mRNA_H-akashiwo_Contig12.11.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.11.2
Unique NamemRNA_H-akashiwo_Contig12.11.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK)

HSP 1 Score: 543 bits (1400), Expect = 3.450e-194
Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 3
Query:   57 MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 872
            MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFW CMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG
Sbjct:    1 MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWNCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 272          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A7S3XPW3_HETAK (Superoxide dismutase [Fe] n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW3_HETAK)

HSP 1 Score: 346 bits (887), Expect = 5.420e-117
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 3
Query:   57 MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQ 593
            MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFW CMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQ
Sbjct:    1 MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWNCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQ 179          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 3.330e-104
Identity = 165/252 (65.48%), Postives = 188/252 (74.60%), Query Frame = 3
Query:  117 SMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 872
            S SM   SR D +KA  AAA  +AA  +   + PA+ADGPY LPDLPY+YDALEP ID+ATMKFHHDKHHA YV N NKALAGK    S+LDLQ  A+K G  VRN+GGGHYNHC FW  +   + SG+PS  LA AIDEAFGSMD MK +F   A G FGSGWAWLG   DGKL I GTPNQDNPLM+G     AM PILGLDVWEHAYYL+Y+NRR EY++ FW +VNWA VS+NYE YAS+G GVPV+G
Sbjct:   55 SDSMGSLSRGDALKA--AAASAAAAGFVFSNSFPAFADGPYNLPDLPYSYDALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAP-SLLDLQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHESSGAPSGTLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAA-GTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 300          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA)

HSP 1 Score: 308 bits (789), Expect = 3.090e-101
Identity = 162/246 (65.85%), Postives = 185/246 (75.20%), Query Frame = 3
Query:  138 SRRDFIKATGAAALGSAAFSLAGGNSPAYA-DGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 872
            SRR  I+ TGAA + +   +    + PA A DGPY LPDLPYAY+ALEP ID+ATMKFHHDKHH  Y+ N NKA+AGK+ V SILDLQ GA+KAG  VRN+GGGHYNH  FW  + P  +SG PSAAL  AID +FGS DAMKEKF AAA G FGSGWAWLGV  DGKL I  TPNQDNPLM+G     AM PILGLDVWEHAYYL+Y+NRR EY+  FW +VNWA+VS+ YE YA K  GVPV+G
Sbjct:   35 SRRQAIQ-TGAATVTATGLAFLTNSVPARAEDGPYVLPDLPYAYEALEPHIDAATMKFHHDKHHLAYITNANKAVAGKEAV-SILDLQKGAIKAG--VRNAGGGHYNHSLFWTTLAPAADSGKPSAALTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLMEGAACT-AMIPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWAKVSEYYEQYALKQEGVPVQG 275          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A8J5XSB1_DIALT (Superoxide dismutase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSB1_DIALT)

HSP 1 Score: 291 bits (744), Expect = 1.540e-94
Identity = 147/217 (67.74%), Postives = 171/217 (78.80%), Query Frame = 3
Query:  213 SPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVP 863
            +PA A+  YTLPDLPY Y+ALEP ID+ATM+FHHDKHHATYVANVNKAL GK    SIL+LQ  A+ AGGAVRNSGGGHYNH  FW+ MGP    G P+ ALA  IDEAFGS D  KE+F+A + G+FGSGW WLGVK DGKL I  TPNQDNPLM G G +  M PILGLDVWEHAYYL+Y+NRR EY+++++ +VNW +V+ NYE YASKG GVP
Sbjct:   55 APALAE--YTLPDLPYDYEALEPYIDAATMRFHHDKHHATYVANVNKALEGKPAK-SILELQKDAISAGGAVRNSGGGHYNHALFWEEMGPATGKG-PTGALAAKIDEAFGSFDKFKEEFSAKSAGRFGSGWCWLGVKPDGKLAIDTTPNQDNPLMDG-GCETKMVPILGLDVWEHAYYLKYQNRRPEYISSWFNVVNWEKVAFNYEKYASKGQGVP 266          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC)

