mRNA_H-akashiwo_Contig12.105.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.105.1
Unique NamemRNA_H-akashiwo_Contig12.105.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.105.1 vs. uniprot
Match: A0A835Z948_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.940e-16
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:    5 KNMTAKSAVINLWSLVTFLALPLLCVRFDLWHEVLIFWAAITVLMFIVPPFGWHRPHPYSDKVWNRR 205
            K  T KS VINLWSLV+ L   +L VR + W  VL  W A+T+LM IVPPFGW RPH YSD  WNRR
Sbjct:  371 KPQTLKSMVINLWSLVSILGPMVLIVRMETWQAVLAVWVAVTLLMMIVPPFGWLRPHAYSDFEWNRR 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z948_9STRA1.940e-1661.19Sulfotransferase family-domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:5033600..5034474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_001320.1
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387117.845041-UTR-H-akashiwo_Contig12:5033599..50336091681387117.845041-UTR-H-akashiwo_Contig12:5033599..5033609Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 5033600..5033609 +
1681387117.8969355-UTR-H-akashiwo_Contig12:5034101..50344741681387117.8969355-UTR-H-akashiwo_Contig12:5034101..5034474Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 5034102..5034474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387117.8603833-CDS-H-akashiwo_Contig12:5033609..50336481681387117.8603833-CDS-H-akashiwo_Contig12:5033609..5033648Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5033610..5033648 +
1681387117.87536-CDS-H-akashiwo_Contig12:5033770..50338201681387117.87536-CDS-H-akashiwo_Contig12:5033770..5033820Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5033771..5033820 +
1681387117.8854713-CDS-H-akashiwo_Contig12:5033977..50341011681387117.8854713-CDS-H-akashiwo_Contig12:5033977..5034101Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5033978..5034101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.105.1prot_H-akashiwo_Contig12.105.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 5033610..5034101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.105.1

>prot_H-akashiwo_Contig12.105.1 ID=prot_H-akashiwo_Contig12.105.1|Name=mRNA_H-akashiwo_Contig12.105.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
MTAKSAVINLWSLVTFLALPLLCVRFDLWHEVLIFWAAITVLMFIVPPFG
WHRPHPYSDKVWNRRGPKEY*
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mRNA from alignment at H-akashiwo_Contig12:5033600..5034474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.105.1 ID=mRNA_H-akashiwo_Contig12.105.1|Name=mRNA_H-akashiwo_Contig12.105.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=875bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5033600..5034474+ (Heterosigma akashiwo CCMP452)
TGGCAAAAACATGACTGCCAAAAGTGCTGTCATCAATTTGTGGTCTTTGG
TGAGCTATCTTTGCATTGCAAGTACAGATTCCATTTGAGATTCTTGGCTT
TCTCAAAAATGAATCTACCGTACATGAATAGTGACACATCCATCAAAATT
CTGATCCATGCAATCCGTTAGGTCACGTTCTTGGCCCTCCCACTTCTTTG
TGTCCGCTTTGATCTGTGGCAGTGAGTACTCTGCATTTTACTCTGCATTT
TCTTGCTGATACCCTGCGAATTATAATGTTGGGGGGGAATAACAATGTAT
TTAAGGCGCTTTTCACATGAATTAACAACCATATGCCAGTACTAAAATCT
ACTGTTTCCCCTTTTCAATATATTTCAGCGAAGTTTTGATCTTCTGGGCA
GCTATCACTGTGCTGATGTTTATCGTACCACCCTTTGGATGGCACAGACC
ACACCCATACTCAGATAAAGTCTGGAACCGAAGAGGGCCGAAGGAGTACT
AGTAACTACATAGCAACTGAACTTTCCCGGCTTGATGCCAAACTTGTTTT
TACTAGAAGTCATATTTTGTGGGTTTAGAAAATATTGTTTCTATCTGACG
TGATTTTGCGGTTGGGAAAACCTACCTCACCCAAAAGTATCTGTCTTGCT
GTTACTATGCCGATTTTGAAGGAGCATGGGCCTGAATTGCATACACCCAT
CGCTTTGCTCCTTGCATAGCATCCTCGAACAGCATGCACTTTTCATCAGG
GTCCTGTATCACACAAGCATAGGAACTGCATCTAAATGTCCATCGTGCAA
GAGGCTGACAGAATGAATTGTACAGTGTACAACAGGGGGAAGCCAGAACT
TTAAGCTTGTACTACAGCTGGATTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:5033600..5034474+

>mRNA_H-akashiwo_Contig12.105.1 ID=mRNA_H-akashiwo_Contig12.105.1|Name=mRNA_H-akashiwo_Contig12.105.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5033600..5034474+ (Heterosigma akashiwo CCMP452)
ATGACTGCCAAAAGTGCTGTCATCAATTTGTGGTCTTTGGTCACGTTCTT
GGCCCTCCCACTTCTTTGTGTCCGCTTTGATCTGTGGCACGAAGTTTTGA
TCTTCTGGGCAGCTATCACTGTGCTGATGTTTATCGTACCACCCTTTGGA
TGGCACAGACCACACCCATACTCAGATAAAGTCTGGAACCGAAGAGGGCC
GAAGGAGTACTAG
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