mRNA_H-akashiwo_Contig12.111.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.111.1
Unique NamemRNA_H-akashiwo_Contig12.111.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:5462227..5462619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size395
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.7745063-UTR-H-akashiwo_Contig12:5462226..54622471681387115.7745063-UTR-H-akashiwo_Contig12:5462226..5462247Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 5462227..5462247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.784339-CDS-H-akashiwo_Contig12:5462247..54626191681387115.784339-CDS-H-akashiwo_Contig12:5462247..5462619Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5462248..5462619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.111.1prot_H-akashiwo_Contig12.111.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 5462248..5462619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.111.1

>prot_H-akashiwo_Contig12.111.1 ID=prot_H-akashiwo_Contig12.111.1|Name=mRNA_H-akashiwo_Contig12.111.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=124bp
MSWGQKKLCTTILNPAGPTANQPSPPRPSPVPKPPSRKTTGMMTTGGAFF
RHHRSPSSVNNRDDGDRQCLLPPPSSSLPFISRASPPSWRTTNRADGGSP
FTDEPAPCRLCLPPTAARLSSPGR
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mRNA from alignment at H-akashiwo_Contig12:5462227..5462619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.111.1 ID=mRNA_H-akashiwo_Contig12.111.1|Name=mRNA_H-akashiwo_Contig12.111.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5462227..5462619+ (Heterosigma akashiwo CCMP452)
AGCGTCTTCCAGATAGGTAAAATGAGCTGGGGCCAAAAAAAACTATGTAC
TACAATACTAAACCCAGCAGGGCCCACTGCCAACCAGCCCAGCCCCCCCC
GTCCATCGCCAGTCCCGAAACCCCCATCGAGAAAGACAACGGGCATGATG
ACGACCGGCGGCGCCTTCTTCCGCCATCATCGTTCCCCTTCATCGGTCAA
CAACAGGGATGATGGCGACCGGCAGTGCCTTCTTCCGCCGCCATCATCAT
CGCTCCCCTTCATCAGTCGGGCCTCACCCCCTTCCTGGCGCACCACCAAC
CGGGCGGACGGCGGAAGCCCTTTCACCGACGAGCCCGCGCCCTGCCGCCT
CTGCCTCCCGCCGACTGCTGCACGGCTCAGCAGTCCGGGTCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:5462227..5462619+

>mRNA_H-akashiwo_Contig12.111.1 ID=mRNA_H-akashiwo_Contig12.111.1|Name=mRNA_H-akashiwo_Contig12.111.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=372bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5462227..5462619+ (Heterosigma akashiwo CCMP452)
ATGAGCTGGGGCCAAAAAAAACTATGTACTACAATACTAAACCCAGCAGG
GCCCACTGCCAACCAGCCCAGCCCCCCCCGTCCATCGCCAGTCCCGAAAC
CCCCATCGAGAAAGACAACGGGCATGATGACGACCGGCGGCGCCTTCTTC
CGCCATCATCGTTCCCCTTCATCGGTCAACAACAGGGATGATGGCGACCG
GCAGTGCCTTCTTCCGCCGCCATCATCATCGCTCCCCTTCATCAGTCGGG
CCTCACCCCCTTCCTGGCGCACCACCAACCGGGCGGACGGCGGAAGCCCT
TTCACCGACGAGCCCGCGCCCTGCCGCCTCTGCCTCCCGCCGACTGCTGC
ACGGCTCAGCAGTCCGGGTCGC
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