HSP 1 Score: 271 bits (692), Expect = 1.620e-86
Identity = 133/215 (61.86%), Postives = 162/215 (75.35%), Query Frame = 3
Query:  225 ADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVE 869
            A+G ++LP LPY Y +LEP ID  TMK HHDKH   Y+ N+NKAL GK     + D+Q  A+KAG A+RN+GGG+YNH  F+K MGP   SG PSAAL  AID +FGSMD MKE+FNAAA  +FGSGWAWLGV  +GKL I  TPNQDNPLM+G  +   M P+LGLDVWEHAYYL+Y+NRR EY+TN+W +VNW  VS+NYE +A+KG  +PVE
Sbjct:   66 AEGAFSLPALPYDYKSLEPYIDEETMKLHHDKHFNAYLTNLNKALEGKPAA-KLTDIQKEAIKAGPAIRNNGGGYYNHALFFKEMGPAANSGKPSAALQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLMEGC-EGQKMIPVLGLDVWEHAYYLKYQNRRPEYITNWWSVVNWEAVSNNYEKFAAKG--IPVE 276          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A7S2RQL5_9STRA (Superoxide dismutase [Fe] n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RQL5_9STRA)

HSP 1 Score: 259 bits (663), Expect = 3.010e-82
Identity = 156/278 (56.12%), Postives = 185/278 (66.55%), Query Frame = 3
Query:   54 SMKIVALFLCALACVSAFQTQSMSMTES--SRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGS--PSAALATAIDEAFGSMDAMKEKFNA-AATGQ-FGSGWAWLGVKADG-KLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPV 866
            S  I AL + + A  SA  T     T S  SRR+ +K+  A A   AA        PA+A G Y LPDLPYA++ALEP ID+ TMK HHDKHHATYVAN+NKA  GKD V  ILDL A AL+AG  VRNSGGGHYNH FFW+ M P  ++    PS+ L+  ID++FGSMD MK KF A AA G  FGSGW W+ V A G KL I GT NQDNPLMKG+  D  M PILGLDVWEHAYYL+Y+NRR EYV+N+W +VNW +++ N+        GV V
Sbjct:    4 SATISALLVGSAAAWSAPMTMKAGETSSDLSRRNILKSGSAFAAAVAA--------PAFA-GAYELPDLPYAFEALEPYIDTPTMKIHHDKHHATYVANINKAREGKDDV-PILDLMADALEAGPGVRNSGGGHYNHAFFWEEMAPADKAAKTKPSSDLSAMIDKSFGSMDDMKAKFEAQAAPGAVFGSGWVWVCVNAKGDKLSIVGTANQDNPLMKGV-TDEVMFPILGLDVWEHAYYLKYQNRRPEYVSNWWNVVNWDKINSNFAYVVENHAGVSV 270          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A7S1DDM0_HEMAN (Superoxide dismutase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DDM0_HEMAN)

HSP 1 Score: 260 bits (665), Expect = 3.050e-82
Identity = 132/214 (61.68%), Postives = 152/214 (71.03%), Query Frame = 3
Query:  231 GPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 872
            GPY LP LPY Y ALEP ID  TMK HHDKHH  YV NVNKAL GKD   SI  LQ  A+K+  A+RN+GGGHYNH  FW  + P   SG PSAAL  AIDEAFGS D M E F+  A  +FGSGWAWLGV  +GKL I  TPNQDNPLM+G G    M P+LGLDVWEHAYYL+Y+N+R EY+  F+ ++NW  VS NY  +A KG+ VPV+G
Sbjct:   82 GPYKLPPLPYDYAALEPAIDEMTMKIHHDKHHQAYVNNVNKALEGKDAP-SITALQKDAMKSP-ALRNNGGGHYNHALFWSTLSPVASSGKPSAALQKAIDEAFGSTDKMVEAFSGCAAKRFGSGWAWLGVSPEGKLVIDSTPNQDNPLMEGAGC-AKMIPVLGLDVWEHAYYLKYQNKRPEYIKAFFSVINWGVVSKNYADFAVKGLPVPVQG 292          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A6V0Z098_9STRA (Superoxide dismutase [Fe] n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0Z098_9STRA)

