTGTGCTCAGAGCAGTGTGCTGCATTCAGC
GCTTGCTGCTGCTGGTGCTGATGATGGCGCAGCTGCTCCTCCTCCTCCTC
GTAGTTCTTGCGGCACGACGGCGCTGTTGGCACAACAAGAATCTCAATCG
CAGTCTAGTCAATTGGAGGAGGGAGGCACTTCCTCGGAGACGGAGTCGTC
AGGCAGTAGTGAGGATGAAATGGCTTCAAGTAGCTCGGAGGAGAGCTTAA
GCGAGGGTAACAGGGTGGAGATTCAGCCGAAGCGGAGTGTATGGGTCGCT
TTTCCAGACCGGGGAGTCGGAGAAGCGCTGGGGAAAGAAGAGGGGTTCAA
GCCAGCACCTTTGGGAAGGAGGTTCAGCCGTCGACTTGCGAAACTGGACA
GGCAGAAAGAAACTGAAAAGGCGAGGCTGGAGAAGCAGGAGCTAGAGGCG
AAGCAGGCCAGGGAAGACCTGTTGCTCCAGCGGGAAGCATTGGCTGCAGC
TGCCGAAGCGCGCCATAAGGAAGTGGAGGCCAAGGGGCCGGAGGCGAAGA
gGGGAGGGCAGCTTGCAGGTCGAGGCAGGGGCAGGGGGGCCAAGGGCAGA
GGCCCACGCGGGCGCCAAGGGGCGGAGGGGCAGGGGCCATGGGCTGGCTA
GGGGACCAGGCAACGGGCTGGTCTCTCGGGTACAGGGGCGACAGGCCAGG
GGGTGAGCCgGGGGTGTGGCTCTTCGTGGCGGATGAGAAGAATCGGGACC
GAGATGTGAGGGCGAGAATCGCCTGCGGGATGTGCGGGATGCTGGCACAC
AAGCCGGAAGACTGTCATCTGGAAAAGAGGTTTTGCCACATCTGCCTCGG
TCATCCTGAAGGGTCAAGTATGTGCAAGCCTAGGATTGCAGTGCAGTTCC
TCGAGAAGGAGCTTCCAAACTGGTATCCAGGGGGGTGAAATCCTCCAGAT
GAGTATAGATGCATGACTATGCCACAAAGCAATGGGAAGCTTTCATGGGG
TTCAGCTGAGGGGGTGGTAGCTGGCCTGCACAGGGGACAGTCCATCCGGG
GCGGGGCAGCTCGGGTGGAAGCAGGGGTAGTCAACAGGAGTATGTTTTAT
CAGACAGCAGTAGGAGTAGTGATGTATCAGAGGTTACCAGACAAGTGGCA
AGATGGAATGGGGTTTGATACTTGTTCTTGTGTTCTTAGGTAGACTTGAG
TAGATGTATAATGAAATGGCAAACAGAAGTGGAAGGGTCTGCTTATAGAA
GCTTGGGGGTACTCCCCGAAAGTGATTTGAAAGGTTAGACTTGAAACTAA
ACATAACATCAATCAATCAATATATATATAATATATTATATATATGTACA
CGCGCGCGCGCACACACACACACACACACAAATGCAATATCATATACTAC
TCACTGTGTAAAAGTCCGTATATATTATGCTGCTGAGGTTTGATTCTTGA
GCAGCATGCGTTGTGATAATATATAATGATATACACGGACTTTTTAACAC
AAAAGTGAACCTTTGCACTTTATGGTTGTGTTTACTATAATACTTTTTTA
TGCGATGACAGCAGTATAATCATTCTTTCTTTATGCTAAAAAAAAAATAC
AAAATAAAGAATAATGAACAACAAAAACAACAACAACACTTTTTTTTACA
ACTACAGTTAAAGACAACTGGAGCTGCATGCGGCATGAGGAGGTTGGTTG
TTGGGGGAAAGTGGTTGGGCATTTCTTTGCTGTGTGGCATACGGTGCATT
CATTTATTTCTTCTCCCCTTCCTGCCCTCTCGCTCATGACGATGAACATA
CTGACTCTACATGGAGGAGATTCCGTATTCTTTACGGATGAACTTGAAGG
CCCTCCCCCAGGTGGAATCAAGGCGGTTATTATTGTAGTCTTTATTCATA
GTCCCTGGCATATCACCATTGTCTCCTGTTCTTGCTGCCTGCTGGATCAG
GAGGATAGGTTCCTTCATCCTCCTTTTGTATGACATTTTCCCTTGCAGTT
ATGAATGGTGATGTACACCGCGTATAGTAGTAGTAGTGGTGGTGTTGTGG
GGGGTGGCAGCAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:849906..856018+

>mRNA_H-akashiwo_Contig12.15.1 ID=mRNA_H-akashiwo_Contig12.15.1|Name=mRNA_H-akashiwo_Contig12.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig12:849906..856018+ (Heterosigma akashiwo CCMP452)
ATGCGGCATGAGGAGGTTGGTTGTTGGGGGAAAGTGGTTGGGCATTTCTT
TGCTGTGTGGCATACGGTGCATTCATTTATTTCTTCTCCCCTTCCTGCCC
TCTCGCTCATGACGATGAACATACTGACTCTACATGGAGGAGATTCCGTA
TTCTTTACGGATGAACTTGAAGGCCCTCCCCCAGGTGGAATCAAGGCGGT
TATTATTGTAGTCTTTATTCATAGTCCCTGGCATATCACCATTGTCTCCT
GTTCTTGCTGCCTGCTGGATCAGGAGGATAGGTTCCTTCATCCTCCTTTT
GTATGA
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