HSP 1 Score: 259 bits (662), Expect = 3.500e-82
Identity = 150/263 (57.03%), Postives = 179/263 (68.06%), Query Frame = 3
Query:   99 SAFQTQSM-SMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGP--EKESGSPSAALATAIDEAFGSMDAMKEKFNA-AATGQ-FGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 872
            SA+ T +M + T +SRR+ ++   A A   AA        PA A+  Y +PDL Y ++ALEP ID+ TMK HHDKHH TYVAN+NKA  GKD V  IL+LQ  AL+AG A RNSGGGHYNH FFW  M P  E +   PSA L  AID+AFGS+D MK KF A AA G  FGSGW W+   +DG L + GTPNQDNPLMKG+  D  M PILGLDVWEHAYYL+Y+NRR EYV+N+W +VNW +VS+NY        GVPV G
Sbjct:   14 SAWSTLTMKAQTPNSRRNILQKGAAIATAIAA--------PAAANA-YAVPDLLYPFEALEPYIDAPTMKIHHDKHHGTYVANINKATEGKDEV-DILELQLNALEAGPAYRNSGGGHYNHAFFWDEMAPPDEAKKTKPSAELEAAIDKAFGSLDDMKAKFEAQAAPGAVFGSGWVWICASSDG-LKLVGTPNQDNPLMKGV-TDEVMFPILGLDVWEHAYYLKYQNRRPEYVSNWWNVVNWDKVSENYAYVTENKAGVPVRG 264          
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Match: A0A7S0L727_9EUKA (Superoxide dismutase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L727_9EUKA)

HSP 1 Score: 259 bits (663), Expect = 6.950e-82
Identity = 133/224 (59.38%), Postives = 160/224 (71.43%), Query Frame = 3
Query:  198 LAGGNSPAYA-DGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPV 866
            L G  SPA A D  ++LP LPYAYDALEP +D+ATMKFHHD HH  Y+ N+NKA+AGK    S++ L  GA  A   + N+GGGHYNHC FW  MGP K  G+P+  LAT ID AFGS D  K KF+AAA G FGSGWAWL V  DG + I  TPNQDNPLM G   +  + PILG+DVWEHAYYL+Y+NRR EY+T F+ +VNWA+V + Y+ YASKG  VP+
Sbjct:   78 LLGAQSPALAEDAMFSLPPLPYAYDALEPHVDAATMKFHHDFHHQAYINNLNKAMAGKPSA-SLVSLMPGAKAA--KLNNAGGGHYNHCLFWTTMGP-KCGGAPTGTLATKIDAAFGSYDEFKAKFSAAAAGVFGSGWAWLAVAKDGSVQIVTTPNQDNPLMDG-ATEPGLVPILGIDVWEHAYYLKYQNRRPEYITAFYNVVNWAKVGEYYDEYASKGEPVPL 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XQ28_HETAK3.450e-19499.63Superoxide dismutase [Fe] n=2 Tax=Heterosigma akas... [more]
A0A7S3XPW3_HETAK5.420e-11799.44Superoxide dismutase [Fe] n=1 Tax=Heterosigma akas... [more]
D7G8P0_ECTSI3.330e-10465.48Superoxide dismutase [Fe] n=1 Tax=Ectocarpus silic... [more]
A0A835ZFH9_9STRA3.090e-10165.85Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
A0A8J5XSB1_DIALT1.540e-9467.74Superoxide dismutase n=1 Tax=Diacronema lutheri Ta... [more]
L1K0Q9_GUITC1.620e-8661.86Superoxide dismutase n=1 Tax=Guillardia theta (str... [more]
A0A7S2RQL5_9STRA3.010e-8256.12Superoxide dismutase [Fe] n=1 Tax=Eucampia antarct... [more]
A0A7S1DDM0_HEMAN3.050e-8261.68Superoxide dismutase n=2 Tax=Hemiselmis andersenii... [more]
A0A6V0Z098_9STRA3.500e-8257.03Superoxide dismutase [Fe] n=1 Tax=Skeletonema mari... [more]
A0A7S0L727_9EUKA6.950e-8259.38Superoxide dismutase n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:741792..744764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8P0
PFAMsSod_Fe_C,Sod_Fe_N
Model size1028
Max annot lvl2759|Eukaryota
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categorychloroplast
Exons9
Evalue3.06e-106
EggNOG OGsCOG0605@1|root,KOG0876@2759|Eukaryota
Ec32 ortholog descriptionmanganese superoxide dismutase
Ec32 orthologEc-22_002450.1
EC1.15.1.1
Descriptionoxidoreductase activity, acting on superoxide radicals as acceptor
Cds size819
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.11.2prot_H-akashiwo_Contig12.11.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 741848..744611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.8812327-UTR-H-akashiwo_Contig12:741791..7418471681387115.8812327-UTR-H-akashiwo_Contig12:741791..741847Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 741792..741847 +
1681387115.9792302-UTR-H-akashiwo_Contig12:744611..7447641681387115.9792302-UTR-H-akashiwo_Contig12:744611..744764Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 744612..744764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.8948324-CDS-H-akashiwo_Contig12:741847..7418811681387115.8948324-CDS-H-akashiwo_Contig12:741847..741881Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 741848..741881 +
1681387115.902919-CDS-H-akashiwo_Contig12:742006..7420741681387115.902919-CDS-H-akashiwo_Contig12:742006..742074Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 742007..742074 +
1681387115.9104888-CDS-H-akashiwo_Contig12:742188..7422791681387115.9104888-CDS-H-akashiwo_Contig12:742188..742279Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 742189..742279 +
1681387115.9181545-CDS-H-akashiwo_Contig12:742419..7425321681387115.9181545-CDS-H-akashiwo_Contig12:742419..742532Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 742420..742532 +
1681387115.9266353-CDS-H-akashiwo_Contig12:742657..7427391681387115.9266353-CDS-H-akashiwo_Contig12:742657..742739Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 742658..742739 +
1681387115.9356544-CDS-H-akashiwo_Contig12:743126..7432751681387115.9356544-CDS-H-akashiwo_Contig12:743126..743275Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 743127..743275 +
1681387115.946967-CDS-H-akashiwo_Contig12:743566..7436391681387115.946967-CDS-H-akashiwo_Contig12:743566..743639Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 743567..743639 +
1681387115.9560208-CDS-H-akashiwo_Contig12:744097..7442061681387115.9560208-CDS-H-akashiwo_Contig12:744097..744206Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 744098..744206 +
1681387115.9692132-CDS-H-akashiwo_Contig12:744511..7446111681387115.9692132-CDS-H-akashiwo_Contig12:744511..744611Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 744512..744611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.11.2

>prot_H-akashiwo_Contig12.11.2 ID=prot_H-akashiwo_Contig12.11.2|Name=mRNA_H-akashiwo_Contig12.11.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=273bp
MKIVALFLCALACVSAFQTQSMSMTESSRRDFIKATGAAALGSAAFSLAG
GNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKA
LAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWKCMGPEKESGSP
SAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGT
PNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVN
WAQVSDNYESYASKGMGVPVEG*
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mRNA from alignment at H-akashiwo_Contig12:741792..744764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.11.2 ID=mRNA_H-akashiwo_Contig12.11.2|Name=mRNA_H-akashiwo_Contig12.11.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2973bp|location=Sequence derived from alignment at H-akashiwo_Contig12:741792..744764+ (Heterosigma akashiwo CCMP452)
TCATTCCCCTTTTTGCTTGCCTTGCTTGCATTATCACTTCACCTTGCAGC CAAAGCATGAAGATCGTCGCCCTTTTTCTGTGCGCACTCGGTAAGTCAGA AGATGATCTTGCCCATCATTGAACATGCGTTGAAATGAAAACCCCGATCA GTATCGAAGCAAGACCTGCTGATGTTGCATAAATCCGACCCCCCCTTCCT CTCCACTTTGCTTAGCCTGCGTGTCTGCTTTTCAGACCCAGTCCATGTCT ATGACTGAGTCTTCTCGCAGGGACTTTATTAAGGTTGGCCTCCTCCTGAA CAATCATATTGTCGTTTTGTTTTTTTGTGAAGAGCTTCTTTGCTTTTTCA CAATGCTAAGGTACTGCTCTGTTGCAACAACCTATTTCTTCCTACAGGCT ACTGGTGCCGCCGCCCTCGGTTCTGCCGCTTTCTCTCTTGCTGGCGGCAA CTCTCCTGCCTACGCCGATGGGCCTTACACCCTTCCAGGTTCACGTCACT TGCTGTTGGCATTTTGCTGAAGATGAAGCAGACTGTGTGTCGTTTTAATC CTGCGTTATAGAGTTTGCGATCCTTATTTAAGCATTTTTCGTGACAGCTC TGGGTTGTCTTCCTTGCTATTCTCACAGATCTTCCTTACGCTTACGACGC CCTGGAGCCCATCATCGACTCTGCCACCATGAAGTTTCACCATGACAAGC ACCACGCCACCTACGTGGCCAACGTCAACAAGGCTCTTGCCGTGAGTGAC TGGTCACCTTTCATGTCTGCATGCCTGTATGTAAGAACCAGTATATATGT GTTCATTTGCATCAGATCTGTGCACCAAAAAACTTTTGAGTCTTATGTTT TTCCTTATTTTTTCAGGGTAAGGATGGAGTTGGCTCCATTCTGGACCTCC AGGCTGGTGCCTTGAAGGCTGGTGGTGCCGTCCGTAACTCTGGTGGCGGT AAGTTAGTGTACTGTTCACAAATATGCCCTTAGACCTACATCTAGTCTAT CTGCATACCCGCTGTCTTTCTCATTACAATCTGCATAGCCGCTGTCTTTC TCATTACAATTACATGTATACCCTATGTGGTGTTGCCCCAAACTCCACCC CCTCGAACTACAAACGTTTTAAAACAAATATTGACAAAAAAATATCCTAC TATAAGGCTTTTATCAACAAGTCTGTATCATGGTAGCTTTGTGCTTGTAG TTACTTGAACCGATCCATACATTTTACTCGTCAGTAGGGTCGCGGCTGGA GTAGAGGACCTTCCTCAGGATGTGACGAGGCATGAGAACGTATAAAAAAA AAAAAATAAAAAAAAAATCTTTTCTCTTCTCACAGGCCACTACAACCACT GCTTCTTCTGGAAGTGCATGGGCCCTGAGAAGGAGTCCGGCAGTCCTTCC GCTGCTCTGGCCACGGCCATTGACGAGGCCTTTGGCTCGATGGACGCCAT GAAGGAGAAGTTCAACGCTGCCGCCACTGGCCAGGTGCTGGTTTCCACCA TGATAGAATGTGCCAGTACTGGACGAAATCTATTCGGTGCTAAGTATTCA CCAAAGCAACTTTTGGTGCTCATACCACAAACATACTTGCTGCTGTGATT TACACCTGCTGTACCACTCAGAGTGGTATGTAAACCTATATATATATATA TATAAAGAACAGACTGAATCCACAAGCGTTGCCACCCAGGCTACAGTTCA TTGAGAAGTCGGATGTCCTGCACTTTGGCTTCATGTATAAGGCTGTTCAC TCCCTGCTTTCCTTTCATTTCACAGTTCGGCTCTGGCTGGGCATGGCTTG GTGTGAAGGCTGATGGCAAGCTTGGCATCTGCGGCACCCCCAACCAGGGT AAGCTTGGCACTACTAGCCATATCCTTGTCCTACGATGTTGAAGTCTTGC TGCTGGAAGTGAAAGGTGGTTTCATCTCATCTGCCCCTTAAGTTCTCTTC TGTAATGATCACCTCAGCAGAAACCAAAGTGGCTGCCAGGTGACAGACAG CCCCAACCCGCCCCCACGCCCCCTCGCGCCCGCCTCTCTCTGCGCGCAGA TAACCCTCTCATGGAAGGCGCCGCCGACCCCATGAAGCCCATCCTGGGCC TGGATGTGTGGGAGCACGCCTACTACCTCAAGTACCAGAACCGCCGCCCC GAGTGAGTCCTCGCCTGCCTGCCTGCCTTCCCCCCCCGCCCCACCCCTCC CTCCCGCCGTGGGCATGCCTGCTGCCCGGGCGGCGGCGGGGGGCTGCCGC ATCGCGCCGCCCTCTCTGCGGGGCCCGGCCCCGCTGGGCTGCCTTCTCCC TTTCAGACAACCCGTTGATGAAGGGGATTGGAAAGGACCTTGCCATGAAG CCTATTTTGGGGCTGGATGTGTGGGAGCATGCTTATTACCTGCAGTATAA GAACAGACGTTTGGAGTGAGTAGTATGGGGGTAGGGGTAGGGTGCTTCTC TCCGGCCCTGCAGTTCTCTACCAACATTCAATGTATTTATCTACTTGTTG ACTGCCATTTACTTAAATGCTACATAGACATGCCAGACGTTCATCCACAC ACCACCTTCAGTTGAAATCCACACTCCACCTTCAGTTGAATTGCACTTGC TGACATACTACAGTACACTTCATCAACTTTCAAAACCACCTTCCGTCCCT CGTTTTTTGTAGCCTCTTGTGTAAAAGCTTCTTTCTTGCATTTGCCAACT TGTGTCTAAACAACCTGCAGGTACGTGACCAACTTCTGGAAGATTGTCAA CTGGGCCCAGGTGTCCGACAACTATGAGAGCTACGCCTCCAAGGGCATGG GTGTGCCTGTGGAGGGTTAAACCAATGCAACCAATGCGCTGTGTATAGCA CATTATTATAGTGGATAGGATATGGGGACAGTAGCAAAGGCCACCAACAA ATCTTTATTTGAGTGATGTGTGGTGGATATTGTCTTTTTTTCTTTTTTTT TGAACTGTTGTTTTCTTGTTGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:741792..744764+

>mRNA_H-akashiwo_Contig12.11.2 ID=mRNA_H-akashiwo_Contig12.11.2|Name=mRNA_H-akashiwo_Contig12.11.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=819bp|location=Sequence derived from alignment at H-akashiwo_Contig12:741792..744764+ (Heterosigma akashiwo CCMP452)
ATGAAGATCGTCGCCCTTTTTCTGTGCGCACTCGCCTGCGTGTCTGCTTT
TCAGACCCAGTCCATGTCTATGACTGAGTCTTCTCGCAGGGACTTTATTA
AGGCTACTGGTGCCGCCGCCCTCGGTTCTGCCGCTTTCTCTCTTGCTGGC
GGCAACTCTCCTGCCTACGCCGATGGGCCTTACACCCTTCCAGATCTTCC
TTACGCTTACGACGCCCTGGAGCCCATCATCGACTCTGCCACCATGAAGT
TTCACCATGACAAGCACCACGCCACCTACGTGGCCAACGTCAACAAGGCT
CTTGCCGGTAAGGATGGAGTTGGCTCCATTCTGGACCTCCAGGCTGGTGC
CTTGAAGGCTGGTGGTGCCGTCCGTAACTCTGGTGGCGGCCACTACAACC
ACTGCTTCTTCTGGAAGTGCATGGGCCCTGAGAAGGAGTCCGGCAGTCCT
TCCGCTGCTCTGGCCACGGCCATTGACGAGGCCTTTGGCTCGATGGACGC
CATGAAGGAGAAGTTCAACGCTGCCGCCACTGGCCAGTTCGGCTCTGGCT
GGGCATGGCTTGGTGTGAAGGCTGATGGCAAGCTTGGCATCTGCGGCACC
CCCAACCAGGACAACCCGTTGATGAAGGGGATTGGAAAGGACCTTGCCAT
GAAGCCTATTTTGGGGCTGGATGTGTGGGAGCATGCTTATTACCTGCAGT
ATAAGAACAGACGTTTGGAGTACGTGACCAACTTCTGGAAGATTGTCAAC
TGGGCCCAGGTGTCCGACAACTATGAGAGCTACGCCTCCAAGGGCATGGG
TGTGCCTGTGGAGGGTTAA
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